MD03G1027100.v1.1

E3 ubiquitin-protein ligase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0007872
Physical Location & Seq
Forward (+)
2176015 .. 2192375
16361 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1027100.v1.1.491

Sequence Viewer

Length: 11181 bp
ATGAAGTTAAAAAGAAGGAGGGCGGTTGAAGTGCCTCCAAAAATTAGATCCTTCATCAATAGTGTTACTGCTGTTCCCTTTGAGATTATAGAGGAACCTCTGAAAGGTTTCATCTGGGAGTTTGATAAGGGAGATTTCCATCATTGGGTTGATCTTTTCAACCATTTTGATTCATTTTTTGAGAAGCATGTAAAATCCAGGAAGGATTTGCAGCTTGATGATAATTTTCTAGAAAGTGATCCTCCTTTTCCGAGGGAAGCTGTTCTTCAAGTTCTCCGTGTAATAAGGATAATTTTGGAGAACTGCACAAATAAGCATTTCTACAGTTCTTATGAGCAGCATCTTTCATCTCTGCTTGCTTGCACTGATGCGGATGTGGTTGAGGGTTGCCTGCAGACTTTGGCTGCTTTTGTAAAGAAAACAGTCGGAAAGTATTCCATTAGAGATGCTGCACTAAATTCAAAGTTATTCGCTCTTGCACAAGGTTGGGGGGGAAAAGAAGAGGGTCTTGGATTAATTGCTTGTGCAGTACAGAGTGGTTGTGACCCTGTTGCCTATGAATTAGGTTCCACCCTTCATTTTGAGTTCTATGCATCCAATGATTCAACAGGTGACATCCCTGCCAACCAAGGATTACAAATCATTCACTTACCTAACATCAACACTCATCCAGAAACGGATCTTGAGCTTTTGAGTAAGTTAATTGCTGAGTACAAAGTACCCTCAACCTTAAGATTTTCTTTATTGACAAGATTGCGGTTTGCAAGGGCTTTTGGTTCTGTAGCTACTCGGCAGCAGTACGCATGCATCCGCTTATATGCCGTCATAGTTCTTGTTCAAGCAAATAGTGATGCTGACGATCTTGTTTCTTTCTTCAACACTGAACCTGAGTTTATCAATGAATTAGTGTCATTGTTGAGCTTTGAGGATGTGGTTCCTGAGAAAATTCGAATTCTATGTCTTCTTTCACTGGTTGCTCTTTGTCAAGATCGATCCCGGCAGCCTACTGTTTTGACTGCTGTCACATCTGGTGGTCATCGTGGAATCCTATCCAGTCTCATGCAGAAGGCCATTGATTTTGTCACCAAAGATACATCAAAGTGGTCTGTTGTTTTTGCTGAGGCTCTATTATCTCTTGTCACAGTTTTGGTGTCATCATCATCAGGTTGTTCAGCTATGCGTGAAGCTGGTTTTATCCCCACCCTTCTGCCTTTGCTTAAAGATACAAACCCACAACACCTTCATTTGGTCAGCACATCTGTGCACATTTTAGAAGCTTTTATGGATTACAGTAATCCTGCTGCTGCATTGTTTCGGGATTTGGGTGGTTTAGACGATACAATCTCTCGCCTACAGGTGGAAGTGTCTCATATAGAAAATGTCTCAAAGCATCAAGATGAGGATTCTGACATCATTGGGAGTAGTGCACAAGTAGTTGCAGGAACTTCCACAGAGTTAGACAACATGCAGCCTTTGTATTCAGAACCACTGGTTTCATATCACAGACGACTGCTTATGAAAGCTTTATTGCGTGCTATATCCCTGGGGACTTATGCCCCTGGAAATACTGCCCGTGTTTATGGCTCAGAGGAGAGTCTATTGCCGCAATGCTTATGCATTATATTTAAAAGGGCAAAGGATTTTGGTGGCGGGGTATTCTCACTGGCGGCAACTGTCATGAGTGATTTAATACACAAAGATCCTACCTGTTTTCCAGTCTTAGATGCAGCAGGCCTTCCTTCTGCCTTCTTGGATGCTATAATGGATGGAGTTCTTTGCTCTGCGGAAGCCATTACATGCATACCACAGTGTCTGGATGCCCTATGTTTAAATACTACTGGTCTTCAGGCCGTGAAAGATCGCAATGCTTTGAGGTGTTTTGTGAAGATATTTACTTCAAGAACTTATCTGCGTGCCCTGACCAGTGACACACCAGGCTCGTTATCTAGTGGATTGGATGAATTAATGCGCCATGCTTCCTCATTGCGTGGGCCTGGAGTGGATATGCTGATTGAGATCTTAAATGCCATTTCAAAAATTGGACATGGGGTTGATGCTCCTTACATGTCAATGGATCCTTTGGGCTCTTCTACTCCTGTTCCCATGGAAACAGATGGAGAAGAGAGGAATTTGGTCCTGTCTGATAATGGGGAATCATCCAAAACGGAGAGTTCAGAGCAGACTGTGGAACCACCTTCTGATTCTTCAGTGGGGAATGTTGAATTATTCCTTCCTGATTGTGTGAGCAATGCTGCACGTCTTCTTGAAACAATACTTCAGAATGGTGACACATGTCGTTTATTTGTGGAGAAGAAGGGGGTCGAAGCTGTCCTGCAGTTATTTACCTTGCCTTTGATGCCTCTTTCTGTTTCAGTTGGCCAGAGTATTTCTGTTGCATTTAAGAACTTCTCACCACAACATTCTGCTTCTTTGGCTCGGGCTGTTTGTTCATTCTTGAGAGAGCATATGAAATCAACAAATGAACTCTTAGTTTCAGTTGGAGGGACTCAACTTGCTTTGGTGGAATCTACGAAGCAAACTCAAGTTTTGAGACATCTTTCTAGTCTTGAAGCTATTCTATCTCTGTCTAATGTTCTGTTGAAAGGGACCACTACTGTGGTGTCTGAACTGGGTGCAGCAGATGCAGATGTATTGAAAGATCTCGGAAGCACATACAGGGAAATAATTTGGCAAATCTCTCTGTGCAATGATGTCAAGTTAGATGAGAAGATCAATGCTGAGCAAGAACCAGAGAGTGCTGAGGCAGGTCCGACTAATGCGTCTGGAAGGGAGAGTGATGATGATGCTAATATACCAATGGTGAGATATATGAATCCAGTTTCTATCAGGAATCAGCCCTTGTGGGGTGGAGAACGCGAGTTTCTTTCAGTTGTTCGCTCTGGTGAAGGTTTGCACCGTCGTAGTCGTCATGGGTTTACACGCATAAGGGGTGGAAGGACAAACCGACATTTGGAGGCTTTAAATGTTGATTCTGAATCTTCATCAACAGTATCGGAGACATCTACTTCCCAGGATTTGAAAAAGAAAAGTCCTGATGTTCTTGTGATAGAAATCCTCAACAAGCTGGCTTCCACACTGCGTTCCTTCTTCACAGCTCTTGTCAAGGGATTCACATCACCAAATCGGCGTAGAGACTCTGGGTCATTGAGTTTGGTTTCCAAGACTCTTGGAACTGCCCTAGCTAAAATATTTCTCGAGTCTCTTAGTTTCTCTGGGCATTCTACATCAGCTGGGCTTGATACTTCACTGTCAGTCAAGTGTCGATATCTTGGCAAAGTTGTCGATGATATGGTGTCACTTACATTTGACAGCAGGCGGCGAACTTGTTATACTGCAACAGTAAATAATTTCTATGTGCATGGTACTTTTAAGGAGCTGCTTACAACATTTGAAGCTACTAGTCAGTTGTTGTGGACACCACCATACTCTGTGTCAGCGTCAGGTATTGATCCTGAAAAGACAGGTGAAGGAAGTAAACTGTCCCACAGTTCATGGCTGCTTGATACTTTACAGAGCTATTGCCGTCTGCTCGAGTATTTTGTTAATTCTTCTTTACTCTTATCCACAACCTCTGCATCTCAGGCGCAGTTGGTTGTTCAGCCAGTTGCAGTTGGTTTGTCAATCGGGCTTTTCCCTGTGCCAAGGGACCCAGAAGTTTTTGTTCGTATGTTGCAATCTCAAGTTCTTGATGTGATACTTCCAGTCTGGAACCACCCTATGTTTCCAAATTGTAGTCCAAGTTTCATTGCTTCTATTGTCTCTCTTGTCATGCATGTATATTCTGGTGTTGGAGATGTGAAGCAGAATCGCAGTGGCATTGTTGGAAGTACAAACCAGCGAATCATGCCCCCACCACTTGATGAAAATACTATTACCACCATTGTTGAGATGGGTTTTCCAAGAGCTAGAGCAGAGGAAGCTCTTAGGCGGGTGGAAACAAATAGCGTTGAAATGGCCATGGAGTGGCTCTTTAGTCATCCTGAGGATCCTGTGCAGGATGATGATGAACTGGCTCGGGCACTAGCTCTTTCACTAGGAAATTCATCAGATGCATCCAAAGCTGATAGTGTTGAAAAGTCTGTTGATGTACTGGCAGAAGAGGGTTGTGTGAAAGCTCCTCCTGTTGATGATGCCCTTGCAGCATCGGTCAAATTGCTTCAAAGTAATGATACCATGGCATTCCCATTGACAGATTTGCTTGTGACGCTTAGCAACCGGAACAAAGGTGAAGACCGTCCAAGAGTTGTATCTTATCTTACTCAACAGCTAAAGAATTGTTCATTGGATTTTTCTAATGATACCAGTGCATTGAGTATGGTTTCACATGTTATTGCATTACTTCTTTCCGAGGATGGAAGCACAAGGGAAATCGCTGCACAGTATGGTATTGTGTCTACTGCAACAGATATCTTGATGAACTTTAAGGGCAAGGATGAGTCAGGCAATGAGTTTCTTGTCCCAAAATGTATCAGTGCTCTTCTGCTTATTTTGGATAACATGTTGCAATCAAGGTCCAGAATTTCTGAAGGTACTCAAACGGGGGCTTTACCTGAATTATCTGGAGAGCTTGCGTCAATCCCTGCATCAGATACAGAGAAAAAACAGCCTATGGATGCCCATGAAAGAGATTCTGCCATGGCATTTGAGAAAATATTGGGGAAATCTACTGGTTATTTGACTATGGAAGAGAGTCATAAGGTGCTAGCAGTTGCTTGTGATTTGATAAAGCAGCATGTCCCAGCAATGATCATGCAGGCTGTTTTACAATTATGTGCTCGCTTGACAAAAACTCATGCTCTAGCATTACAATTCCTTGAAAATGGAGGCCTGGCAGCTCTATTTGGCCTTCCAAGAAGTTGTTTTTTCCCTGGATATGATACTATTGCATCTGCTATCGTTCGCCATCTCCTTGAAGATCCACAAACACTGCAAACAGCAATGGAATTGGAGATTCGCCAAGCCCTGAGTGGAAACAGGCACGGTGGGCGCACTTCTGCACGAACATTCTTGACATCAATGGCACCTGTAATCTCCAGAGATCCAGTAGTTTTTATGAAAGCTGCTTCTGCGGTTTGCCAGTTGGAGACATCAGGAGGTAGGACCTTTGTTCTGTTATTGAAGGAAAAAGAGAAGGAAAAGGAAAAATCTAAAGCAGCAGGTGATGAGGCTGGATTATCTTCCAATGAGTGTGTGCGCATTTCTGAAAATAAGATACACGATGGATCTGGTAAATGCTCAAAAAGTCACAAGAAGATCCCTCCCAATCTCACTCAAGTGATAGATCAGCTTCTTGAAATAGTCTTCAAATACCATTTCCCAAATAGCCAGGAAGACTCTGCTAATAACCCATCCGCTATGGAGGTAGATGAACCCACTATGAAGGTGAAGGGTAAATCAAAGGTTGACGAGACAAGGAAAGTGGAGTCTGAATCTGAAAGATCTGCAGGGTTGGCTAAAGTTACCTTTGTTCTCAAATTACTGAGTGATATTCTTCTTATGTATGTACATGCAGTTGGGGTTATACTTAAACGAGATTTAGAAATGACTCAATTGCGGGGATCTAATCAACCAGATGGTCTTGGACATGGTGGTATACTGCACCATGTAATTCATCGATTGCTTCCACTCACCATTGATAAATCTGCTGGACCTGATGAATGGAGAGACAAGTTGTCCGAAAAAGCTTCTTGGTTCCTGGTAGTTCTGTGCGGTCGTTCCAGTGAAGGGCGCAGACGAGTAATTATTGAACTTGTAAAGGCTTTATCCTTGGTTTCGAACTTGGATATTACTTCCACCTTATTACCTGATAAAAGGGTTTATGCGTTTGTTGATTTGGTGTATTCAATTCTGTCAAAAAATTCATCATCTAGCAACTTACCTGGTTCTGGGTTTTCACCAGACATAGCAAAAGGCATGATAGATGGGGGAATGATTCAGTGTCTGACTGGTATCCTTCGGGTGATTGACTTAGACCATCCTGATGCTCCCAAAACTGTGAATTTGATACTCAAGGTGTTAGAAAGCCTAACAAGGGCTGCTAATGCTAGTGAGCAATACTTTAAATCTGATGAGACGAGCAAGAAAAAATCCACAGGGTTGAATGGAAGATCTGATGGTCAGGTAACTGCCCCATCAGCTGATACAACTGTGGGGGATAATCAGAATACAAGCAGTGAACAGGGTGTGGGAGGTATCGTACAGGTTGTTCAAGGGGATCAAGGAACTTCTCAAAGTGAAGCTAATCCTGATGGAAATCCAAACCAGTTGGTGGAACAAGATATGAGGATAGAAGTTGAAGGACCGCTAGCTTCTAATCCATCTATGGAGCTTGGGATGGATTTCATGCGTGAGGGGATGGATGAAGGTAATGTACTGCACAACACTGATCAAATTGAGATGACTTTTCGTGTTGAGAATAGGGCAGATGATGACATGGCTGATTTAGAAAATGACATGGGTGATGATGGCGAGGATGATGAGGATGATGATGAGGGAGAAGATGAGGATGAGGATATAGCAGAGGAAGGTGGTGGCATGATGTCTCTTGCTGATACTGATGTGGAAGATCATGAAGGTAACGGCTTGGGAGATGATTACAATGATGAAATGATTGATGAAGATGATGACGATTTTCATGAGAATCGTGTCATAGAAGTGAGATGGAGGGAAGCCCTTGATGGGCTTGACCATTTGCAGGAAATTGGACAACCTGGAGCTGCAAGTGGTCTCATTGATGTTGCTGCTGAACCTTTCGAAGGGGTTAATGTGGATGACTTGTTTGGTCTGAGAAGGCCGTTGGGTTTCGACCGCCGCCGTCAGACAAGTAGGTCTTCCTTTGAGCGATCTGTTACAGAAACAAATGGATTTCAACATCCTCTCCTTTTAAGACCATCCCAGTCTGGGGATTTGGTCTCAATGTGGTCAGCAGGTGGAAATTCATCCAGGGATCTAGAAGCCCTGTCATCAGGGAGCTTTGATGTAGCTCATTTCTACATGTTTGATGCTCCTGTTCTACCTTTTGATCATGTACCAAGCAATATTTTTGGTGACCGCTTGGGTGGTGCAGCACCCCCACCGTTGACTGATTATTCTGTAGGTATGGATTCATTGCAGTTATCGGGCCGAAGAGGACCAGGTGATGGTCGATGGACCGATGACGGCCAGCCTCAAGCAGGTCCTCAAGCTGCTGCTATTGCACAAGCAGTGGAGGAACAGTTTATATCACAATTACGCAGTCTTGCTCCAGCTGATATCCCTGCTGAACGACAGTCCCAGAACTCAGGAGTGCAGGAGAAACAGCCAGATCTCCCTCCTTTAAGTGATAGTCAAGTAGCAGTGGAGCGTGATGACAGCCATGAAAGAAATGAAGATCAGCATCAAGTTGGGGTTGATGAAACAACACATCAAGTTAACTCAAGTTCTGACGCTGCTCCCTGTCAAGAACAAGTCAATCCAGAATCTGTAGTCGAAGGTGCAGGGGAGTTCTCACAGGTACCTGAACCAATGTCAATTATGCCACCTTCAACCAGCAGTACACCAAGCGATAGCATGGACATTGGTGATGGGAATGGTGCTGCTGGTGAGCAAGTAGGGTCAATGCCAGGTTCTGTCAACTCGTCTGCAGAAATAAGTGCTGGTTTACAATGTGAAGGGGTCTCTGCTGTGCCTTCTAATGCCCATGATGTTACAGTGGTGGAGGCTGTGGGTTGTGATAGATCCTCAAGAACAGAGGGGCAGGTTGGTAATGTGTCGGCAAGTTTCGGTTTTGATGTGCCTACTCCAGATGAACCATCAAGGGAAAACACAACTGTTGCTCCAGAAGCTAATCAGGCTGAACAAGATTTGAATAATGAGGCTAATGGTGCTACTGCAATTGATCCAACCTTCTTGGAAGCTCTACCTGAAGATTTGAGGGCCGAAGTTCTTGCTTCACAGCAAGTTCAGCCCGTTCAACCTCCATCTTATGTGTCACCTTCTGCAGATGACATTGATCCTGAGTTTTTAGCAGCCCTTCCTCCAGATATCCAAGCAGAAGTTTTGGCTCAACAAAGAGCACAACGGGTTGCACAGCAGGCTGAGGGACAACCGGTTGACATGGACAACGCTTCAATAATTGCTACTTTTCCAGCTGATTTACGTGAAGAGGTGCTTTTAACTTCTTCAGAAGCAGTTCTGTCTGGATTGCCTTCTCCATTGCTCGCTGAAGCCCAAATGCTAAGAGACCGAGCAATGAGTCATTATCAGGCTCGCAGCCTTTTTGGGACCAGCCACAGGCTAAATAACCGGAGAAATGGATTGGGTTTTGACCGGCAGACGGTGATGGACAGAGGTGTTGGAGTCACTATTGGCCGGAGGGCAGTTTCTGCTCTTGCAGACTGCTTAAAGGTTAAGGAAATTGAAGGAGAGCCGCTTCTGGATGCTGATGCATTGAAAGCCTTAATTAGGCTATTACGATTAGCGCAGCCCCTTGGTAAAGGACTCTTGCAGAGGCTATTGTTGAACTTATGTACCCACAGTGTTACACGAGCAATCTTAGTTCGTCTTTTGCTCGATATGATCAAACCCGAGGCTGAGGGCTTAGTCGGTGGATTAGCAGCTATTAATTCCCAAAGGCTTTATGGTTGCAATTCAAATGTTGTTTATGGTCGATCACAGTTGTTAGATGGTCTTCCTCCCTTGGTGCTGCGTCGAATTCTTGAGATCTTGACTTATTTGGCCACAAATCATTCTGCTGTGGCAAATATGTTATTCTTCTTTGATTTCTCTGGTGTTCCTGAGTCATCAAGCCCTATGCATGTGGAAACCAAGAAGGACAAAGGCAAGGAGAAAATTGGAGAAGCAGGATCTTCAAAAACTTCTGGAAACACCCAGGATGCTGACATTCCCCTGATATTGTTCCTGAAGCTCCTGAACCGACCTCATTTTGTACACAGCACTGCTCATCTTGAGCAGGTCATGGGCCTGCTTCAGGTTGTTGTATATACTTCAGCTTCAAAATTAGAGGGCCAGTCTCAATCTGAGGGGGCAGATAAGCCTGTTGGTGAAGCATCAGGAGATGGTCAAAAGGGTCCTCCTTTGGAATCAGAATCTGGTCAGGGAGATAAACCTGTTAGTGGTGAATCATCAATTTCAGATGGAAAGAGGAGTACGGATACATATAATGTTTTCTTGAAGCTGCCAGAATCTGATCTGCACAATCTTTGCAGCCTTCTTGGTCGTGAGGGGCTTTCAGATAAACTTTATATGCTTGCTGGTGAGGTGTTGAAGAAGTTGGCCTCAGTTGCAGCGCCCCATCGAAAACTTTTTGTCTCAGCGCTGTCAGAACTAGCTCATGGTTTGAGTGCCTCAGCTGTTGGGGAGCTTGTCACTCTCCGAAACACACATATGTTGGGTTTAAGTGCTGGATCAATGGCTGGGTCAGCAATCTTACGTGTATTACAAGCACTTTGCTCCCTCACCTCACCTAGGGCTAGTGAGAATTCAGGACTGGAGAATGATGCGGAGCAGGAGGAGCATGCCATCATGTGGAAGCTAAATGTTGCACTTGAGCCACTGTGGCAAGAATTAAGCAACTGTATAAGTGCAACTGAAACAGCGCTGGGTCAGAGTTCTTTCTGTCGAACCATGTCTATAGTAAATGTTGGAGACCATGCACAGGGTTCTTCTTCATCTCCTCTCCCCCCTGGAACTCAGAGGCTCCTGCCTTTTATGGAGGCATTTTTTGTTTTGTGTGAAAAGCTACAAGAGAACCTCTCTACAATGCTGCAAGATCAGGCGAATATAACTGCAAGAGAAGTCAAAGAGTCCTCTGGAAACTCAGATCCTTCAACTACCAAGTGCCACAGTTGTGGGGATTCTCAGAGAAAGCTTGATGGTGCTATTACATTTACAAAGTTCGCTGAGAAGCACCGCCGGCTTTTAAATGCTTTTATCAGACAGAATCCAGGTTTGTTGGAGAAATCCCTTACTATGATGCTGAAGGCACCAAGGCTAATTGATTTTGACAACAAGAGAGCGCATTTCCGGTCAAGAATTAGGCATCAGCATGAGCAACATCTCTCTGGTCCTCTGAGAATAAGTGTTCGGCGGGCTTATGTTTTGGAGGATTCTTATAATCAGTTGCGCATGCGGCCTACTCATGACATGAAGGGTCGGTTAAATGTCCAATTCCAAGGGGAAGAGGGTATTGATGCTGGAGGTCTGACACGAGAGTGGTATCAATTACTGTCGAGGGTCATATTTGACAAGGGGGCATTGCTTTTCACCACTGTAGGAAACAATGCAACTTTCCAGCCAAACCCTAATTCTGTCTACCAGACAGAACATCTGTCATATTTTAAATTTGTGGGCCGTGTGGTTGCAAAGGCACTTTTTGATGGGCAACTTTTGGATGTTTATTTCACTCGATCCTTCTACAAGCATATACTTGGTGTAAAGGTGACTTACAATGATATAGAGGCTGTGGATCCTGATTACTACAAGAATTTAAAGTGGATGTTAGAGAATGACGTGAGTGATATTCCTGACCTGACGTTTAGCATGGATGCGGATGAAGAAAAGCATATCCTTTATGAGAAAAACCAGGTTACTGATTATGAGCTGAAACCTGGAGGAAGAAATATTCGGGTTACTGAAGAAACGAAGCACGAGTATGTTGATCTTGTAGCTGAACATATCTTGACAAATGCTATCCGTCCTCAAATTGATTCCTTCCTGTACGGGTTTCATGAATTGGTCCCGCGAGAGCTTATCTCTATTTTCAATGACAAGGAGCTTGAGCTACTCATCAGTGGTCTTCCAGAGATTGATTTGGCTGATTTGAAGGCCAACACCGAGTACACTGGCTACACATCAGCATCTGATGTTGTTAAATGGTTCTGGGACGTGGTTGAAAGTTTTGACAAGGAGGACATGGCGAGACTGCTGCAGTTTGTGACTGGAACATCAAAGGTTCCATTGGAAGGTTTCAGGGCGTTGCAAGGTATCTCTGGTCCTCAGAAATTTCAGATTCACAAGGCTTATGGAGCTCCTGACAGGCTGCCCTCCGCTCATACATGCTTTAACCAGCTAGACCTTCCTGAGTACACCACCAAAGAACAGCTTCATGAACGATTGTTACTTGCTATTCATGAAGCTAGTGAAGGATTTGGCTTTGGTTGA

Protein Analysis

3727

Amino Acids

406.9

Weight (kDa)

5.0

Isoelectric Point (pI)

44.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF908 PF06012 85 - 164 4.2e-12 Domain of Unknown Function (DUF908)
DUF908 PF06012 204 - 358 1.1e-25 Domain of Unknown Function (DUF908)
DUF913 PF06025 419 - 788 9.6e-89 Domain of Unknown Function (DUF913)
UBA_7 PF22562 1294 - 1341 6.9e-15 UBA-like domain
UBA PF00627 1294 - 1330 2.5e-07 UBA/TS-N domain
UBM PF14377 2628 - 2653 4e-08 Ubiquitin binding region
UBM PF14377 2666 - 2694 8.9e-11 Ubiquitin binding region
UBM PF14377 2701 - 2732 2e-07 Ubiquitin binding region
HECT PF00632 3415 - 3725 8.1e-96 HECT-domain (ubiquitin-transferase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 10134
AarI CACCTGC 2 cut(s) 5168, 6938
AasI GACNNNNNNGTC 2 cut(s) 2779, 6847
Acc16I TGCGCA 2 cut(s) 5216, 10145
Acc36I ACCTGC 6 cut(s) 2756, 5168, 6938, 7184, 7747, 8962
Acc65I GGTACC 1 cut(s) 7513
AccB1I GGYRCC 3 cut(s) 5041, 7513, 10003
AccB7I CCANNNNNTGG 4 cut(s) 3984, 6289, 7160, 9546
AccBSI CCGCTC 1 cut(s) 11069
