Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004536

Physical Location & Seq

Genomic Coordinates Reverse (-)

3914122 .. 3915204

Gene Structure 1083 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46515

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGCTTATGAGAACGCTCTAATAGAAGATCCCAATCGTTACGAGGTCAAAGACCTCTCTATAGAGGAAGTACAGGAGAAACTTGAAGCTCTCAAGAAAAAATTAGATGATGGGAGCTTTAGTTGCATTTCACGAGACAAGTCCAACGTGACCTATGGTGAGTGTAGCGATGGCGTCAAACGTCTTACAGTGAAGGATATAAATAAACGCTCTAAACCAGGAGATGAAAAAAGAAAAAATATCCGTTTGATGGTTGATCTTATTCTCAAGTTCTTCCAAGCAAACAAGCGAGAAACACATCGTGGGGTGTTTTACGTAGGGAATAATACCAGTTCATTGTTCCGACAAAAAGATGAGTACGAAATTCTTGATGACATCTGTTCTACTATAAGGTGCAGCAGTTCAAGTCTCTACGTAGATGCTAGTGTAAGAGGCGTTGTTGCAGGTCTGCTTTCTTTCGAGCTGGGAGGGCATGAAACCTTTTGTACGAGCCGGGACGATGGGGTACCCATCCCGCTGAATTCAGATATTAAAATGAAGAATCGTGGAGCCAAGTTCATATTGGTGGTGGAAAATAAATCCGCTTTCAATACATTGATGCAAGATAAGTTTTACAATGATTATCCATGTATAATCATCACCGGAATGGGAATGCCGGAGGTGGCGACCAGAAGATTTTTAAAGCTATTGTCGGACAATTTTGGGCTTCCAGTGTACGGCCTTTTCGACTGTGATCCAGAAGGCATCAAAATGTTTACAATTTATACTGTTGGATCATATGAGGATGCCTTCGATAGTGTAAACTTAACTTGGCCGTATATGACGTGGTTGGGTGTTTGGCCGAGTGACCTATGTGCGCTTGATATACCCTGCAAGGATTTGAGTCCGAGTGAGATTGCATTGGTAGATTATCTTTTGAGAGAAGATTTTGTGAAAGAGAATCCGAGGTTGGTTGAGGAGCTGGAACATATGAAAATAACGGAGAAAAAAGCGAATCTTGAAGCTTTGAAGGAATTTGGGCCCACTTGTTTGTCCAAGTACTATTTGCCATATAAGTTGAATTATCTTTTGACCGCGCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000706 GO:0000729 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003916 GO:0003918 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0016889 GO:0016894 GO:0017111 GO:0022402 GO:0022414 GO:0030957 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0035825 GO:0042138 GO:0042623 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046983 GO:0048285 GO:0050896 GO:0051321 GO:0051716 GO:0061505 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

TP6A_N

Protein Analysis

360

Amino Acids

41.06

Weight (kDa)

5.24

Isoelectric Point (pI)

