E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G55860 AT1G70320 |
| fragaria_vesca | FvH4_3g42950 FvH4_3g42950 FvH4_3g42950 FvH4_3g42950 |
| malus_domestica | MD03G1027100.v1.1 MD11G1031000.v1.1 |
| prunus_persica | Prupe.6G024400_v2.0.a1 Prupe.6G024400_v2.0.a1 |
| pyrus_communis | pycom03g02210 pycom11g02630 |
| rosa_chinensis | RchiOBHm_Chr5g0077001 |
| rosa_laevigata | RLG00000036641 |
| rosa_multiflora | Rmu_sc0003323.1_g000004 |
| rosa_roxburghii | Rroxscaffold_1G00005140 |
| rosa_rugosa | Rorug05G0450000 Rorug05G0450000 Rorug05G0450100 |
| rosa_samantha | Rh5AG504800 Rh5BG526500 Rh5CG550300 Rh5DG538700 |
| rosa_wichuraiana | Rw5G047160 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 9297 |
| AarI | CACCTGC | 1 cut(s) | 6962 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 6871 |
| Acc16I | TGCGCA | 1 cut(s) | 10265 |
| Acc36I | ACCTGC | 5 cut(s) | 202, 6730, 6962, 7208, 9064 |
| Acc65I | GGTACC | 2 cut(s) | 3389, 7522 |
| AccB1I | GGYRCC | 5 cut(s) | 3389, 5059, 7522, 7813, 10123 |
| AccB7I | CCANNNNNTGG | 4 cut(s) | 3990, 5258, 6316, 7184 |
| AccBSI | CCGCTC | 1 cut(s) | 5665 |
| AccI | GTMKAC | 7 cut(s) | 2929, 3590, 5632, 6829, 9767, 10452, 10979 |
| AccII | CGCG | 2 cut(s) | 2880, 8259 |
| AccIII | TCCGGA | 1 cut(s) | 3848 |
| AclI | AACGTT | 1 cut(s) | 4557 |
| AcoI | YGGCCR | 5 cut(s) | 544, 2380, 3981, 5490, 7204 |
| AcyI | GRCGYC | 1 cut(s) | 4169 |
| AflIII | ACRYGT | 4 cut(s) | 2067, 4351, 7038, 9568 |
| AhdI | GACNNNNNGTC | 3 cut(s) | 2967, 3166, 5710 |
| AhlI | ACTAGT | 2 cut(s) | 1489, 3425 |
| AjiI | CACGTC | 4 cut(s) | 1026, 2261, 3823, 8998 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 492, 524, 10429, 10461 |
| AleI | CACNNNNGTG | 5 cut(s) | 1259, 3365, 5312, 9987, 10351 |
| Alw44I | GTGCAC | 1 cut(s) | 8626 |
| AlwNI | CAGNNNCTG | 8 cut(s) | 1304, 2648, 5989, 6242, 7508, 8288, 8483, 9323 |
| Ama87I | CYCGRG | 7 cut(s) | 2439, 3557, 4007, 4041, 6987, 7619, 10879 |
| Aor13HI | TCCGGA | 1 cut(s) | 3848 |
| ApaLI | GTGCAC | 1 cut(s) | 8626 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 943, 975 |
| AseI | ATTAAT | 6 cut(s) | 515, 701, 1967, 5781, 8721, 10845 |
| Asp700I | GAANNNNTTC | 6 cut(s) | 261, 433, 2577, 3374, 8289, 11241 |
| Asp718I | GGTACC | 2 cut(s) | 3389, 7522 |
| AspA2I | CCTAGG | 1 cut(s) | 9602 |
| AspLEI | GCGC | 5 cut(s) | 1974, 3613, 3949, 5769, 10266 |
| AsuC2I | CCSGG | 7 cut(s) | 1938, 4778, 5935, 6988, 6989, 10229, 10749 |