AccI GTMKAC 3 cut(s) 4415, 5614, 10332
AccII CGCG 2 cut(s) 2877, 10762
AcoI YGGCCR 5 cut(s) 2377, 3975, 7180, 8368, 8736
AfeI AGCGCT 2 cut(s) 9336, 9618
AflII CTTAAG 1 cut(s) 730
AflIII ACRYGT 6 cut(s) 2064, 2291, 4345, 4518, 7014, 9451
AgeI ACCGGT 1 cut(s) 8107
AhdI GACNNNNNGTC 2 cut(s) 3160, 5692
AhlI ACTAGT 1 cut(s) 3419
AjiI CACGTC 3 cut(s) 2258, 10531, 10906
AjuI GAANNNNNNNTTGG 6 cut(s) 492, 524, 4286, 4318, 10309, 10341
AleI CACNNNNGTG 5 cut(s) 1259, 2615, 5294, 9867, 10231
Alw21I GWGCWC 6 cut(s) 1266, 1429, 4498, 4798, 8077, 11050
Alw44I GTGCAC 2 cut(s) 1262, 1425
AlwNI CAGNNNCTG 8 cut(s) 1813, 5962, 7481, 7628, 8384, 9110, 9206, 10880
Ama87I CYCGRG 5 cut(s) 2436, 3215, 3551, 4035, 8585
Aor51HI AGCGCT 2 cut(s) 9336, 9618
ApaLI GTGCAC 2 cut(s) 1262, 1425
ArsI GACNNNNNNTTYG 2 cut(s) 943, 975
AseI ATTAAT 3 cut(s) 515, 1964, 8622
AsiGI ACCGGT 1 cut(s) 8107
Asp700I GAANNNNTTC 6 cut(s) 107, 261, 433, 2574, 8190, 11121
Asp718I GGTACC 1 cut(s) 7513
AspA2I CCTAGG 1 cut(s) 9485
AsuC2I CCSGG 1 cut(s) 997
AsuII TTCGAA 3 cut(s) 949, 5795, 6774
AsuNHI GCTAGC 2 cut(s) 4723, 6325
AvaI CYCGRG 5 cut(s) 2436, 3215, 3551, 4035, 8585
AvrII CCTAGG 1 cut(s) 9485
AxyI CCTNAGG 1 cut(s) 4002
BaeGI GKGCMC 4 cut(s) 1266, 1429, 1918, 4042
BaeI ACNNNNGTAYC 6 cut(s) 6153, 6186, 6564, 6597, 8512, 8545
BalI TGGCCA 3 cut(s) 2379, 3977, 8738
BamHI GGATCC 3 cut(s) 2074, 4006, 10486
BanI GGYRCC 3 cut(s) 5041, 7513, 10003
BanII GRGCYC 2 cut(s) 2087, 11050
BarI GAAGNNNNNNTAC 2 cut(s) 6375, 6407
BauI CACGAG 3 cut(s) 8544, 10227, 10667
BbsI GAAGAC 9 cut(s) 953, 1835, 2252, 4257, 5314, 5358, 6843, 8681, 10808
Bbv12I GWGCWC 6 cut(s) 1266, 1429, 4498, 4798, 8077, 11050
BbvCI CCTCAGC 5 cut(s) 1119, 2760, 8097, 8592, 9367
BceAI ACGGC 8 cut(s) 806, 1835, 3528, 6616, 6799, 6819, 7195, 10356
BcgI CGANNNNNNTGC 6 cut(s) 3283, 3317, 7928, 7962, 10927, 10961
BciVI GTATCC 2 cut(s) 5981, 9166
BclI TGATCA 4 cut(s) 4767, 6406, 7042, 8577
BcnI CCSGG 1 cut(s) 997
BcuI ACTAGT 1 cut(s) 3419
BfoI RGCGCY 3 cut(s) 9311, 9338, 9620
BfrI CTTAAG 1 cut(s) 730
BfuAI ACCTGC 6 cut(s) 2756, 5168, 6938, 7184, 7747, 8962
BfuI GTATCC 2 cut(s) 5981, 9166
BglI GCCNNNNNGGC 1 cut(s) 9577
BglII AGATCT 6 cut(s) 2016, 2659, 5459, 6128, 7324, 8721
BlnI CCTAGG 1 cut(s) 9485
BlpI GCTNAGC 2 cut(s) 2739, 4229
BmeRI GACNNNNNGTC 2 cut(s) 3160, 5692
BmeT110I CYCGRG 5 cut(s) 2436, 3215, 3551, 4035, 8585
BmgBI CACGTC 3 cut(s) 2258, 10531, 10906
BmrI ACTGGG 2 cut(s) 2639, 6910
BmtI GCTAGC 2 cut(s) 4727, 6329
BmuI ACTGGG 2 cut(s) 2639, 6910
BoxI GACNNNNGTC 2 cut(s) 1019, 2292
BpiI GAAGAC 9 cut(s) 953, 1835, 2252, 4257, 5314, 5358, 6843, 8681, 10808
BplI GAGNNNNNCTC 4 cut(s) 9758, 9790, 10757, 10789
Bpu10I CCTNAGC 5 cut(s) 1119, 2760, 8097, 8592, 9367
Bpu1102I GCTNAGC 2 cut(s) 2739, 4229
Bpu14I TTCGAA 3 cut(s) 949, 5795, 6774
BpuMI CCSGG 1 cut(s) 997
Bsa29I ATCGAT 2 cut(s) 991, 5635
BsaAI YACGTR 2 cut(s) 8159, 9452
BsaBI GATNNNNATC 6 cut(s) 138, 2015, 3071, 3133, 6273, 7395
BsaI GGTCTC 5 cut(s) 6752, 6937, 7681, 8235, 9660
BsaWI WCCGGW 4 cut(s) 4236, 8107, 8304, 10044
BsaXI ACNNNNNCTCC 8 cut(s) 6201, 6231, 6882, 6912, 7220, 7250, 7819, 7849
