Basic Information
Type: gene
Physical Location & Seq
Genomic Coordinates
Forward (+)
36416769 .. 36417955
Transcript / Protein ID
FvH4_3g43731.t1
Length: 1098 bp
Copy
ATGGCTTCACAATCAAGATGGACGAAACCGGTACCAGAAAAAGAAGTGCTCCGCCGATTAATTGCCGAACACAGAAAACTGTGCACAAGTCAGAAGGCTAATTCTGCGACCTCTTCTAGACATGAAGATGTTGATTATCACGAGGCCAAAGACCTCTCTATCACGGAAATAAAGGAGGAACTAGAAGAGCTCAAGCAGAAATTAGATGATCCGGACTTTAGTTTGGTTACACGAGGCGATCGTAACGTGACCTATCGTGCTTGCAGTGATGGGGTCCGACGTCTTACAGTGAAAAATATAAATACACGCTCTAAACCAAAAGATGTTAAAAGAAACGATGTGAGTGATGTGATTGATTATATTCTCAAATCCATCGAAGAAAACATGAGGGAAACACATCAAGGGGGGTATTACCAAAAAAGAAATGGCGATAAAAAGTTCAAGAAAGAACAAATGTACGACATTATTGATGATATATGTTGCACTATAGGGTGCACAATTCCAAGTTTCCCCGTAGATGCTGCTGAAAAAGCTTTTGTTGGAGGTCGGCTTTCGTGGATGCAGAATGGTTACCCAACCTATTGTCAAAGCCGAGATGATGGGGTGGCCGTCCCTAATTTGCGTTCAAAGATGATTTGGAGAATCATGAAGCCAAGCATGGGAATGCCCGGGGTGGGGGGCAGAAGATTTATAAAGCTGTTGTGGGAGACTTTCAGGCTTCCCACGTATGGCCTTTTCGATTGTGATCCATCAGGTATCATAATATTCAACACTTATACTGTTGGGTCGATTGAAAAGGCCTACGACAATGTAAGTTTAACTTGTCCGTCGATGACATGGTTAGGTGTTTGGCCGAGTGACCTAAGAGACCTTGAGATAGCCGGGGAGGATTTGAGTGAAAAGAATATTCAAGAAGTAGACAATCTTTTGAAGAAAGAATTTGTTAAAGATAATCCGAGGTTGAAAGAAGAGCTGAAAGAAATGAAAAGGACAGGGAAAAAAGCCAACCTGGAAGCTTTGAAGGAGAAATTTGGACCCGCTTGGTTGTCAAAGGGCTTTTTGCCGTATAAGTTGCATCGTCTTTTGACCGTGAAGTGA
Gene Ontology
Molecular Function Biological Process Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families
Protein Analysis
8.89
Isoelectric Point (pI)
Domain Name
Pfam ID
Position
E-value
Description
TOP6A-Spo11_Toprim
PF21180
219 - 358
1.3e-34
Topoisomerase 6 subunit A/Spo11, Toprim domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...
Gene Family Tree
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Align Labels (Cladogram)
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Original Protein Labels (.nwk)
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Publication-ready
Orthologous Genes
(Group: OG0004536)
Restriction Enzyme Sites
Enzyme
Recognition Site
Cut Count
Positions (bp)
AanI
TTATAA
1 cut(s)
692
AatII
GACGTC
1 cut(s)
283
Acc65I
GGTACC
1 cut(s)
31
AccB1I
GGYRCC
1 cut(s)
31
AccI
GTMKAC
1 cut(s)
918
AccIII
TCCGGA
1 cut(s)
211
AciI
CCGC
2 cut(s)
52, 1038
AclWI
GGATC
2 cut(s)
203, 740
AcoI
YGGCCR
2 cut(s)
606, 851
AcsI
RAATTY
2 cut(s)
938, 1028
AcyI
GRCGYC
1 cut(s)
280
AfaI