| AsuII | TTCGAA | 2 cut(s) | 949, 7776 |
| AsuNHI | GCTAGC | 1 cut(s) | 4741 |
| AvaI | CYCGRG | 7 cut(s) | 2439, 3557, 4007, 4041, 6987, 7619, 10879 |
| AvrII | CCTAGG | 1 cut(s) | 9602 |
| AxyI | CCTNAGG | 1 cut(s) | 8685 |
| BaeGI | GKGCMC | 3 cut(s) | 1921, 4048, 8630 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 6588, 6621 |
| BalI | TGGCCA | 5 cut(s) | 546, 2382, 3983, 5492, 7206 |
| BamHI | GGATCC | 3 cut(s) | 4012, 7724, 10606 |
| BanI | GGYRCC | 5 cut(s) | 3389, 5059, 7522, 7813, 10123 |
| BanII | GRGCYC | 3 cut(s) | 9749, 10743, 11170 |
| BauI | CACGAG | 1 cut(s) | 10347 |
| BbsI | GAAGAC | 9 cut(s) | 953, 2255, 4263, 6615, 6669, 6867, 8780, 10928, 11055 |
| BbvCI | CCTCAGC | 4 cut(s) | 1119, 2763, 8196, 9109 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 4145, 4179 |
| BciVI | GTATCC | 2 cut(s) | 4318, 6008 |
| BclI | TGATCA | 8 cut(s) | 3475, 4785, 6163, 6430, 6730, 7066, 8676, 9229 |
| BcnI | CCSGG | 7 cut(s) | 1938, 4778, 5935, 6988, 6989, 10229, 10749 |
| BcuI | ACTAGT | 2 cut(s) | 1489, 3425 |
| BfmI | CTRYAG | 9 cut(s) | 322, 392, 2336, 4647, 4932, 5106, 5481, 7137, 10410 |
| BfuAI | ACCTGC | 5 cut(s) | 202, 6730, 6962, 7208, 9064 |
| BfuI | GTATCC | 2 cut(s) | 4318, 6008 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 9694 |
| BglII | AGATCT | 5 cut(s) | 679, 2019, 2662, 5477, 6155 |
| BlnI | CCTAGG | 1 cut(s) | 9602 |
| BlpI | GCTNAGC | 1 cut(s) | 8061 |
| BmcAI | AGTACT | 1 cut(s) | 3895 |
| BmeRI | GACNNNNNGTC | 3 cut(s) | 2967, 3166, 5710 |
| BmeT110I | CYCGRG | 7 cut(s) | 2439, 3557, 4007, 4041, 6987, 7619, 10879 |
| BmgBI | CACGTC | 4 cut(s) | 1026, 2261, 3823, 8998 |
| BmrI | ACTGGG | 1 cut(s) | 2642 |
| BmtI | GCTAGC | 1 cut(s) | 4745 |
| BmuI | ACTGGG | 1 cut(s) | 2642 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1019 |
| BpiI | GAAGAC | 9 cut(s) | 953, 2255, 4263, 6615, 6669, 6867, 8780, 10928, 11055 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1411, 1443, 11213, 11245 |
| Bpu10I | CCTNAGC | 5 cut(s) | 1119, 2763, 3950, 8196, 9109 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 8061 |
| Bpu14I | TTCGAA | 2 cut(s) | 949, 7776 |
| BpuMI | CCSGG | 7 cut(s) | 1938, 4778, 5935, 6988, 6989, 10229, 10749 |
| Bsa29I | ATCGAT | 1 cut(s) | 10137 |
| BsaAI | YACGTR | 3 cut(s) | 1797, 7072, 9569 |
| BsaBI | GATNNNNATC | 5 cut(s) | 138, 2018, 6300, 7422, 8968 |