Bse118I RCCGGY 3 cut(s) 8107, 8328, 9933
Bse21I CCTNAGG 1 cut(s) 4002
Bse8I GATNNNNATC 6 cut(s) 138, 2015, 3071, 3133, 6273, 7395
BseCI ATCGAT 2 cut(s) 991, 5635
BseJI GATNNNNATC 6 cut(s) 138, 2015, 3071, 3133, 6273, 7395
BseRI GAGGAG 5 cut(s) 1604, 4128, 9178, 9545, 9684
BseSI GKGCMC 4 cut(s) 1266, 1429, 1918, 4042
BseYI CCCAGC 4 cut(s) 3251, 4759, 9434, 9619
Bsh1236I CGCG 2 cut(s) 2877, 10762
Bsh1285I CGRYCG 2 cut(s) 5734, 6829
BshNI GGYRCC 3 cut(s) 5041, 7513, 10003
BshTI ACCGGT 1 cut(s) 8107
BshVI ATCGAT 2 cut(s) 991, 5635
BsiEI CGRYCG 2 cut(s) 5734, 6829
BsiHKAI GWGCWC 6 cut(s) 1266, 1429, 4498, 4798, 8077, 11050
BsiHKCI CYCGRG 5 cut(s) 2436, 3215, 3551, 4035, 8585
BsiSI CCGG 8 cut(s) 997, 4237, 8108, 8305, 8329, 8371, 9934, 10045
BsmBI CGTCTC 1 cut(s) 6086
BsmI GAATGC 2 cut(s) 3238, 4199
Bso31I GGTCTC 5 cut(s) 6752, 6937, 7681, 8235, 9660
BsoBI CYCGRG 5 cut(s) 2436, 3215, 3551, 4035, 8585
Bsp119I TTCGAA 3 cut(s) 949, 5795, 6774
Bsp1286I GDGCHC 9 cut(s) 1266, 1429, 1918, 2087, 4042, 4498, 4798, 8077, 11050
Bsp1407I TGTACA 2 cut(s) 5524, 8947
Bsp1720I GCTNAGC 2 cut(s) 2739, 4229
Bsp19I CCATGG 4 cut(s) 2103, 3978, 4194, 4656
BspDI ATCGAT 2 cut(s) 991, 5635
BspFNI CGCG 2 cut(s) 2877, 10762
BspHI TCATGA 7 cut(s) 1677, 6589, 6655, 10159, 10747, 11125, 11149
BspMAI CTGCAG 6 cut(s) 396, 2337, 5467, 7645, 8002, 10950
BspMI ACCTGC 6 cut(s) 2756, 5168, 6938, 7184, 7747, 8962
BspOI GCTAGC 2 cut(s) 4727, 6329
BspQI GCTCTTC 2 cut(s) 2092, 4503
BspT104I TTCGAA 3 cut(s) 949, 5795, 6774
BspT107I GGYRCC 3 cut(s) 5041, 7513, 10003
BspTI CTTAAG 1 cut(s) 730
BspTNI GGTCTC 5 cut(s) 6752, 6937, 7681, 8235, 9660
BsrBI CCGCTC 1 cut(s) 11069
BsrFI RCCGGY 3 cut(s) 8107, 8328, 9933
BsrGI TGTACA 2 cut(s) 5524, 8947
BssAI RCCGGY 3 cut(s) 8107, 8328, 9933
BssNAI GTATAC 1 cut(s) 5615
BssSI CACGAG 3 cut(s) 8544, 10227, 10667
Bst1107I GTATAC 1 cut(s) 5615
Bst2BI CACGAG 3 cut(s) 8544, 10227, 10667
Bst6I CTCTTC 9 cut(s) 495, 2092, 2115, 4113, 4503, 4701, 7141, 8157, 10194
BstAFI CTTAAG 1 cut(s) 730
BstAPI GCANNNNNTGC 2 cut(s) 2642, 8384
BstAUI TGTACA 2 cut(s) 5524, 8947
BstBAI YACGTR 2 cut(s) 8159, 9452
BstBI TTCGAA 3 cut(s) 949, 5795, 6774
BstDSI CCRYGG 4 cut(s) 2103, 3978, 4194, 4656
BstEII GGTNACC 1 cut(s) 7067
BstENI CCTNNNNNAGG 6 cut(s) 102, 6774, 7191, 8461, 8987, 9484
BstFNI CGCG 2 cut(s) 2877, 10762
BstH2I RGCGCY 3 cut(s) 9311, 9338, 9620
BstMCI CGRYCG 2 cut(s) 5734, 6829
BstPAI GACNNNNGTC 2 cut(s) 1019, 2292
BstPI GGTNACC 1 cut(s) 7067
BstSLI GKGCMC 4 cut(s) 1266, 1429, 1918, 4042
BstUI CGCG 2 cut(s) 2877, 10762
BstV2I GAAGAC 9 cut(s) 953, 1835, 2252, 4257, 5314, 5358, 6843, 8681, 10808
BstXI CCANNNNNNTGG 2 cut(s) 2617, 9869
BstZ17I GTATAC 1 cut(s) 5615
Bsu15I ATCGAT 2 cut(s) 991, 5635
Bsu36I CCTNAGG 1 cut(s) 4002
BsuI GTATCC 2 cut(s) 5981, 9166
BsuTUI ATCGAT 2 cut(s) 991, 5635
BtgI CCRYGG 4 cut(s) 2103, 3978, 4194, 4656
BtrI CACGTC 3 cut(s) 2258, 10531, 10906
BtsI GCAGTG 7 cut(s) 3095, 3838, 4946, 6199, 7230, 7362, 8955
BveI ACCTGC 6 cut(s) 2756, 5168, 6938, 7184, 7747, 8962
CaiI CAGNNNCTG 8 cut(s) 1813, 5962, 7481, 7628, 8384, 9110, 9206, 10880
CciI TCATGA 7 cut(s) 1677, 6589, 6655, 10159, 10747, 11125, 11149
