E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G55860 AT1G70320 |
| fragaria_vesca | FvH4_3g42950 FvH4_3g42950 FvH4_3g42950 FvH4_3g42950 |
| malus_domestica | MD03G1027100.v1.1 MD11G1031000.v1.1 |
| prunus_persica | Prupe.6G024400_v2.0.a1 Prupe.6G024400_v2.0.a1 |
| pyrus_communis | pycom03g02210 pycom11g02630 |
| rosa_chinensis | RchiOBHm_Chr5g0077001 |
| rosa_laevigata | RLG00000036641 |
| rosa_multiflora | Rmu_sc0003323.1_g000004 |
| rosa_roxburghii | Rroxscaffold_1G00005140 |
| rosa_rugosa | Rorug05G0450000 Rorug05G0450000 Rorug05G0450100 |
| rosa_samantha | Rh5AG504800 Rh5BG526500 Rh5CG550300 Rh5DG538700 |
| rosa_wichuraiana | Rw5G047160 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 6942, 7229 |
| AarI | CACCTGC | 2 cut(s) | 7262, 7508 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 7171 |
| AatII | GACGTC | 1 cut(s) | 7159 |
| Acc16I | TGCGCA | 1 cut(s) | 7577 |
| Acc36I | ACCTGC | 8 cut(s) | 493, 2018, 5423, 5719, 7262, 7508, 9808, 9837 |
| Acc65I | GGTACC | 2 cut(s) | 111, 3686 |
| AccB1I | GGYRCC | 5 cut(s) | 111, 3686, 5359, 7864, 10867 |
| AccB7I | CCANNNNNTGG | 4 cut(s) | 4287, 6667, 7484, 10407 |
| AccBSI | CCGCTC | 1 cut(s) | 8255 |
| AccI | GTMKAC | 6 cut(s) | 5932, 7129, 11196, 11628, 11973, 12401 |
| AccII | CGCG | 5 cut(s) | 570, 11092, 11238, 11524, 11670 |
| AccIII | TCCGGA | 4 cut(s) | 8356, 8884, 10254, 12115 |
| AclI | AACGTT | 1 cut(s) | 3710 |
| AcoI | YGGCCR | 7 cut(s) | 693, 4278, 5043, 7486, 7504, 8686, 9214 |
| AcvI | CACGTG | 1 cut(s) | 12059 |
| AcyI | GRCGYC | 1 cut(s) | 7156 |
| AdeI | CACNNNGTG | 3 cut(s) | 5306, 9383, 10407 |
| AfeI | AGCGCT | 1 cut(s) | 4245 |
| AflIII | ACRYGT | 4 cut(s) | 4648, 4821, 7039, 7338 |
| AhlI | ACTAGT | 3 cut(s) | 1204, 3722, 6293 |
| AjiI | CACGTC | 1 cut(s) | 2555 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 783, 815, 10352, 10384, 11173, 11205 |
| AleI | CACNNNNGTG | 1 cut(s) | 1559 |
| Alw44I | GTGCAC | 2 cut(s) | 1722, 5322 |
| AlwNI | CAGNNNCTG | 7 cut(s) | 691, 977, 1604, 2110, 2942, 6289, 10582 |
| Ama87I | CYCGRG | 3 cut(s) | 2733, 4338, 7287 |
| Aor13HI | TCCGGA | 4 cut(s) | 8356, 8884, 10254, 12115 |
| Aor51HI | AGCGCT | 1 cut(s) | 4245 |
| ApaI | GGGCCC | 1 cut(s) | 1297 |
| ApaLI | GTGCAC | 2 cut(s) | 1722, 5322 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1243, 1275 |