| BsaHI | GRCGYC | 1 cut(s) | 4169 |
| BsaI | GGTCTC | 2 cut(s) | 4584, 6961 |
| BsaWI | WCCGGW | 3 cut(s) | 1714, 3848, 10164 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 7244, 7274 |
| Bse118I | RCCGGY | 3 cut(s) | 8427, 9036, 10053 |
| Bse21I | CCTNAGG | 1 cut(s) | 8685 |
| Bse8I | GATNNNNATC | 5 cut(s) | 138, 2018, 6300, 7422, 8968 |
| BseAI | TCCGGA | 1 cut(s) | 3848 |
| BseCI | ATCGAT | 1 cut(s) | 10137 |
| BseJI | GATNNNNATC | 5 cut(s) | 138, 2018, 6300, 7422, 8968 |
| BseRI | GAGGAG | 6 cut(s) | 28, 31, 1435, 1604, 9662, 9804 |
| BseSI | GKGCMC | 3 cut(s) | 1921, 4048, 8630 |
| BseYI | CCCAGC | 3 cut(s) | 8580, 9539, 9551 |
| BsgI | GTGCAG | 9 cut(s) | 289, 435, 2241, 2658, 4040, 4386, 7128, 7352, 9314 |
| Bsh1236I | CGCG | 2 cut(s) | 2880, 8259 |
| BshNI | GGYRCC | 5 cut(s) | 3389, 5059, 7522, 7813, 10123 |
| BshVI | ATCGAT | 1 cut(s) | 10137 |
| BsiHKCI | CYCGRG | 7 cut(s) | 2439, 3557, 4007, 4041, 6987, 7619, 10879 |
| BsmBI | CGTCTC | 3 cut(s) | 3813, 6113, 9816 |
| BsmI | GAATGC | 4 cut(s) | 807, 3244, 4205, 10069 |
| Bso31I | GGTCTC | 2 cut(s) | 4584, 6961 |
| BsoBI | CYCGRG | 7 cut(s) | 2439, 3557, 4007, 4041, 6987, 7619, 10879 |
| Bsp119I | TTCGAA | 2 cut(s) | 949, 7776 |
| Bsp13I | TCCGGA | 1 cut(s) | 3848 |
| Bsp1407I | TGTACA | 4 cut(s) | 5542, 6244, 7687, 9790 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 8061 |
| Bsp19I | CCATGG | 4 cut(s) | 3385, 3518, 3984, 4200 |
| BspDI | ATCGAT | 1 cut(s) | 10137 |
| BspEI | TCCGGA | 1 cut(s) | 3848 |
| BspFNI | CGCG | 2 cut(s) | 2880, 8259 |
| BspHI | TCATGA | 5 cut(s) | 1677, 3478, 6679, 11245, 11269 |
| BspMAI | CTGCAG | 4 cut(s) | 396, 2340, 5110, 5485 |
| BspMI | ACCTGC | 5 cut(s) | 202, 6730, 6962, 7208, 9064 |
| BspOI | GCTAGC | 1 cut(s) | 4745 |
| BspQI | GCTCTTC | 1 cut(s) | 2095 |
| BspT104I | TTCGAA | 2 cut(s) | 949, 7776 |
| BspT107I | GGYRCC | 5 cut(s) | 3389, 5059, 7522, 7813, 10123 |
| BspTNI | GGTCTC | 2 cut(s) | 4584, 6961 |
| BsrBI | CCGCTC | 1 cut(s) | 5665 |
| BsrFI | RCCGGY | 3 cut(s) | 8427, 9036, 10053 |
| BsrGI | TGTACA | 4 cut(s) | 5542, 6244, 7687, 9790 |
| BssAI | RCCGGY | 3 cut(s) | 8427, 9036, 10053 |
| BssNAI | GTATAC | 2 cut(s) | 5633, 10980 |
| BssNI | GRCGYC | 1 cut(s) | 4169 |
| BssSI | CACGAG | 1 cut(s) | 10347 |
| Bst1107I | GTATAC | 2 cut(s) | 5633, 10980 |
| Bst2BI | CACGAG | 1 cut(s) | 10347 |
| Bst6I | CTCTTC | 9 cut(s) | 495, 2095, 2118, 2785, 4119, 6393, 7165, 8256, 10314 |