GTAC
2 cut(s)
33, 458
AfiI
CCNNNNNNNGG
4 cut(s)
659, 674, 675, 728
AgeI
ACCGGT
1 cut(s)
28
AgsI
TTSAA
8 cut(s)
442, 627, 769, 794, 911, 931, 964, 1021
AjnI
CCWGG
1 cut(s)
1008
AluBI
AGCT
5 cut(s)
190, 533, 697, 973, 1016
AluI
AGCT
5 cut(s)
190, 533, 697, 973, 1016
Alw21I
GWGCWC
4 cut(s)
51, 86, 192, 497
Alw26I
GTCTC
2 cut(s)
701, 861
Alw44I
GTGCAC
2 cut(s)
82, 493
AlwI
GGATC
2 cut(s)
203, 740
Ama87I
CYCGRG
1 cut(s)
668
Aor13HI
TCCGGA
1 cut(s)
211
AoxI
GGCC
5 cut(s)
144, 606, 730, 798, 851
ApaLI
GTGCAC
2 cut(s)
82, 493
ApeKI
GCWGC
1 cut(s)
521
ApoI
RAATTY
2 cut(s)
938, 1028
AseI
ATTAAT
1 cut(s)
59
AsiGI
ACCGGT
1 cut(s)
28
Asp718I
GGTACC
1 cut(s)
31
AspS9I
GGNCC
2 cut(s)
274, 1034
AsuC2I
CCSGG
3 cut(s)
669, 670, 883
AvaI
CYCGRG
1 cut(s)
668
AvaII
GGWCC
2 cut(s)
274, 1034
BaeGI
GKGCMC
2 cut(s)
86, 497
BanI
GGYRCC
1 cut(s)
31
BanII
GRGCYC
1 cut(s)
192
BauI
CACGAG
2 cut(s)
140, 231
Bbv12I
GWGCWC
4 cut(s)
51, 86, 192, 497
BbvI
GCAGC
1 cut(s)
508
BccI
CCATC
5 cut(s)
12, 263, 380, 593, 757
BceAI
ACGGC
2 cut(s)
593, 1048
BciT130I
CCWGG
1 cut(s)
1010
BcnI
CCSGG
3 cut(s)
669, 670, 883
BcoDI
GTCTC
2 cut(s)
701, 861
BfaI
CTAG
2 cut(s)
117, 182
BfmI
CTRYAG
1 cut(s)
486
BisI
GCNGC
1 cut(s)
522
BlsI
GCNGC
1 cut(s)
523
Bme1390I
CCNGG
4 cut(s)
669, 670, 883, 1010
Bme18I
GGWCC
2 cut(s)
274, 1034
BmeT110I
CYCGRG
1 cut(s)
668
BmgT120I
GGNCC
2 cut(s)
274, 1034
BmiI
GGNNCC
3 cut(s)
33, 275, 1036
BmrFI
CCNGG
4 cut(s)
669, 670, 883, 1010
BmsI
GCATC
3 cut(s)
508, 549, 1084
BpuEI
CTTGAG
2 cut(s)
176, 893
BpuMI
CCSGG
3 cut(s)
669, 670, 883
BsaAI
YACGTR
1 cut(s)
726
BsaBI
GATNNNNATC
1 cut(s)
744
BsaHI
GRCGYC
1 cut(s)
280
BsaI
GGTCTC
1 cut(s)
861
BsaJI
CCNNGG
4 cut(s)
668, 669, 882, 956
BsaWI
WCCGGW
2 cut(s)
28, 211
Bsc4I
CCNNNNNNNGG
4 cut(s)
659, 674, 675, 728
Bse118I
RCCGGY
1 cut(s)
28
Bse8I
GATNNNNATC
1 cut(s)
744
BseAI
TCCGGA
1 cut(s)
211
BseBI
CCWGG
1 cut(s)
1010
BseDI
CCNNGG
4 cut(s)
668, 669, 882, 956
BseGI
GGATG
1 cut(s)
564
BseJI
GATNNNNATC
1 cut(s)
744
BseLI
CCNNNNNNNGG
4 cut(s)
659, 674, 675, 728
BseSI
GKGCMC
2 cut(s)
86, 497
BseXI
GCAGC
1 cut(s)
508
Bsh1285I
CGRYCG
1 cut(s)
241
BshFI
GGCC
5 cut(s)
146, 608, 732, 800, 853
BshNI
GGYRCC
1 cut(s)
31
BshTI
ACCGGT
1 cut(s)
28
BsiEI
CGRYCG
1 cut(s)
241
BsiHKAI
GWGCWC
4 cut(s)
51, 86, 192, 497
BsiHKCI
CYCGRG
1 cut(s)
668
BsiSI
CCGG
4 cut(s)
29, 212, 669, 882
BslFI
GGGAC
1 cut(s)
596
BslI
CCNNNNNNNGG
4 cut(s)
659, 674, 675, 728
BsmAI
GTCTC
2 cut(s)
701, 861
BsmFI
GGGAC
1 cut(s)
596
BsmI
GAATGC
1 cut(s)
669
BsnI
GGCC
5 cut(s)
146, 608, 732, 800, 853
Bso31I
GGTCTC
1 cut(s)
861
BsoBI
CYCGRG
1 cut(s)
668
Bsp1286I
GDGCHC
4 cut(s)
51, 86, 192, 497
Bsp13I
TCCGGA
1 cut(s)
211
Bsp143I
GATC
3 cut(s)
208, 238, 745
BspACI
CCGC
2 cut(s)
52, 1038
BspANI
GGCC
5 cut(s)
146, 608, 732, 800, 853
BspEI
TCCGGA
1 cut(s)
211
BspHI
TCATGA
1 cut(s)
645
BspLI
GGNNCC
3 cut(s)
33, 275, 1036
BspPI
GGATC
2 cut(s)
203, 740
BspQI
GCTCTTC
2 cut(s)
180, 963
BspT107I
GGYRCC
1 cut(s)
31
BspTNI
GGTCTC
1 cut(s)
861
BsrFI
RCCGGY
1 cut(s)
28
BssAI
RCCGGY
1 cut(s)
28
BssECI
CCNNGG
4 cut(s)
668, 669, 882, 956
BssMI
GATC
3 cut(s)
208, 238, 745
BssNI
GRCGYC
1 cut(s)
280
BssSI
CACGAG
2 cut(s)
140, 231
Bst2BI
CACGAG
2 cut(s)
140, 231
Bst2UI
CCWGG
1 cut(s)
1010
Bst4CI
ACNGT
4 cut(s)
81, 289, 781, 1090
Bst6I
CTCTTC
3 cut(s)
118, 180, 963
BstACI
GRCGYC
1 cut(s)
280
BstBAI
YACGTR
1 cut(s)
726
BstC8I
GCNNGC
1 cut(s)
262
BstDEI
CTNAG
1 cut(s)
863
BstEII
GGTNACC
1 cut(s)
569
BstF5I
GGATG
1 cut(s)
564
BstKTI
GATC
3 cut(s)
211, 241, 748
BstMAI
GTCTC
2 cut(s)
701, 861
BstMBI
GATC
3 cut(s)
208, 238, 745
BstMCI
CGRYCG
1 cut(s)
241
BstMWI
GCNNNNNNNGC
2 cut(s)
104, 530
BstNI
CCWGG
1 cut(s)
1010
BstPI
GGTNACC
1 cut(s)
569
BstSCI
CCNGG
4 cut(s)
667, 668, 881, 1008
BstSFI
CTRYAG
1 cut(s)
486
BstSLI
GKGCMC
2 cut(s)
86, 497
BstV1I
GCAGC
1 cut(s)
508
BsuRI
GGCC
5 cut(s)
146, 608, 732, 800, 853
BtsCI
GGATG
1 cut(s)
564
BtsI
GCAGTG
1 cut(s)
271
BtsIMutI
CAGTG
2 cut(s)
271, 294
Cac8I
GCNNGC
1 cut(s)
262
CciI
TCATGA
1 cut(s)
645
Cfr10I
RCCGGY
1 cut(s)
28
Cfr13I
GGNCC
2 cut(s)
274, 1034
Cfr9I
CCCGGG
1 cut(s)
668
Csp6I
GTAC
2 cut(s)
32, 457
CspAI
ACCGGT
1 cut(s)
28
CviAII
CATG
5 cut(s)
122, 385, 646, 658, 837
CviQI
GTAC
2 cut(s)
32, 457
DdeI
CTNAG
1 cut(s)
863
DpnI
GATC
3 cut(s)
210, 240, 747
DpnII
GATC
3 cut(s)
208, 238, 745
EaeI
YGGCCR
2 cut(s)
606, 851
Eam1104I
CTCTTC
3 cut(s)
118, 180, 963
EarI
CTCTTC
3 cut(s)
118, 180, 963
EciI
GGCGGA
1 cut(s)
41
Ecl136II
GAGCTC
1 cut(s)
190
Eco147I
AGGCCT
1 cut(s)
800
Eco24I
GRGCYC
1 cut(s)
192
Eco31I
GGTCTC
1 cut(s)
861
Eco47I
GGWCC
2 cut(s)
274, 1034
Eco53kI
GAGCTC
1 cut(s)
190
Eco88I