| AseI | ATTAAT | 6 cut(s) | 806, 2261, 3666, 6081, 9468, 12021 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 552, 724, 2871, 12051 |
| Asp718I | GGTACC | 2 cut(s) | 111, 3686 |
| AspA2I | CCTAGG | 1 cut(s) | 3536 |
| AspLEI | GCGC | 7 cut(s) | 2268, 4246, 4345, 7578, 7922, 8308, 8836 |
| AsuC2I | CCSGG | 4 cut(s) | 4339, 4340, 7288, 7289 |
| AsuII | TTCGAA | 1 cut(s) | 1249 |
| AvaI | CYCGRG | 3 cut(s) | 2733, 4338, 7287 |
| AvrII | CCTAGG | 1 cut(s) | 3536 |
| AxyI | CCTNAGG | 2 cut(s) | 7770, 9432 |
| BaeGI | GKGCMC | 3 cut(s) | 1297, 1726, 5326 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 2217, 2250, 6888, 6921 |
| BalI | TGGCCA | 2 cut(s) | 4280, 7506 |
| BamHI | GGATCC | 4 cut(s) | 4309, 9558, 11350, 11782 |
| BanI | GGYRCC | 5 cut(s) | 111, 3686, 5359, 7864, 10867 |
| BanII | GRGCYC | 4 cut(s) | 48, 1297, 10493, 12346 |
| BauI | CACGAG | 1 cut(s) | 11963 |
| BbrPI | CACGTG | 1 cut(s) | 12059 |
| BbvCI | CCTCAGC | 3 cut(s) | 1419, 3057, 4305 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 7369, 7403, 8578, 8612, 9106, 9140 |
| BciVI | GTATCC | 5 cut(s) | 4615, 4939, 7267, 9661, 12498 |
| BclI | TGATCA | 8 cut(s) | 3772, 5085, 5620, 6463, 7030, 7366, 9423, 11986 |
| BcnI | CCSGG | 4 cut(s) | 4339, 4340, 7288, 7289 |
| BcuI | ACTAGT | 3 cut(s) | 1204, 3722, 6293 |
| BfoI | RGCGCY | 3 cut(s) | 4247, 4346, 7923 |
| BfuAI | ACCTGC | 8 cut(s) | 493, 2018, 5423, 5719, 7262, 7508, 9808, 9837 |
| BfuI | GTATCC | 5 cut(s) | 4615, 4939, 7267, 9661, 12498 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 10438 |
| BglII | AGATCT | 4 cut(s) | 2956, 5777, 9515, 9567 |
| BlnI | CCTAGG | 1 cut(s) | 3536 |
| BlpI | GCTNAGC | 1 cut(s) | 7926 |
| BmcAI | AGTACT | 1 cut(s) | 3223 |
| BmeT110I | CYCGRG | 3 cut(s) | 2733, 4338, 7287 |
| BmgBI | CACGTC | 1 cut(s) | 2555 |
| BmrI | ACTGGG | 5 cut(s) | 1017, 2936, 3128, 4367, 7234 |
| BmuI | ACTGGG | 5 cut(s) | 1017, 2936, 3128, 4367, 7234 |
| BoxI | GACNNNNGTC | 2 cut(s) | 1319, 2589 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 12053, 12085, 12389, 12421 |
| Bpu10I | CCTNAGC | 5 cut(s) | 1419, 3057, 4247, 4305, 7542 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 7926 |
| Bpu14I | TTCGAA | 1 cut(s) | 1249 |
| BpuMI | CCSGG | 4 cut(s) | 4339, 4340, 7288, 7289 |
| Bsa29I | ATCGAT | 2 cut(s) | 5953, 6120 |
| BsaAI | YACGTR | 4 cut(s) | 2285, 5327, 7042, 12059 |
| BsaBI | GATNNNNATC | 4 cut(s) | 429, 1527, 3433, 9715 |