| BstACI | GRCGYC | 1 cut(s) | 4169 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 2645, 3944, 6239, 8483 |
| BstAUI | TGTACA | 4 cut(s) | 5542, 6244, 7687, 9790 |
| BstBAI | YACGTR | 3 cut(s) | 1797, 7072, 9569 |
| BstBI | TTCGAA | 2 cut(s) | 949, 7776 |
| BstDSI | CCRYGG | 5 cut(s) | 3385, 3518, 3984, 4200, 7710 |
| BstEII | GGTNACC | 2 cut(s) | 5497, 7091 |
| BstENI | CCTNNNNNAGG | 6 cut(s) | 102, 6798, 7215, 7788, 8560, 9089 |
| BstFNI | CGCG | 2 cut(s) | 2880, 8259 |
| BstHHI | GCGC | 5 cut(s) | 1974, 3613, 3949, 5769, 10266 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1019 |
| BstPI | GGTNACC | 2 cut(s) | 5497, 7091 |
| BstSFI | CTRYAG | 9 cut(s) | 322, 392, 2336, 4647, 4932, 5106, 5481, 7137, 10410 |
| BstSLI | GKGCMC | 3 cut(s) | 1921, 4048, 8630 |
| BstUI | CGCG | 2 cut(s) | 2880, 8259 |
| BstV2I | GAAGAC | 9 cut(s) | 953, 2255, 4263, 6615, 6669, 6867, 8780, 10928, 11055 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 8588, 9989 |
| BstZ17I | GTATAC | 2 cut(s) | 5633, 10980 |
| Bsu15I | ATCGAT | 1 cut(s) | 10137 |
| Bsu36I | CCTNAGG | 1 cut(s) | 8685 |
| BsuI | GTATCC | 2 cut(s) | 4318, 6008 |
| BsuTUI | ATCGAT | 1 cut(s) | 10137 |
| BtgI | CCRYGG | 5 cut(s) | 3385, 3518, 3984, 4200, 7710 |
| BtgZI | GCGATG | 1 cut(s) | 10034 |
| BtrI | CACGTC | 4 cut(s) | 1026, 2261, 3823, 8998 |
| BtsI | GCAGTG | 7 cut(s) | 66, 2451, 3844, 6226, 7254, 9057, 9902 |
| BveI | ACCTGC | 5 cut(s) | 202, 6730, 6962, 7208, 9064 |
| CaiI | CAGNNNCTG | 8 cut(s) | 1304, 2648, 5989, 6242, 7508, 8288, 8483, 9323 |
| CciI | TCATGA | 5 cut(s) | 1677, 3478, 6679, 11245, 11269 |
| CfoI | GCGC | 5 cut(s) | 1974, 3613, 3949, 5769, 10266 |
| Cfr10I | RCCGGY | 3 cut(s) | 8427, 9036, 10053 |
| Cfr9I | CCCGGG | 1 cut(s) | 6987 |
| ClaI | ATCGAT | 1 cut(s) | 10137 |
| CseI | GACGC | 5 cut(s) | 2772, 4085, 4158, 4593, 8795 |
| CsiI | ACCWGGT | 3 cut(s) | 5926, 7177, 10722 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 4663, 4698 |
| DraI | TTTAAA | 7 cut(s) | 414, 1627, 2985, 3042, 6109, 7362, 10480 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 6871 |
| DriI | GACNNNNNGTC | 3 cut(s) | 2967, 3166, 5710 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 6871 |
| EaeI | YGGCCR | 5 cut(s) | 544, 2380, 3981, 5490, 7204 |
| Eam1104I | CTCTTC | 9 cut(s) | 495, 2095, 2118, 2785, 4119, 6393, 7165, 8256, 10314 |
| Eam1105I | GACNNNNNGTC | 3 cut(s) | 2967, 3166, 5710 |
