FvH4_3g43731

Component of the DNA topoisomerase VI involved in chromatin organization and progression of endoreduplication cycles. Relaxes both positive and negative superturns and exhibits a strong decatenase activity

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
36416769 .. 36417955
1187 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g43731.t1

Sequence Viewer

Length: 1098 bp
ATGGCTTCACAATCAAGATGGACGAAACCGGTACCAGAAAAAGAAGTGCTCCGCCGATTAATTGCCGAACACAGAAAACTGTGCACAAGTCAGAAGGCTAATTCTGCGACCTCTTCTAGACATGAAGATGTTGATTATCACGAGGCCAAAGACCTCTCTATCACGGAAATAAAGGAGGAACTAGAAGAGCTCAAGCAGAAATTAGATGATCCGGACTTTAGTTTGGTTACACGAGGCGATCGTAACGTGACCTATCGTGCTTGCAGTGATGGGGTCCGACGTCTTACAGTGAAAAATATAAATACACGCTCTAAACCAAAAGATGTTAAAAGAAACGATGTGAGTGATGTGATTGATTATATTCTCAAATCCATCGAAGAAAACATGAGGGAAACACATCAAGGGGGGTATTACCAAAAAAGAAATGGCGATAAAAAGTTCAAGAAAGAACAAATGTACGACATTATTGATGATATATGTTGCACTATAGGGTGCACAATTCCAAGTTTCCCCGTAGATGCTGCTGAAAAAGCTTTTGTTGGAGGTCGGCTTTCGTGGATGCAGAATGGTTACCCAACCTATTGTCAAAGCCGAGATGATGGGGTGGCCGTCCCTAATTTGCGTTCAAAGATGATTTGGAGAATCATGAAGCCAAGCATGGGAATGCCCGGGGTGGGGGGCAGAAGATTTATAAAGCTGTTGTGGGAGACTTTCAGGCTTCCCACGTATGGCCTTTTCGATTGTGATCCATCAGGTATCATAATATTCAACACTTATACTGTTGGGTCGATTGAAAAGGCCTACGACAATGTAAGTTTAACTTGTCCGTCGATGACATGGTTAGGTGTTTGGCCGAGTGACCTAAGAGACCTTGAGATAGCCGGGGAGGATTTGAGTGAAAAGAATATTCAAGAAGTAGACAATCTTTTGAAGAAAGAATTTGTTAAAGATAATCCGAGGTTGAAAGAAGAGCTGAAAGAAATGAAAAGGACAGGGAAAAAAGCCAACCTGGAAGCTTTGAAGGAGAAATTTGGACCCGCTTGGTTGTCAAAGGGCTTTTTGCCGTATAAGTTGCATCGTCTTTTGACCGTGAAGTGA

Protein Analysis

366

Amino Acids

41.99

Weight (kDa)

8.89

Isoelectric Point (pI)