| BsaHI | GRCGYC | 1 cut(s) | 7156 |
| BsaWI | WCCGGW | 9 cut(s) | 1186, 1463, 5380, 8356, 8884, 10254, 10908, 10946, 12115 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 7206, 7236, 7239, 7269 |
| Bse118I | RCCGGY | 5 cut(s) | 3264, 7488, 8646, 9174, 12464 |
| Bse21I | CCTNAGG | 2 cut(s) | 7770, 9432 |
| Bse8I | GATNNNNATC | 4 cut(s) | 429, 1527, 3433, 9715 |
| BseAI | TCCGGA | 4 cut(s) | 8356, 8884, 10254, 12115 |
| BseCI | ATCGAT | 2 cut(s) | 5953, 6120 |
| BseJI | GATNNNNATC | 4 cut(s) | 429, 1527, 3433, 9715 |
| BseRI | GAGGAG | 8 cut(s) | 1901, 2266, 3264, 4431, 8286, 8814, 10406, 10548 |
| BseSI | GKGCMC | 3 cut(s) | 1297, 1726, 5326 |
| BseYI | CCCAGC | 3 cut(s) | 3554, 5077, 10295 |
| BsgI | GTGCAG | 7 cut(s) | 580, 837, 2952, 4337, 4683, 7428, 7652 |
| Bsh1236I | CGCG | 5 cut(s) | 570, 11092, 11238, 11524, 11670 |
| BshNI | GGYRCC | 5 cut(s) | 111, 3686, 5359, 7864, 10867 |
| BshVI | ATCGAT | 2 cut(s) | 5953, 6120 |
| BsiHKCI | CYCGRG | 3 cut(s) | 2733, 4338, 7287 |
| BsmI | GAATGC | 5 cut(s) | 1107, 3541, 10813, 11016, 11448 |
| BsoBI | CYCGRG | 3 cut(s) | 2733, 4338, 7287 |
| Bsp119I | TTCGAA | 1 cut(s) | 1249 |
| Bsp120I | GGGCCC | 1 cut(s) | 1293 |
| Bsp13I | TCCGGA | 4 cut(s) | 8356, 8884, 10254, 12115 |
| Bsp1407I | TGTACA | 5 cut(s) | 5842, 9374, 10534, 12184, 12449 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 7926 |
| Bsp19I | CCATGG | 6 cut(s) | 2400, 3114, 3682, 4281, 6666, 10039 |
| BspDI | ATCGAT | 2 cut(s) | 5953, 6120 |
| BspEI | TCCGGA | 4 cut(s) | 8356, 8884, 10254, 12115 |
| BspFNI | CGCG | 5 cut(s) | 570, 11092, 11238, 11524, 11670 |
| BspHI | TCATGA | 3 cut(s) | 1974, 3775, 12421 |
| BspMAI | CTGCAG | 6 cut(s) | 687, 1656, 2634, 4726, 5785, 9601 |
| BspMI | ACCTGC | 8 cut(s) | 493, 2018, 5423, 5719, 7262, 7508, 9808, 9837 |
| BspQI | GCTCTTC | 5 cut(s) | 57, 213, 558, 6131, 9365 |
| BspT104I | TTCGAA | 1 cut(s) | 1249 |
| BspT107I | GGYRCC | 5 cut(s) | 111, 3686, 5359, 7864, 10867 |
| BsrBI | CCGCTC | 1 cut(s) | 8255 |
| BsrFI | RCCGGY | 5 cut(s) | 3264, 7488, 8646, 9174, 12464 |
| BsrGI | TGTACA | 5 cut(s) | 5842, 9374, 10534, 12184, 12449 |
| BssAI | RCCGGY | 5 cut(s) | 3264, 7488, 8646, 9174, 12464 |
| BssNAI | GTATAC | 4 cut(s) | 5933, 11197, 11629, 12402 |
| BssNI | GRCGYC | 1 cut(s) | 7156 |
| BssSI | CACGAG | 1 cut(s) | 11963 |
| Bst1107I | GTATAC | 4 cut(s) | 5933, 11197, 11629, 12402 |