| EarI | CTCTTC | 9 cut(s) | 495, 2095, 2118, 2785, 4119, 6393, 7165, 8256, 10314 |
| Ecl136II | GAGCTC | 3 cut(s) | 9747, 10741, 11168 |
| Eco147I | AGGCCT | 1 cut(s) | 1734 |
| Eco24I | GRGCYC | 3 cut(s) | 9749, 10743, 11170 |
| Eco31I | GGTCTC | 2 cut(s) | 4584, 6961 |
| Eco32I | GATATC | 6 cut(s) | 2700, 3293, 4159, 4435, 7297, 8143 |
| Eco53kI | GAGCTC | 3 cut(s) | 9747, 10741, 11168 |
| Eco81I | CCTNAGG | 1 cut(s) | 8685 |
| Eco88I | CYCGRG | 7 cut(s) | 2439, 3557, 4007, 4041, 6987, 7619, 10879 |
| Eco91I | GGTNACC | 2 cut(s) | 5497, 7091 |
| EcoICRI | GAGCTC | 3 cut(s) | 9747, 10741, 11168 |
| EcoNI | CCTNNNNNAGG | 6 cut(s) | 102, 6798, 7215, 7788, 8560, 9089 |
| EcoO109I | RGGNCCY | 5 cut(s) | 95, 3673, 7220, 9206, 9397 |
| EcoO65I | GGTNACC | 2 cut(s) | 5497, 7091 |
| EcoRI | GAATTC | 4 cut(s) | 951, 8811, 9157, 9616 |
| EcoRV | GATATC | 6 cut(s) | 2700, 3293, 4159, 4435, 7297, 8143 |
| EcoT22I | ATGCAT | 5 cut(s) | 595, 805, 809, 1619, 3801 |
| EcoT38I | GRGCYC | 3 cut(s) | 9749, 10743, 11170 |
| Esp3I | CGTCTC | 3 cut(s) | 3813, 6113, 9816 |
| FauI | CCCGC | 3 cut(s) | 797, 3948, 5586 |
| FauNDI | CATATG | 3 cut(s) | 7063, 8916, 11161 |
| FbaI | TGATCA | 8 cut(s) | 3475, 4785, 6163, 6430, 6730, 7066, 8676, 9229 |
| FblI | GTMKAC | 7 cut(s) | 2929, 3590, 5632, 6829, 9767, 10452, 10979 |
| FriOI | GRGCYC | 3 cut(s) | 9749, 10743, 11170 |
| FspI | TGCGCA | 1 cut(s) | 10265 |
| GlaI | GCGC | 5 cut(s) | 1973, 3612, 3948, 5768, 10265 |
| GsaI | CCCAGC | 3 cut(s) | 8584, 9543, 9555 |
| HgaI | GACGC | 5 cut(s) | 2772, 4085, 4158, 4593, 8795 |
| HhaI | GCGC | 5 cut(s) | 1974, 3613, 3949, 5769, 10266 |
| Hin1I | GRCGYC | 1 cut(s) | 4169 |
| Hin6I | GCGC | 5 cut(s) | 1972, 3611, 3947, 5767, 10264 |
| HinP1I | GCGC | 5 cut(s) | 1972, 3611, 3947, 5767, 10264 |
| HincII | GTYRAC | 9 cut(s) | 2073, 2930, 3160, 3591, 4099, 4153, 6808, 8212, 10798 |
| HindII | GTYRAC | 9 cut(s) | 2073, 2930, 3160, 3591, 4099, 4153, 6808, 8212, 10798 |
| HindIII | AAGCTT | 5 cut(s) | 1275, 1521, 5721, 5796, 9183 |
| HpaI | GTTAAC | 1 cut(s) | 6808 |
| Hpy99I | CGWCG | 5 cut(s) | 1030, 1509, 2925, 4174, 8811 |
| Hsp92I | GRCGYC | 1 cut(s) | 4169 |
| HspAI | GCGC | 5 cut(s) | 1972, 3611, 3947, 5767, 10264 |
| KflI | GGGWCCC | 1 cut(s) | 3673 |
| Kpn2I | TCCGGA | 1 cut(s) | 3848 |
| KpnI | GGTACC | 2 cut(s) | 3393, 7526 |
| KroI | GCCGGC | 1 cut(s) | 10053 |
| KroNI | GCCGGC | 1 cut(s) | 10055 |