51.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TOP6A-Spo11_Toprim PF21180 219 - 358 1.3e-34 Topoisomerase 6 subunit A/Spo11, Toprim domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 692
AatII GACGTC 1 cut(s) 283
Acc65I GGTACC 1 cut(s) 31
AccB1I GGYRCC 1 cut(s) 31
AccI GTMKAC 1 cut(s) 918
AccIII TCCGGA 1 cut(s) 211
AciI CCGC 2 cut(s) 52, 1038
AclWI GGATC 2 cut(s) 203, 740
AcoI YGGCCR 2 cut(s) 606, 851
AcsI RAATTY 2 cut(s) 938, 1028
AcyI GRCGYC 1 cut(s) 280
AfaI GTAC 2 cut(s) 33, 458
AfiI CCNNNNNNNGG 4 cut(s) 659, 674, 675, 728
AgeI ACCGGT 1 cut(s) 28
AgsI TTSAA 8 cut(s) 442, 627, 769, 794, 911, 931, 964, 1021
AjnI CCWGG 1 cut(s) 1008
AluBI AGCT 5 cut(s) 190, 533, 697, 973, 1016
AluI AGCT 5 cut(s) 190, 533, 697, 973, 1016
Alw21I GWGCWC 4 cut(s) 51, 86, 192, 497
Alw26I GTCTC 2 cut(s) 701, 861
Alw44I GTGCAC 2 cut(s) 82, 493
AlwI GGATC 2 cut(s) 203, 740
Ama87I CYCGRG 1 cut(s) 668
Aor13HI TCCGGA 1 cut(s) 211
AoxI GGCC 5 cut(s) 144, 606, 730, 798, 851
ApaLI GTGCAC 2 cut(s) 82, 493
ApeKI GCWGC 1 cut(s) 521
ApoI RAATTY 2 cut(s) 938, 1028
AseI ATTAAT 1 cut(s) 59
AsiGI ACCGGT 1 cut(s) 28
Asp718I GGTACC 1 cut(s) 31
AspS9I GGNCC 2 cut(s) 274, 1034
AsuC2I CCSGG 3 cut(s) 669, 670, 883
AvaI CYCGRG 1 cut(s) 668
AvaII GGWCC 2 cut(s) 274, 1034
BaeGI GKGCMC 2 cut(s) 86, 497
BanI GGYRCC 1 cut(s) 31
BanII GRGCYC 1 cut(s) 192
BauI CACGAG 2 cut(s) 140, 231
Bbv12I GWGCWC 4 cut(s) 51, 86, 192, 497
BbvI GCAGC 1 cut(s) 508
BccI CCATC 5 cut(s) 12, 263, 380, 593, 757
BceAI ACGGC 2 cut(s) 593, 1048
BciT130I CCWGG 1 cut(s) 1010
BcnI CCSGG 3 cut(s) 669, 670, 883
BcoDI GTCTC 2 cut(s) 701, 861
BfaI CTAG 2 cut(s) 117, 182
BfmI CTRYAG 1 cut(s) 486
BisI GCNGC 1 cut(s) 522
BlsI GCNGC 1 cut(s) 523
Bme1390I CCNGG 4 cut(s) 669, 670, 883, 1010
Bme18I GGWCC 2 cut(s) 274, 1034
BmeT110I CYCGRG 1 cut(s) 668
BmgT120I GGNCC 2 cut(s) 274, 1034
BmiI GGNNCC 3 cut(s) 33, 275, 1036
BmrFI CCNGG 4 cut(s) 669, 670, 883, 1010
BmsI GCATC 3 cut(s) 508, 549, 1084
BpuEI CTTGAG 2 cut(s) 176, 893
BpuMI CCSGG 3 cut(s) 669, 670, 883
BsaAI YACGTR 1 cut(s) 726
BsaBI GATNNNNATC 1 cut(s) 744
BsaHI GRCGYC 1 cut(s) 280
BsaI GGTCTC 1 cut(s) 861
BsaJI CCNNGG 4 cut(s) 668, 669, 882, 956
BsaWI WCCGGW 2 cut(s) 28, 211
Bsc4I CCNNNNNNNGG 4 cut(s) 659, 674, 675, 728
Bse118I RCCGGY 1 cut(s) 28
Bse8I GATNNNNATC 1 cut(s) 744
BseAI TCCGGA 1 cut(s) 211
BseBI CCWGG 1 cut(s) 1010
BseDI CCNNGG 4 cut(s) 668, 669, 882, 956