Cfr10I RCCGGY 3 cut(s) 8107, 8328, 9933
ClaI ATCGAT 2 cut(s) 991, 5635
CseI GACGC 6 cut(s) 2769, 3447, 4234, 4581, 7454, 8696
CsiI ACCWGGT 3 cut(s) 5899, 7153, 10602
CspAI ACCGGT 1 cut(s) 8107
CspCI CAANNNNNGTGG 4 cut(s) 3886, 3921, 5421, 5456
DraI TTTAAA 7 cut(s) 1627, 1830, 2982, 6082, 9942, 10360, 10509
DrdI GACNNNNNNGTC 2 cut(s) 2779, 6847
DriI GACNNNNNGTC 2 cut(s) 3160, 5692
DseDI GACNNNNNNGTC 2 cut(s) 2779, 6847
EaeI YGGCCR 5 cut(s) 2377, 3975, 7180, 8368, 8736
Eam1104I CTCTTC 9 cut(s) 495, 2092, 2115, 4113, 4503, 4701, 7141, 8157, 10194
Eam1105I GACNNNNNGTC 2 cut(s) 3160, 5692
EarI CTCTTC 9 cut(s) 495, 2092, 2115, 4113, 4503, 4701, 7141, 8157, 10194
Ecl136II GAGCTC 1 cut(s) 11048
Eco147I AGGCCT 2 cut(s) 1734, 4848
Eco24I GRGCYC 2 cut(s) 2087, 11050
Eco31I GGTCTC 5 cut(s) 6752, 6937, 7681, 8235, 9660
Eco32I GATATC 4 cut(s) 3287, 4429, 7273, 8044
Eco47III AGCGCT 2 cut(s) 9336, 9618
Eco53kI GAGCTC 1 cut(s) 11048
Eco81I CCTNAGG 1 cut(s) 4002
Eco88I CYCGRG 5 cut(s) 2436, 3215, 3551, 4035, 8585
Eco91I GGTNACC 1 cut(s) 7067
EcoICRI GAGCTC 1 cut(s) 11048
EcoNI CCTNNNNNAGG 6 cut(s) 102, 6774, 7191, 8461, 8987, 9484
EcoO109I RGGNCCY 4 cut(s) 3667, 5121, 7196, 9089
EcoO65I GGTNACC 1 cut(s) 7067
EcoRI GAATTC 3 cut(s) 951, 8712, 9499
EcoRV GATATC 4 cut(s) 3287, 4429, 7273, 8044
EcoT22I ATGCAT 8 cut(s) 595, 809, 1619, 1802, 3795, 4075, 8449, 8817
EcoT38I GRGCYC 2 cut(s) 2087, 11050
Esp3I CGTCTC 1 cut(s) 6086
FauI CCCGC 5 cut(s) 1643, 3942, 5568, 10101, 10767
FauNDI CATATG 2 cut(s) 2466, 9405
FbaI TGATCA 4 cut(s) 4767, 6406, 7042, 8577
FblI GTMKAC 3 cut(s) 4415, 5614, 10332
FriOI GRGCYC 2 cut(s) 2087, 11050
FspAI RTGCGCAY 1 cut(s) 5216
FspI TGCGCA 2 cut(s) 5216, 10145
GsaI CCCAGC 4 cut(s) 3255, 4763, 9438, 9623
HaeII RGCGCY 3 cut(s) 9311, 9338, 9620
HapII CCGG 8 cut(s) 997, 4237, 8108, 8305, 8329, 8371, 9934, 10045
HgaI GACGC 6 cut(s) 2769, 3447, 4234, 4581, 7454, 8696
HincII GTYRAC 5 cut(s) 5425, 7101, 7432, 7633, 8113
HindII GTYRAC 5 cut(s) 5425, 7101, 7432, 7633, 8113
HindIII AAGCTT 4 cut(s) 1275, 1521, 5703, 9887
HpaI GTTAAC 1 cut(s) 7432
HpaII CCGG 8 cut(s) 997, 4237, 8108, 8305, 8329, 8371, 9934, 10045
Hpy99I CGWCG 2 cut(s) 2922, 8712
HpyCH4IV ACGT 6 cut(s) 2257, 8158, 9451, 10530, 10553, 10905
HpySE526I ACGT 6 cut(s) 2257, 8158, 9451, 10530, 10553, 10905
KflI GGGWCCC 1 cut(s) 3667
KpnI GGTACC 1 cut(s) 7517
KroI GCCGGC 1 cut(s) 9933
KroNI GCCGGC 1 cut(s) 9935
Ksp22I TGATCA 4 cut(s) 4767, 6406, 7042, 8577
KspAI GTTAAC 1 cut(s) 7432
LguI GCTCTTC 2 cut(s) 2092, 4503
MabI ACCWGGT 3 cut(s) 5899, 7153, 10602
MaeII ACGT 6 cut(s) 2257, 8158, 9451, 10530, 10553, 10905
MbiI CCGCTC 1 cut(s) 11069
MfeI CAATTG 2 cut(s) 5570, 7893
MhlI GDGCHC 9 cut(s) 1266, 1429, 1918, 2087, 4042, 4498, 4798, 8077, 11050
MlsI TGGCCA 3 cut(s) 2379, 3977, 8738
MluNI TGGCCA 3 cut(s) 2379, 3977, 8738
Mox20I TGGCCA 3 cut(s) 2379, 3977, 8738
Mph1103I ATGCAT 8 cut(s) 595, 809, 1619, 1802, 3795, 4075, 8449, 8817
MroNI GCCGGC 1 cut(s) 9933
MroXI GAANNNNTTC 6 cut(s) 107, 261, 433, 2574, 8190, 11121
MscI TGGCCA 3 cut(s) 2379, 3977, 8738
Msp20I TGGCCA 3 cut(s) 2379, 3977, 8738