| Bst2BI | CACGAG | 1 cut(s) | 11963 |
| BstACI | GRCGYC | 1 cut(s) | 7156 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 2939, 5266 |
| BstAUI | TGTACA | 5 cut(s) | 5842, 9374, 10534, 12184, 12449 |
| BstBAI | YACGTR | 4 cut(s) | 2285, 5327, 7042, 12059 |
| BstBI | TTCGAA | 1 cut(s) | 1249 |
| BstDSI | CCRYGG | 9 cut(s) | 315, 2400, 3114, 3682, 4281, 6666, 10039, 10871, 11346 |
| BstEII | GGTNACC | 1 cut(s) | 7391 |
| BstENI | CCTNNNNNAGG | 7 cut(s) | 393, 7098, 7515, 8779, 9307, 9833, 9886 |
| BstFNI | CGCG | 5 cut(s) | 570, 11092, 11238, 11524, 11670 |
| BstH2I | RGCGCY | 3 cut(s) | 4247, 4346, 7923 |
| BstHHI | GCGC | 7 cut(s) | 2268, 4246, 4345, 7578, 7922, 8308, 8836 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 1319, 2589 |
| BstPI | GGTNACC | 1 cut(s) | 7391 |
| BstSLI | GKGCMC | 3 cut(s) | 1297, 1726, 5326 |
| BstUI | CGCG | 5 cut(s) | 570, 11092, 11238, 11524, 11670 |
| BstZ17I | GTATAC | 4 cut(s) | 5933, 11197, 11629, 12402 |
| Bsu15I | ATCGAT | 2 cut(s) | 5953, 6120 |
| Bsu36I | CCTNAGG | 2 cut(s) | 7770, 9432 |
| BsuI | GTATCC | 5 cut(s) | 4615, 4939, 7267, 9661, 12498 |
| BsuTUI | ATCGAT | 2 cut(s) | 5953, 6120 |
| BtgI | CCRYGG | 9 cut(s) | 315, 2400, 3114, 3682, 4281, 6666, 10039, 10871, 11346 |
| BtgZI | GCGATG | 2 cut(s) | 1170, 10778 |
| BtrI | CACGTC | 1 cut(s) | 2555 |
| BveI | ACCTGC | 8 cut(s) | 493, 2018, 5423, 5719, 7262, 7508, 9808, 9837 |
| CaiI | CAGNNNCTG | 7 cut(s) | 691, 977, 1604, 2110, 2942, 6289, 10582 |
| CciI | TCATGA | 3 cut(s) | 1974, 3775, 12421 |
| CfoI | GCGC | 7 cut(s) | 2268, 4246, 4345, 7578, 7922, 8308, 8836 |
| Cfr10I | RCCGGY | 5 cut(s) | 3264, 7488, 8646, 9174, 12464 |
| Cfr9I | CCCGGG | 2 cut(s) | 4338, 7287 |
| ClaI | ATCGAT | 2 cut(s) | 5953, 6120 |
| CpoI | CGGWCCG | 1 cut(s) | 10949 |
| CseI | GACGC | 5 cut(s) | 343, 9395, 9542, 11003, 11435 |
| CsiI | ACCWGGT | 3 cut(s) | 6226, 10345, 11898 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 5739, 5774 |
| CspI | CGGWCCG | 1 cut(s) | 10949 |
| DraI | TTTAAA | 7 cut(s) | 393, 1924, 2319, 2698, 6409, 11224, 11656 |
| DraIII | CACNNNGTG | 3 cut(s) | 5306, 9383, 10407 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 7171 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 7171 |
| EaeI | YGGCCR | 7 cut(s) | 693, 4278, 5043, 7486, 7504, 8686, 9214 |
| Ecl136II | GAGCTC | 3 cut(s) | 46, 10491, 12344 |
| Eco147I | AGGCCT | 2 cut(s) | 7234, 7768 |