| Ksp22I | TGATCA | 8 cut(s) | 3475, 4785, 6163, 6430, 6730, 7066, 8676, 9229 |
| KspAI | GTTAAC | 1 cut(s) | 6808 |
| LguI | GCTCTTC | 1 cut(s) | 2095 |
| MabI | ACCWGGT | 3 cut(s) | 5926, 7177, 10722 |
| MbiI | CCGCTC | 1 cut(s) | 5665 |
| MfeI | CAATTG | 3 cut(s) | 3648, 7992, 8463 |
| MlsI | TGGCCA | 5 cut(s) | 546, 2382, 3983, 5492, 7206 |
| MluNI | TGGCCA | 5 cut(s) | 546, 2382, 3983, 5492, 7206 |
| Mox20I | TGGCCA | 5 cut(s) | 546, 2382, 3983, 5492, 7206 |
| Mph1103I | ATGCAT | 5 cut(s) | 595, 805, 809, 1619, 3801 |
| MroI | TCCGGA | 1 cut(s) | 3848 |
| MroNI | GCCGGC | 1 cut(s) | 10053 |
| MroXI | GAANNNNTTC | 6 cut(s) | 261, 433, 2577, 3374, 8289, 11241 |
| MscI | TGGCCA | 5 cut(s) | 546, 2382, 3983, 5492, 7206 |
| Msp20I | TGGCCA | 5 cut(s) | 546, 2382, 3983, 5492, 7206 |
| MspA1I | CMGCKG | 7 cut(s) | 1301, 3257, 3491, 5198, 7232, 9425, 9488 |
| MunI | CAATTG | 3 cut(s) | 3648, 7992, 8463 |
| Mva1269I | GAATGC | 4 cut(s) | 807, 3244, 4205, 10069 |
| MvnI | CGCG | 2 cut(s) | 2880, 8259 |
| NaeI | GCCGGC | 1 cut(s) | 10055 |
| NciI | CCSGG | 7 cut(s) | 1938, 4778, 5935, 6988, 6989, 10229, 10749 |
| NcoI | CCATGG | 4 cut(s) | 3385, 3518, 3984, 4200 |
| NdeI | CATATG | 3 cut(s) | 7063, 8916, 11161 |
| NgoMIV | GCCGGC | 1 cut(s) | 10053 |
| NheI | GCTAGC | 1 cut(s) | 4741 |
| NmeAIII | GCCGAG | 1 cut(s) | 733 |
| NsbI | TGCGCA | 1 cut(s) | 10265 |
| NsiI | ATGCAT | 5 cut(s) | 595, 805, 809, 1619, 3801 |
| NspV | TTCGAA | 2 cut(s) | 949, 7776 |
| OliI | CACNNNNGTG | 5 cut(s) | 1259, 3365, 5312, 9987, 10351 |
| PaeI | GCATGC | 3 cut(s) | 807, 4604, 10270 |
| PaeR7I | CTCGAG | 1 cut(s) | 3557 |
| PagI | TCATGA | 5 cut(s) | 1677, 3478, 6679, 11245, 11269 |
| PaqCI | CACCTGC | 1 cut(s) | 6962 |
| PasI | CCCWGGG | 1 cut(s) | 1559 |
| PceI | AGGCCT | 1 cut(s) | 1734 |
| PciI | ACATGT | 3 cut(s) | 2067, 4351, 7038 |
| PciSI | GCTCTTC | 1 cut(s) | 2095 |
| PctI | GAATGC | 4 cut(s) | 807, 3244, 4205, 10069 |
| PdiI | GCCGGC | 1 cut(s) | 10055 |
| PdmI | GAANNNNTTC | 6 cut(s) | 261, 433, 2577, 3374, 8289, 11241 |
| PflFI | GACNNNGTC | 1 cut(s) | 4576 |
| PflMI | CCANNNNNTGG | 4 cut(s) | 3990, 5258, 6316, 7184 |
| PfoI | TCCNGGA | 5 cut(s) | 197, 5617, 8007, 9823, 10854 |
| Ppu21I | YACGTR | 3 cut(s) | 1797, 7072, 9569 |
| PpuMI | RGGWCCY | 5 cut(s) | 95, 3673, 7220, 9206, 9397 |
| PscI | ACATGT | 3 cut(s) | 2067, 4351, 7038 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1019 |