MspA1I CMGCKG 5 cut(s) 3251, 6158, 7268, 8150, 9371
MspCI CTTAAG 1 cut(s) 730
MspI CCGG 8 cut(s) 997, 4237, 8108, 8305, 8329, 8371, 9934, 10045
MunI CAATTG 2 cut(s) 5570, 7893
Mva1269I GAATGC 2 cut(s) 3238, 4199
MvnI CGCG 2 cut(s) 2877, 10762
NaeI GCCGGC 1 cut(s) 9935
NciI CCSGG 1 cut(s) 997
NcoI CCATGG 4 cut(s) 2103, 3978, 4194, 4656
NdeI CATATG 2 cut(s) 2466, 9405
NgoMIV GCCGGC 1 cut(s) 9933
NheI GCTAGC 2 cut(s) 4723, 6325
NmeAIII GCCGAG 1 cut(s) 769
NsbI TGCGCA 2 cut(s) 5216, 10145
NsiI ATGCAT 8 cut(s) 595, 809, 1619, 1802, 3795, 4075, 8449, 8817
NspV TTCGAA 3 cut(s) 949, 5795, 6774
OliI CACNNNNGTG 5 cut(s) 1259, 2615, 5294, 9867, 10231
PaeI GCATGC 3 cut(s) 807, 9539, 10150
PaeR7I CTCGAG 2 cut(s) 3215, 3551
PagI TCATGA 7 cut(s) 1677, 6589, 6655, 10159, 10747, 11125, 11149
PaqCI CACCTGC 2 cut(s) 5168, 6938
PasI CCCWGGG 1 cut(s) 1543
PceI AGGCCT 2 cut(s) 1734, 4848
PciI ACATGT 5 cut(s) 2064, 2291, 4345, 4518, 7014
PciSI GCTCTTC 2 cut(s) 2092, 4503
PctI GAATGC 2 cut(s) 3238, 4199
PdiI GCCGGC 1 cut(s) 9935
PdmI GAANNNNTTC 6 cut(s) 107, 261, 433, 2574, 8190, 11121
PflMI CCANNNNNTGG 4 cut(s) 3984, 6289, 7160, 9546
PfoI TCCNGGA 1 cut(s) 197
PinAI ACCGGT 1 cut(s) 8107
Ppu21I YACGTR 2 cut(s) 8159, 9452
PpuMI RGGWCCY 4 cut(s) 3667, 5121, 7196, 9089
PscI ACATGT 5 cut(s) 2064, 2291, 4345, 4518, 7014
PshAI GACNNNNGTC 2 cut(s) 1019, 2292
PshBI ATTAAT 3 cut(s) 515, 1964, 8622
PsiI TTATAA 1 cut(s) 10134
Psp124BI GAGCTC 1 cut(s) 11050
Psp5II RGGWCCY 4 cut(s) 3667, 5121, 7196, 9089
PspEI GGTNACC 1 cut(s) 7067
PspFI CCCAGC 4 cut(s) 3251, 4759, 9434, 9619
PspPPI RGGWCCY 4 cut(s) 3667, 5121, 7196, 9089
PspXI VCTCGAGB 1 cut(s) 3551
PsrI GAACNNNNNNTAC 6 cut(s) 3334, 3366, 6210, 6242, 11121, 11153
PstI CTGCAG 6 cut(s) 396, 2337, 5467, 7645, 8002, 10950
PstNI CAGNNNCTG 8 cut(s) 1813, 5962, 7481, 7628, 8384, 9110, 9206, 10880
PvuII CAGCTG 5 cut(s) 3251, 6158, 7268, 8150, 9371
SacI GAGCTC 1 cut(s) 11050
SapI GCTCTTC 2 cut(s) 2092, 4503
SduI GDGCHC 9 cut(s) 1266, 1429, 1918, 2087, 4042, 4498, 4798, 8077, 11050
SexAI ACCWGGT 3 cut(s) 5899, 7153, 10602
Sfr274I CTCGAG 2 cut(s) 3215, 3551
SfuI TTCGAA 3 cut(s) 949, 5795, 6774
SlaI CTCGAG 2 cut(s) 3215, 3551
SpeI ACTAGT 1 cut(s) 3419
SphI GCATGC 3 cut(s) 807, 9539, 10150
SseBI AGGCCT 2 cut(s) 1734, 4848
SspI AATATT 4 cut(s) 3210, 4674, 7060, 10642
SstI GAGCTC 1 cut(s) 11050
StuI AGGCCT 2 cut(s) 1734, 4848
TaiI ACGT 6 cut(s) 2260, 8161, 9454, 10533, 10556, 10908
TaqII GACCGA 3 cut(s) 4156, 7187, 8259
TauI GCSGC 6 cut(s) 1606, 1670, 3340, 6834, 8431, 10153
TspGWI ACGGA 5 cut(s) 266, 692, 2180, 9185, 10703
Van91I CCANNNNNTGG 4 cut(s) 3984, 6289, 7160, 9546
Vha464I CTTAAG 1 cut(s) 730
VneI GTGCAC 2 cut(s) 1262, 1425
VspI ATTAAT 3 cut(s) 515, 1964, 8622
XagI CCTNNNNNAGG 6 cut(s) 102, 6774, 7191, 8461, 8987, 9484
XbaI TCTAGA 2 cut(s) 229, 6970
XcmI CCANNNNNNNNNTGG 3 cut(s) 3907, 4985, 8636
XhoI CTCGAG 2 cut(s) 3215, 3551
XmaJI CCTAGG 1 cut(s) 9485
XmiI GTMKAC 3 cut(s) 4415, 5614, 10332
XmnI GAANNNNTTC 6 cut(s) 107, 261, 433, 2574, 8190, 11121
Zsp2I ATGCAT 8 cut(s) 595, 809, 1619, 1802, 3795, 4075, 8449, 8817
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.