| Eco24I | GRGCYC | 4 cut(s) | 48, 1297, 10493, 12346 |
| Eco32I | GATATC | 2 cut(s) | 4732, 7759 |
| Eco47III | AGCGCT | 1 cut(s) | 4245 |
| Eco53kI | GAGCTC | 3 cut(s) | 46, 10491, 12344 |
| Eco72I | CACGTG | 1 cut(s) | 12059 |
| Eco81I | CCTNAGG | 2 cut(s) | 7770, 9432 |
| Eco88I | CYCGRG | 3 cut(s) | 2733, 4338, 7287 |
| Eco91I | GGTNACC | 1 cut(s) | 7391 |
| EcoICRI | GAGCTC | 3 cut(s) | 46, 10491, 12344 |
| EcoNI | CCTNNNNNAGG | 7 cut(s) | 393, 7098, 7515, 8779, 9307, 9833, 9886 |
| EcoO109I | RGGNCCY | 1 cut(s) | 5915 |
| EcoO65I | GGTNACC | 1 cut(s) | 7391 |
| EcoRI | GAATTC | 5 cut(s) | 1251, 7621, 7776, 9901, 10360 |
| EcoRV | GATATC | 2 cut(s) | 4732, 7759 |
| EcoT22I | ATGCAT | 5 cut(s) | 1916, 2099, 2167, 4098, 10813 |
| EcoT38I | GRGCYC | 4 cut(s) | 48, 1297, 10493, 12346 |
| FauI | CCCGC | 1 cut(s) | 7422 |
| FauNDI | CATATG | 4 cut(s) | 622, 7363, 12337, 12454 |
| FbaI | TGATCA | 8 cut(s) | 3772, 5085, 5620, 6463, 7030, 7366, 9423, 11986 |
| FblI | GTMKAC | 6 cut(s) | 5932, 7129, 11196, 11628, 11973, 12401 |
| FriOI | GRGCYC | 4 cut(s) | 48, 1297, 10493, 12346 |
| FspI | TGCGCA | 1 cut(s) | 7577 |
| GlaI | GCGC | 7 cut(s) | 2267, 4245, 4344, 7577, 7921, 8307, 8835 |
| GsaI | CCCAGC | 3 cut(s) | 3558, 5081, 10299 |
| HaeII | RGCGCY | 3 cut(s) | 4247, 4346, 7923 |
| HgaI | GACGC | 5 cut(s) | 343, 9395, 9542, 11003, 11435 |
| HhaI | GCGC | 7 cut(s) | 2268, 4246, 4345, 7578, 7922, 8308, 8836 |
| Hin1I | GRCGYC | 1 cut(s) | 7156 |
| Hin6I | GCGC | 7 cut(s) | 2266, 4244, 4343, 7576, 7920, 8306, 8834 |
| HinP1I | GCGC | 7 cut(s) | 2266, 4244, 4343, 7576, 7920, 8306, 8834 |
| HincII | GTYRAC | 9 cut(s) | 1094, 2367, 3457, 4396, 7594, 7957, 8431, 8959, 9730 |
| HindII | GTYRAC | 9 cut(s) | 1094, 2367, 3457, 4396, 7594, 7957, 8431, 8959, 9730 |
| HindIII | AAGCTT | 4 cut(s) | 1575, 4595, 6021, 10751 |
| Hpy99I | CGWCG | 7 cut(s) | 1806, 3219, 3645, 7158, 7161, 9558, 10974 |
| Hsp92I | GRCGYC | 1 cut(s) | 7156 |
| HspAI | GCGC | 7 cut(s) | 2266, 4244, 4343, 7576, 7920, 8306, 8834 |
| Kpn2I | TCCGGA | 4 cut(s) | 8356, 8884, 10254, 12115 |
| KpnI | GGTACC | 2 cut(s) | 115, 3690 |
| KroI | GCCGGC | 1 cut(s) | 3264 |
| KroNI | GCCGGC | 1 cut(s) | 3266 |
| Ksp22I | TGATCA | 8 cut(s) | 3772, 5085, 5620, 6463, 7030, 7366, 9423, 11986 |
| LguI | GCTCTTC | 5 cut(s) | 57, 213, 558, 6131, 9365 |
| MabI | ACCWGGT | 3 cut(s) | 6226, 10345, 11898 |