| PshBI | ATTAAT | 6 cut(s) | 515, 701, 1967, 5781, 8721, 10845 |
| PsiI | TTATAA | 1 cut(s) | 9297 |
| Psp124BI | GAGCTC | 3 cut(s) | 9749, 10743, 11170 |
| Psp1406I | AACGTT | 1 cut(s) | 4557 |
| Psp5II | RGGWCCY | 5 cut(s) | 95, 3673, 7220, 9206, 9397 |
| PspEI | GGTNACC | 2 cut(s) | 5497, 7091 |
| PspFI | CCCAGC | 3 cut(s) | 8580, 9539, 9551 |
| PspPPI | RGGWCCY | 5 cut(s) | 95, 3673, 7220, 9206, 9397 |
| PspXI | VCTCGAGB | 1 cut(s) | 3557 |
| PstI | CTGCAG | 4 cut(s) | 396, 2340, 5110, 5485 |
| PstNI | CAGNNNCTG | 8 cut(s) | 1304, 2648, 5989, 6242, 7508, 8288, 8483, 9323 |
| PsyI | GACNNNGTC | 1 cut(s) | 4576 |
| PvuII | CAGCTG | 7 cut(s) | 1301, 3257, 3491, 5198, 7232, 9425, 9488 |
| SacI | GAGCTC | 3 cut(s) | 9749, 10743, 11170 |
| SalI | GTCGAC | 2 cut(s) | 2928, 3589 |
| SapI | GCTCTTC | 1 cut(s) | 2095 |
| ScaI | AGTACT | 1 cut(s) | 3895 |
| SexAI | ACCWGGT | 3 cut(s) | 5926, 7177, 10722 |
| SfcI | CTRYAG | 9 cut(s) | 322, 392, 2336, 4647, 4932, 5106, 5481, 7137, 10410 |
| Sfr274I | CTCGAG | 1 cut(s) | 3557 |
| SfuI | TTCGAA | 2 cut(s) | 949, 7776 |
| SlaI | CTCGAG | 1 cut(s) | 3557 |
| SmaI | CCCGGG | 1 cut(s) | 6989 |
| SpeI | ACTAGT | 2 cut(s) | 1489, 3425 |
| SphI | GCATGC | 3 cut(s) | 807, 4604, 10270 |
| SseBI | AGGCCT | 1 cut(s) | 1734 |
| SspI | AATATT | 7 cut(s) | 1623, 2815, 4692, 6104, 9301, 9778, 10762 |
| SstI | GAGCTC | 3 cut(s) | 9749, 10743, 11170 |
| StuI | AGGCCT | 1 cut(s) | 1734 |
| TaqII | GACCGA | 3 cut(s) | 981, 4275, 6266 |
| TauI | GCSGC | 6 cut(s) | 3346, 4169, 6179, 6858, 8530, 10273 |
| TspGWI | ACGGA | 6 cut(s) | 266, 5248, 6440, 10475, 10823, 11085 |
| TspMI | CCCGGG | 1 cut(s) | 6987 |
| Tth111I | GACNNNGTC | 1 cut(s) | 4576 |
| Van91I | CCANNNNNTGG | 4 cut(s) | 3990, 5258, 6316, 7184 |
| VneI | GTGCAC | 1 cut(s) | 8626 |
| VspI | ATTAAT | 6 cut(s) | 515, 701, 1967, 5781, 8721, 10845 |
| XagI | CCTNNNNNAGG | 6 cut(s) | 102, 6798, 7215, 7788, 8560, 9089 |
| XbaI | TCTAGA | 2 cut(s) | 229, 1813 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 3913, 5003, 6620 |
| XhoI | CTCGAG | 1 cut(s) | 3557 |
| XmaI | CCCGGG | 1 cut(s) | 6987 |
| XmaJI | CCTAGG | 1 cut(s) | 9602 |
| XmiI | GTMKAC | 7 cut(s) | 2929, 3590, 5632, 6829, 9767, 10452, 10979 |
| XmnI | GAANNNNTTC | 6 cut(s) | 261, 433, 2577, 3374, 8289, 11241 |
| ZrmI | AGTACT | 1 cut(s) | 3895 |
| Zsp2I | ATGCAT | 5 cut(s) | 595, 805, 809, 1619, 3801 |