BseGI GGATG 1 cut(s) 564
BseJI GATNNNNATC 1 cut(s) 744
BseLI CCNNNNNNNGG 4 cut(s) 659, 674, 675, 728
BseSI GKGCMC 2 cut(s) 86, 497
BseXI GCAGC 1 cut(s) 508
Bsh1285I CGRYCG 1 cut(s) 241
BshFI GGCC 5 cut(s) 146, 608, 732, 800, 853
BshNI GGYRCC 1 cut(s) 31
BshTI ACCGGT 1 cut(s) 28
BsiEI CGRYCG 1 cut(s) 241
BsiHKAI GWGCWC 4 cut(s) 51, 86, 192, 497
BsiHKCI CYCGRG 1 cut(s) 668
BsiSI CCGG 4 cut(s) 29, 212, 669, 882
BslFI GGGAC 1 cut(s) 596
BslI CCNNNNNNNGG 4 cut(s) 659, 674, 675, 728
BsmAI GTCTC 2 cut(s) 701, 861
BsmFI GGGAC 1 cut(s) 596
BsmI GAATGC 1 cut(s) 669
BsnI GGCC 5 cut(s) 146, 608, 732, 800, 853
Bso31I GGTCTC 1 cut(s) 861
BsoBI CYCGRG 1 cut(s) 668
Bsp1286I GDGCHC 4 cut(s) 51, 86, 192, 497
Bsp13I TCCGGA 1 cut(s) 211
Bsp143I GATC 3 cut(s) 208, 238, 745
BspACI CCGC 2 cut(s) 52, 1038
BspANI GGCC 5 cut(s) 146, 608, 732, 800, 853
BspEI TCCGGA 1 cut(s) 211
BspHI TCATGA 1 cut(s) 645
BspLI GGNNCC 3 cut(s) 33, 275, 1036
BspPI GGATC 2 cut(s) 203, 740
BspQI GCTCTTC 2 cut(s) 180, 963
BspT107I GGYRCC 1 cut(s) 31
BspTNI GGTCTC 1 cut(s) 861
BsrFI RCCGGY 1 cut(s) 28
BssAI RCCGGY 1 cut(s) 28
BssECI CCNNGG 4 cut(s) 668, 669, 882, 956
BssMI GATC 3 cut(s) 208, 238, 745
BssNI GRCGYC 1 cut(s) 280
BssSI CACGAG 2 cut(s) 140, 231
Bst2BI CACGAG 2 cut(s) 140, 231
Bst2UI CCWGG 1 cut(s) 1010
Bst4CI ACNGT 4 cut(s) 81, 289, 781, 1090
Bst6I CTCTTC 3 cut(s) 118, 180, 963
BstACI GRCGYC 1 cut(s) 280
BstBAI YACGTR 1 cut(s) 726
BstC8I GCNNGC 1 cut(s) 262
BstDEI CTNAG 1 cut(s) 863
BstEII GGTNACC 1 cut(s) 569
BstF5I GGATG 1 cut(s) 564
BstKTI GATC 3 cut(s) 211, 241, 748
BstMAI GTCTC 2 cut(s) 701, 861
BstMBI GATC 3 cut(s) 208, 238, 745
BstMCI CGRYCG 1 cut(s) 241
BstMWI GCNNNNNNNGC 2 cut(s) 104, 530
BstNI CCWGG 1 cut(s) 1010
BstPI GGTNACC 1 cut(s) 569
BstSCI CCNGG 4 cut(s) 667, 668, 881, 1008
BstSFI CTRYAG 1 cut(s) 486
BstSLI GKGCMC 2 cut(s) 86, 497
BstV1I GCAGC 1 cut(s) 508
BsuRI GGCC 5 cut(s) 146, 608, 732, 800, 853
BtsCI GGATG 1 cut(s) 564
BtsI GCAGTG 1 cut(s) 271
BtsIMutI CAGTG 2 cut(s) 271, 294
Cac8I GCNNGC 1 cut(s) 262
CciI TCATGA 1 cut(s) 645
Cfr10I RCCGGY 1 cut(s) 28
Cfr13I GGNCC 2 cut(s) 274, 1034
Cfr9I CCCGGG 1 cut(s) 668
Csp6I GTAC 2 cut(s) 32, 457
CspAI ACCGGT 1 cut(s) 28
CviAII CATG 5 cut(s) 122, 385, 646, 658, 837
CviQI GTAC 2 cut(s) 32, 457
DdeI CTNAG 1 cut(s) 863
DpnI GATC 3 cut(s) 210, 240, 747
DpnII GATC 3 cut(s) 208, 238, 745
EaeI YGGCCR 2 cut(s) 606, 851
Eam1104I CTCTTC 3 cut(s) 118, 180, 963