CYCGRG
1 cut(s)
668
Eco91I
GGTNACC
1 cut(s)
569
EcoICRI
GAGCTC
1 cut(s)
190
EcoO65I
GGTNACC
1 cut(s)
569
EcoRII
CCWGG
1 cut(s)
1008
EcoT38I
GRGCYC
1 cut(s)
192
FaeI
CATG
5 cut(s)
125, 388, 649, 661, 840
FalI
AAGNNNNNCTT
2 cut(s)
805, 837
FaqI
GGGAC
1 cut(s)
596
FatI
CATG
5 cut(s)
121, 384, 645, 657, 836
FauI
CCCGC
1 cut(s)
1045
FblI
GTMKAC
1 cut(s)
918
Fnu4HI
GCNGC
1 cut(s)
522
FokI
GGATG
1 cut(s)
571
FriOI
GRGCYC
1 cut(s)
192
Fsp4HI
GCNGC
1 cut(s)
522
FspBI
CTAG
2 cut(s)
117, 182
GluI
GCNGC
1 cut(s)
522
HaeIII
GGCC
5 cut(s)
146, 608, 732, 800, 853
HapII
CCGG
4 cut(s)
29, 212, 669, 882
Hin1I
GRCGYC
1 cut(s)
280
Hin1II
CATG
5 cut(s)
125, 388, 649, 661, 840
HindIII
AAGCTT
2 cut(s)
531, 1014
HinfI
GANTC
1 cut(s)
642
HpaII
CCGG
4 cut(s)
29, 212, 669, 882
Hpy166II
GTNNAC
3 cut(s)
84, 495, 919
Hpy188I
TCNGA
3 cut(s)
93, 278, 957
Hpy188III
TCNNGA
7 cut(s)
15, 117, 140, 212, 442, 646, 911
Hpy8I
GTNNAC
3 cut(s)
84, 495, 919
Hpy99I
CGWCG
2 cut(s)
282, 832
HpyAV
CCTTC
2 cut(s)
88, 1015
HpyCH4III
ACNGT
4 cut(s)
81, 289, 781, 1090
HpyCH4IV
ACGT
3 cut(s)
246, 280, 725
HpyCH4V
TGCA
6 cut(s)
84, 264, 483, 495, 562, 1075
HpyF10VI
GCNNNNNNNGC
2 cut(s)
104, 530
HpyF3I
CTNAG
1 cut(s)
863
HpySE526I
ACGT
3 cut(s)
246, 280, 725
Hsp92I
GRCGYC
1 cut(s)
280
Hsp92II
CATG
5 cut(s)
125, 388, 649, 661, 840
Kpn2I
TCCGGA
1 cut(s)
211
KpnI
GGTACC
1 cut(s)
35
Kzo9I
GATC
3 cut(s)
208, 238, 745
LguI
GCTCTTC
2 cut(s)
180, 963
LmnI
GCTCC
1 cut(s)
54
Lsp1109I
GCAGC
1 cut(s)
508
LweI
GCATC
3 cut(s)
508, 549, 1084
MaeI
CTAG
2 cut(s)
117, 182
MaeII
ACGT
3 cut(s)
246, 280, 725
MaeIII
GTNAC
5 cut(s)
226, 242, 247, 569, 857
MalI
GATC
3 cut(s)
210, 240, 747
MboI
GATC
3 cut(s)
208, 238, 745
MboII
GAAGA
7 cut(s)
105, 137, 197, 389, 696, 943, 980
MhlI
GDGCHC
4 cut(s)
51, 86, 192, 497
MluCI
AATT
7 cut(s)
60, 100, 200, 498, 616, 938, 1028
MmeI
TCCRAC
2 cut(s)
301, 520
MnlI
CCTC
9 cut(s)
121, 136, 164, 169, 227, 381, 536, 880, 951
MroI
TCCGGA
1 cut(s)
211
MseI
TTAA
4 cut(s)
59, 327, 818, 945
MslI
CAYNNNNRTG
2 cut(s)
126, 662
MspI
CCGG
4 cut(s)
29, 212, 669, 882
MspR9I
CCNGG
4 cut(s)
669, 670, 883, 1010
Mva1269I
GAATGC
1 cut(s)
669
MvaI
CCWGG
1 cut(s)
1010
MwoI
GCNNNNNNNGC
2 cut(s)
104, 530
NciI
CCSGG
3 cut(s)
669, 670, 883
NdeII
GATC
3 cut(s)
208, 238, 745
NlaIII
CATG
5 cut(s)
125, 388, 649, 661, 840