| MbiI | CCGCTC | 1 cut(s) | 8255 |
| MfeI | CAATTG | 7 cut(s) | 83, 158, 3945, 7571, 8211, 8682, 9210 |
| MlsI | TGGCCA | 2 cut(s) | 4280, 7506 |
| MluNI | TGGCCA | 2 cut(s) | 4280, 7506 |
| Mox20I | TGGCCA | 2 cut(s) | 4280, 7506 |
| Mph1103I | ATGCAT | 5 cut(s) | 1916, 2099, 2167, 4098, 10813 |
| MroI | TCCGGA | 4 cut(s) | 8356, 8884, 10254, 12115 |
| MroNI | GCCGGC | 1 cut(s) | 3264 |
| MroXI | GAANNNNTTC | 4 cut(s) | 552, 724, 2871, 12051 |
| MscI | TGGCCA | 2 cut(s) | 4280, 7506 |
| MslI | CAYNNNNRTG | 9 cut(s) | 1399, 1559, 2170, 2346, 6327, 6726, 6998, 9498, 11967 |
| Msp20I | TGGCCA | 2 cut(s) | 4280, 7506 |
| MspA1I | CMGCKG | 9 cut(s) | 1601, 1657, 3554, 4721, 5107, 5626, 6482, 10232, 10954 |
| MunI | CAATTG | 7 cut(s) | 83, 158, 3945, 7571, 8211, 8682, 9210 |
| Mva1269I | GAATGC | 5 cut(s) | 1107, 3541, 10813, 11016, 11448 |
| MvnI | CGCG | 5 cut(s) | 570, 11092, 11238, 11524, 11670 |
| NaeI | GCCGGC | 1 cut(s) | 3266 |
| NciI | CCSGG | 4 cut(s) | 4339, 4340, 7288, 7289 |
| NcoI | CCATGG | 6 cut(s) | 2400, 3114, 3682, 4281, 6666, 10039 |
| NdeI | CATATG | 4 cut(s) | 622, 7363, 12337, 12454 |
| NgoMIV | GCCGGC | 1 cut(s) | 3264 |
| NmeAIII | GCCGAG | 2 cut(s) | 3205, 4981 |
| NsbI | TGCGCA | 1 cut(s) | 7577 |
| NsiI | ATGCAT | 5 cut(s) | 1916, 2099, 2167, 4098, 10813 |
| NspV | TTCGAA | 1 cut(s) | 1249 |
| OliI | CACNNNNGTG | 1 cut(s) | 1559 |
| PaeI | GCATGC | 1 cut(s) | 1765 |
| PagI | TCATGA | 3 cut(s) | 1974, 3775, 12421 |
| PaqCI | CACCTGC | 2 cut(s) | 7262, 7508 |
| PceI | AGGCCT | 2 cut(s) | 7234, 7768 |
| PciI | ACATGT | 3 cut(s) | 4648, 4821, 7338 |
| PciSI | GCTCTTC | 5 cut(s) | 57, 213, 558, 6131, 9365 |
| PctI | GAATGC | 5 cut(s) | 1107, 3541, 10813, 11016, 11448 |
| PdiI | GCCGGC | 1 cut(s) | 3266 |
| PdmI | GAANNNNTTC | 4 cut(s) | 552, 724, 2871, 12051 |
| PflFI | GACNNNGTC | 1 cut(s) | 7158 |
| PflMI | CCANNNNNTGG | 4 cut(s) | 4287, 6667, 7484, 10407 |
| PfoI | TCCNGGA | 3 cut(s) | 4060, 5917, 10567 |
| PmaCI | CACGTG | 1 cut(s) | 12059 |
| PmlI | CACGTG | 1 cut(s) | 12059 |
| Ppu21I | YACGTR | 4 cut(s) | 2285, 5327, 7042, 12059 |
| PpuMI | RGGWCCY | 1 cut(s) | 5915 |
| PscI | ACATGT | 3 cut(s) | 4648, 4821, 7338 |
| PshAI | GACNNNNGTC | 2 cut(s) | 1319, 2589 |
| PshBI | ATTAAT | 6 cut(s) | 806, 2261, 3666, 6081, 9468, 12021 |
| PsiI | TTATAA | 2 cut(s) | 6942, 7229 |
| Psp124BI | GAGCTC | 3 cut(s) | 48, 10493, 12346 |