EarI CTCTTC 3 cut(s) 118, 180, 963
EciI GGCGGA 1 cut(s) 41
Ecl136II GAGCTC 1 cut(s) 190
Eco147I AGGCCT 1 cut(s) 800
Eco24I GRGCYC 1 cut(s) 192
Eco31I GGTCTC 1 cut(s) 861
Eco47I GGWCC 2 cut(s) 274, 1034
Eco53kI GAGCTC 1 cut(s) 190
Eco88I CYCGRG 1 cut(s) 668
Eco91I GGTNACC 1 cut(s) 569
EcoICRI GAGCTC 1 cut(s) 190
EcoO65I GGTNACC 1 cut(s) 569
EcoRII CCWGG 1 cut(s) 1008
EcoT38I GRGCYC 1 cut(s) 192
FaeI CATG 5 cut(s) 125, 388, 649, 661, 840
FalI AAGNNNNNCTT 2 cut(s) 805, 837
FaqI GGGAC 1 cut(s) 596
FatI CATG 5 cut(s) 121, 384, 645, 657, 836
FauI CCCGC 1 cut(s) 1045
FblI GTMKAC 1 cut(s) 918
Fnu4HI GCNGC 1 cut(s) 522
FokI GGATG 1 cut(s) 571
FriOI GRGCYC 1 cut(s) 192
Fsp4HI GCNGC 1 cut(s) 522
FspBI CTAG 2 cut(s) 117, 182
GluI GCNGC 1 cut(s) 522
HaeIII GGCC 5 cut(s) 146, 608, 732, 800, 853
HapII CCGG 4 cut(s) 29, 212, 669, 882
Hin1I GRCGYC 1 cut(s) 280
Hin1II CATG 5 cut(s) 125, 388, 649, 661, 840
HindIII AAGCTT 2 cut(s) 531, 1014
HinfI GANTC 1 cut(s) 642
HpaII CCGG 4 cut(s) 29, 212, 669, 882
Hpy166II GTNNAC 3 cut(s) 84, 495, 919
Hpy188I TCNGA 3 cut(s) 93, 278, 957
Hpy188III TCNNGA 7 cut(s) 15, 117, 140, 212, 442, 646, 911
Hpy8I GTNNAC 3 cut(s) 84, 495, 919
Hpy99I CGWCG 2 cut(s) 282, 832
HpyAV CCTTC 2 cut(s) 88, 1015
HpyCH4III ACNGT 4 cut(s) 81, 289, 781, 1090
HpyCH4IV ACGT 3 cut(s) 246, 280, 725
HpyCH4V TGCA 6 cut(s) 84, 264, 483, 495, 562, 1075
HpyF10VI GCNNNNNNNGC 2 cut(s) 104, 530
HpyF3I CTNAG 1 cut(s) 863
HpySE526I ACGT 3 cut(s) 246, 280, 725
Hsp92I GRCGYC 1 cut(s) 280
Hsp92II CATG 5 cut(s) 125, 388, 649, 661, 840
Kpn2I TCCGGA 1 cut(s) 211
KpnI GGTACC 1 cut(s) 35
Kzo9I GATC 3 cut(s) 208, 238, 745
LguI GCTCTTC 2 cut(s) 180, 963
LmnI GCTCC 1 cut(s) 54
Lsp1109I GCAGC 1 cut(s) 508
LweI GCATC 3 cut(s) 508, 549, 1084
MaeI CTAG 2 cut(s) 117, 182
MaeII ACGT 3 cut(s) 246, 280, 725
MaeIII GTNAC 5 cut(s) 226, 242, 247, 569, 857
MalI GATC 3 cut(s) 210, 240, 747
MboI GATC 3 cut(s) 208, 238, 745
MboII GAAGA 7 cut(s) 105, 137, 197, 389, 696, 943, 980
MhlI GDGCHC 4 cut(s) 51, 86, 192, 497
MluCI AATT 7 cut(s) 60, 100, 200, 498, 616, 938, 1028
MmeI TCCRAC 2 cut(s) 301, 520
MnlI CCTC 9 cut(s) 121, 136, 164, 169, 227, 381, 536, 880, 951
MroI TCCGGA 1 cut(s) 211
MseI TTAA 4 cut(s) 59, 327, 818, 945
MslI CAYNNNNRTG 2 cut(s) 126, 662
MspI CCGG 4 cut(s) 29, 212, 669, 882
MspR9I CCNGG 4 cut(s) 669, 670, 883, 1010
Mva1269I GAATGC 1 cut(s) 669
MvaI CCWGG 1 cut(s) 1010