NlaIV
GGNNCC
3 cut(s)
33, 275, 1036
NmeAIII
GCCGAG
2 cut(s)
617, 879
NmuCI
GTSAC
2 cut(s)
247, 857
PagI
TCATGA
1 cut(s)
645
PceI
AGGCCT
1 cut(s)
800
PciSI
GCTCTTC
2 cut(s)
180, 963
PcsI
WCGNNNNNNNCGW
1 cut(s)
238
PctI
GAATGC
1 cut(s)
669
PfeI
GAWTC
1 cut(s)
642
PinAI
ACCGGT
1 cut(s)
28
PkrI
GCNGC
1 cut(s)
523
Ple19I
CGATCG
1 cut(s)
241
Ppu21I
YACGTR
1 cut(s)
726
PshBI
ATTAAT
1 cut(s)
59
PsiI
TTATAA
1 cut(s)
692
Psp124BI
GAGCTC
1 cut(s)
192
Psp6I
CCWGG
1 cut(s)
1008
PspEI
GGTNACC
1 cut(s)
569
PspGI
CCWGG
1 cut(s)
1008
PspN4I
GGNNCC
3 cut(s)
33, 275, 1036
PspPI
GGNCC
2 cut(s)
274, 1034
PvuI
CGATCG
1 cut(s)
241
RsaI
GTAC
2 cut(s)
33, 458
RsaNI
GTAC
2 cut(s)
32, 457
RseI
CAYNNNNRTG
2 cut(s)
126, 662
SacI
GAGCTC
1 cut(s)
192
SapI
GCTCTTC
2 cut(s)
180, 963
SaqAI
TTAA
4 cut(s)
59, 327, 818, 945
SatI
GCNGC
1 cut(s)
522
Sau3AI
GATC
3 cut(s)
208, 238, 745
Sau96I
GGNCC
2 cut(s)
274, 1034
ScrFI
CCNGG
4 cut(s)
669, 670, 883, 1010
SduI
GDGCHC
4 cut(s)
51, 86, 192, 497
SfaNI
GCATC
3 cut(s)
508, 549, 1084
SfcI
CTRYAG
1 cut(s)
486
SinI
GGWCC
2 cut(s)
274, 1034
SmaI
CCCGGG
1 cut(s)
670
SmiMI
CAYNNNNRTG
2 cut(s)
126, 662
SmlI
CTYRAG
2 cut(s)
191, 872
SmoI
CTYRAG
2 cut(s)
191, 872
Sse9I
AATT
7 cut(s)
60, 100, 200, 498, 616, 938, 1028
SseBI
AGGCCT
1 cut(s)
800
SsiI
CCGC
2 cut(s)
52, 1038
SspI
AATATT
2 cut(s)
765, 907
SspMI
CTAG
2 cut(s)
117, 182
SstI
GAGCTC
1 cut(s)
192
StuI
AGGCCT
1 cut(s)
800
StyD4I
CCNGG
4 cut(s)
667, 668, 881, 1008
TaaI
ACNGT
4 cut(s)
81, 289, 781, 1090
TaiI
ACGT
3 cut(s)
249, 283, 728
TaqI
TCGA
4 cut(s)
375, 738, 788, 830
TasI
AATT
7 cut(s)
60, 100, 200, 498, 616, 938, 1028
TfiI
GAWTC
1 cut(s)
642
Tru1I
TTAA
4 cut(s)
59, 327, 818, 945
Tru9I
TTAA
4 cut(s)
59, 327, 818, 945
TscAI
CASTG
2 cut(s)
271, 294
TseFI
GTSAC
2 cut(s)
247, 857
TseI
GCWGC
1 cut(s)
521
Tsp45I
GTSAC
2 cut(s)
247, 857
TspDTI
ATGAA
3 cut(s)
138, 662, 998
TspGWI
ACGGA
2 cut(s)
179, 816
TspMI
CCCGGG
1 cut(s)
668
TspRI
CASTG
2 cut(s)
271, 294
VneI
GTGCAC
2 cut(s)
82, 493
VpaK11BI
GGWCC
2 cut(s)
274, 1034
VspI
ATTAAT
1 cut(s)
59
XapI
RAATTY
2 cut(s)
938, 1028
XbaI
TCTAGA
1 cut(s)
116
XcmI
CCANNNNNNNNNTGG
1 cut(s)
422
XmaI
CCCGGG
1 cut(s)
668
XmiI
GTMKAC
1 cut(s)
918
XspI
CTAG
2 cut(s)
117, 182
ZraI
GACGTC
1 cut(s)
281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.