| Psp1406I | AACGTT | 1 cut(s) | 3710 |
| Psp5II | RGGWCCY | 1 cut(s) | 5915 |
| PspCI | CACGTG | 1 cut(s) | 12059 |
| PspEI | GGTNACC | 1 cut(s) | 7391 |
| PspFI | CCCAGC | 3 cut(s) | 3554, 5077, 10295 |
| PspOMI | GGGCCC | 1 cut(s) | 1293 |
| PspPPI | RGGWCCY | 1 cut(s) | 5915 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 5790, 5822 |
| PstI | CTGCAG | 6 cut(s) | 687, 1656, 2634, 4726, 5785, 9601 |
| PstNI | CAGNNNCTG | 7 cut(s) | 691, 977, 1604, 2110, 2942, 6289, 10582 |
| PsyI | GACNNNGTC | 1 cut(s) | 7158 |
| PvuII | CAGCTG | 7 cut(s) | 1601, 1657, 3554, 4721, 5107, 5626, 6482 |
| RseI | CAYNNNNRTG | 9 cut(s) | 1399, 1559, 2170, 2346, 6327, 6726, 6998, 9498, 11967 |
| Rsr2I | CGGWCCG | 1 cut(s) | 10949 |
| RsrII | CGGWCCG | 1 cut(s) | 10949 |
| SacI | GAGCTC | 3 cut(s) | 48, 10493, 12346 |
| SapI | GCTCTTC | 5 cut(s) | 57, 213, 558, 6131, 9365 |
| ScaI | AGTACT | 1 cut(s) | 3223 |
| SexAI | ACCWGGT | 3 cut(s) | 6226, 10345, 11898 |
| SfuI | TTCGAA | 1 cut(s) | 1249 |
| SmaI | CCCGGG | 2 cut(s) | 4340, 7289 |
| SmiMI | CAYNNNNRTG | 9 cut(s) | 1399, 1559, 2170, 2346, 6327, 6726, 6998, 9498, 11967 |
| SpeI | ACTAGT | 3 cut(s) | 1204, 3722, 6293 |
| SphI | GCATGC | 1 cut(s) | 1765 |
| SrfI | GCCCGGGC | 1 cut(s) | 4340 |
| SseBI | AGGCCT | 2 cut(s) | 7234, 7768 |
| SspI | AATATT | 4 cut(s) | 4992, 6404, 10420, 10522 |
| SstI | GAGCTC | 3 cut(s) | 48, 10493, 12346 |
| StuI | AGGCCT | 2 cut(s) | 7234, 7768 |
| TauI | GCSGC | 8 cut(s) | 698, 1903, 1967, 5174, 6879, 8876, 11238, 11670 |
| TspGWI | ACGGA | 6 cut(s) | 1369, 4964, 5522, 11219, 11651, 11963 |
| TspMI | CCCGGG | 2 cut(s) | 4338, 7287 |
| Tth111I | GACNNNGTC | 1 cut(s) | 7158 |
| Van91I | CCANNNNNTGG | 4 cut(s) | 4287, 6667, 7484, 10407 |
| VneI | GTGCAC | 2 cut(s) | 1722, 5322 |
| VspI | ATTAAT | 6 cut(s) | 806, 2261, 3666, 6081, 9468, 12021 |
| XagI | CCTNNNNNAGG | 7 cut(s) | 393, 7098, 7515, 8779, 9307, 9833, 9886 |
| XbaI | TCTAGA | 3 cut(s) | 5372, 8752, 9280 |
| XcmI | CCANNNNNNNNNTGG | 4 cut(s) | 4210, 5303, 6920, 9482 |
| XmaI | CCCGGG | 2 cut(s) | 4338, 7287 |
| XmaJI | CCTAGG | 1 cut(s) | 3536 |
| XmiI | GTMKAC | 6 cut(s) | 5932, 7129, 11196, 11628, 11973, 12401 |
| XmnI | GAANNNNTTC | 4 cut(s) | 552, 724, 2871, 12051 |
| ZraI | GACGTC | 1 cut(s) | 7157 |
| ZrmI | AGTACT | 1 cut(s) | 3223 |
| Zsp2I | ATGCAT | 5 cut(s) | 1916, 2099, 2167, 4098, 10813 |