MwoI GCNNNNNNNGC 2 cut(s) 104, 530
NciI CCSGG 3 cut(s) 669, 670, 883
NdeII GATC 3 cut(s) 208, 238, 745
NlaIII CATG 5 cut(s) 125, 388, 649, 661, 840
NlaIV GGNNCC 3 cut(s) 33, 275, 1036
NmeAIII GCCGAG 2 cut(s) 617, 879
NmuCI GTSAC 2 cut(s) 247, 857
PagI TCATGA 1 cut(s) 645
PceI AGGCCT 1 cut(s) 800
PciSI GCTCTTC 2 cut(s) 180, 963
PcsI WCGNNNNNNNCGW 1 cut(s) 238
PctI GAATGC 1 cut(s) 669
PfeI GAWTC 1 cut(s) 642
PinAI ACCGGT 1 cut(s) 28
PkrI GCNGC 1 cut(s) 523
Ple19I CGATCG 1 cut(s) 241
Ppu21I YACGTR 1 cut(s) 726
PshBI ATTAAT 1 cut(s) 59
PsiI TTATAA 1 cut(s) 692
Psp124BI GAGCTC 1 cut(s) 192
Psp6I CCWGG 1 cut(s) 1008
PspEI GGTNACC 1 cut(s) 569
PspGI CCWGG 1 cut(s) 1008
PspN4I GGNNCC 3 cut(s) 33, 275, 1036
PspPI GGNCC 2 cut(s) 274, 1034
PvuI CGATCG 1 cut(s) 241
RsaI GTAC 2 cut(s) 33, 458
RsaNI GTAC 2 cut(s) 32, 457
RseI CAYNNNNRTG 2 cut(s) 126, 662
SacI GAGCTC 1 cut(s) 192
SapI GCTCTTC 2 cut(s) 180, 963
SaqAI TTAA 4 cut(s) 59, 327, 818, 945
SatI GCNGC 1 cut(s) 522
Sau3AI GATC 3 cut(s) 208, 238, 745
Sau96I GGNCC 2 cut(s) 274, 1034
ScrFI CCNGG 4 cut(s) 669, 670, 883, 1010
SduI GDGCHC 4 cut(s) 51, 86, 192, 497
SfaNI GCATC 3 cut(s) 508, 549, 1084
SfcI CTRYAG 1 cut(s) 486
SinI GGWCC 2 cut(s) 274, 1034
SmaI CCCGGG 1 cut(s) 670
SmiMI CAYNNNNRTG 2 cut(s) 126, 662
SmlI CTYRAG 2 cut(s) 191, 872
SmoI CTYRAG 2 cut(s) 191, 872
Sse9I AATT 7 cut(s) 60, 100, 200, 498, 616, 938, 1028
SseBI AGGCCT 1 cut(s) 800
SsiI CCGC 2 cut(s) 52, 1038
SspI AATATT 2 cut(s) 765, 907
SspMI CTAG 2 cut(s) 117, 182
SstI GAGCTC 1 cut(s) 192
StuI AGGCCT 1 cut(s) 800
StyD4I CCNGG 4 cut(s) 667, 668, 881, 1008
TaaI ACNGT 4 cut(s) 81, 289, 781, 1090
TaiI ACGT 3 cut(s) 249, 283, 728
TaqI TCGA 4 cut(s) 375, 738, 788, 830
TasI AATT 7 cut(s) 60, 100, 200, 498, 616, 938, 1028
TfiI GAWTC 1 cut(s) 642
Tru1I TTAA 4 cut(s) 59, 327, 818, 945
Tru9I TTAA 4 cut(s) 59, 327, 818, 945
TscAI CASTG 2 cut(s) 271, 294
TseFI GTSAC 2 cut(s) 247, 857
TseI GCWGC 1 cut(s) 521
Tsp45I GTSAC 2 cut(s) 247, 857
TspDTI ATGAA 3 cut(s) 138, 662, 998
TspGWI ACGGA 2 cut(s) 179, 816
TspMI CCCGGG 1 cut(s) 668
TspRI CASTG 2 cut(s) 271, 294
VneI GTGCAC 2 cut(s) 82, 493
VpaK11BI GGWCC 2 cut(s) 274, 1034
VspI ATTAAT 1 cut(s) 59
XapI RAATTY 2 cut(s) 938, 1028
XbaI TCTAGA 1 cut(s) 116
XcmI CCANNNNNNNNNTGG 1 cut(s) 422
XmaI CCCGGG 1 cut(s) 668
XmiI GTMKAC 1 cut(s) 918
XspI CTAG 2 cut(s) 117, 182
ZraI GACGTC 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.