41.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TOP6A-Spo11_Toprim	PF21180	186 - 353	1.3e-47	Topoisomerase 6 subunit A/Spo11, Toprim domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004536)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43731 FvH4_3g43753
rosa_chinensis	RchiOBHm_Chr2g0086091 RchiOBHm_Chr2g0089291 RchiOBHm_Chr2g0089851 RchiOBHm_Chr5g0083311
rosa_laevigata	RLG00000015741 RLG00000016061 RLG00000017209
rosa_multiflora	Rmu_co8293021.1_g000001 Rmu_co8360049.1_g000001 Rmu_sc0000388.1_g000047 Rmu_sc0002384.1_g000009 Rmu_sc0003382.1_g000021 Rmu_sc0017765.1_g000002 Rmu_ssc0000355.1_g000016
rosa_roxburghii	Rroxscaffold_2G00140180 Rroxscaffold_2G00151540
rosa_rugosa	Rorug01G0465600 Rorug01G0488800 Rorug02G0003700
rosa_samantha	Rh2AG015000 Rh2AG045100 Rh2AG048900 Rh2BG047800 Rh2CG016000 Rh2CG016100 Rh2CG045000 Rh2CG049900 Rh5BG561000 Rh5CG583600
rosa_wichuraiana	Rw2G001320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	434
Acc65I	GGTACC	1 cut(s)	505
AccB1I	GGYRCC	1 cut(s)	505
AccII	CGCG	1 cut(s)	1076
AciI	CCGC	3 cut(s)	515, 582, 1074
AclWI	GGATC	3 cut(s)	23, 728, 781
AcoI	YGGCCR	2 cut(s)	812, 839
AcsI	RAATTY	3 cut(s)	363, 520, 1013
AcyI	GRCGYC	1 cut(s)	174
AdeI	CACNNNGTG	1 cut(s)	302
AfaI	GTAC	6 cut(s)	72, 359, 487, 507, 716, 1040
AfiI	CCNNNNNNNGG	2 cut(s)	250, 716
AgsI	TTSAA	6 cut(s)	86, 405, 589, 1001, 1009, 1060
AjiI	CACGTC	1 cut(s)	825
AjnI	CCWGG	1 cut(s)	217
AjuI	GAANNNNNNNTTGG	2 cut(s)	932, 964
AluBI	AGCT	6 cut(s)	89, 117, 463, 685, 961, 1004
AluI	AGCT	6 cut(s)	89, 117, 463, 685, 961, 1004
Alw26I	GTCTC	2 cut(s)	129, 413
AlwI	GGATC	3 cut(s)	23, 728, 781
AoxI	GGCC	4 cut(s)	718, 812, 839, 1019
ApaI	GGGCCC	1 cut(s)	1023
ApeKI	GCWGC	1 cut(s)	396
ApoI	RAATTY	3 cut(s)	363, 520, 1013
Asp718I	GGTACC	1 cut(s)	505
AspLEI	GCGC	2 cut(s)	859, 1078
AspS9I	GGNCC	2 cut(s)	1019, 1020
AsuC2I	CCSGG	1 cut(s)	494
AsuHPI	GGTGA	2 cut(s)	170, 631
BaeGI	GKGCMC	1 cut(s)	1023
BanI	GGYRCC	1 cut(s)	505
BanII	GRGCYC	1 cut(s)	1023
BauI	CACGAG	1 cut(s)	132
BbvI	GCAGC	1 cut(s)	408
BccI	CCATC	5 cut(s)	104, 164, 244, 494, 518
BceAI	ACGGC	3 cut(s)	733, 799, 1063
BciT130I	CCWGG	1 cut(s)	219
BcnI	CCSGG	1 cut(s)	494
BcoDI	GTCTC	2 cut(s)	129, 413
BfaI	CTAG	1 cut(s)	423
BfmI	CTRYAG	1 cut(s)	60
BfuAI	ACCTGC	1 cut(s)	434
BisI	GCNGC	1 cut(s)	397
BlsI	GCNGC	1 cut(s)	398
BmcAI	AGTACT	1 cut(s)	1040
Bme1390I	CCNGG	2 cut(s)	219, 494
BmgBI	CACGTC	1 cut(s)	825
BmgT120I	GGNCC	2 cut(s)	1019, 1020
BmiI	GGNNCC	3 cut(s)	507, 550, 1021
BmrFI	CCNGG	2 cut(s)	219, 494
BmsI	GCATC	4 cut(s)	409, 588, 753, 775
BpuEI	CTTGAG	2 cut(s)	77, 251
BpuMI	CCSGG	1 cut(s)	494
BsaAI	YACGTR	2 cut(s)	316, 415
BsaBI	GATNNNNATC	1 cut(s)	33
BsaHI	GRCGYC	1 cut(s)	174
BsaJI	CCNNGG	1 cut(s)	944
BsaWI	WCCGGW	1 cut(s)	641
BsaXI	ACNNNNNCTCC	2 cut(s)	106, 136
Bsc4I	CCNNNNNNNGG	2 cut(s)	250, 716
Bse1I	ACTGG	2 cut(s)	330, 710
Bse8I	GATNNNNATC	1 cut(s)	33
BseBI	CCWGG	1 cut(s)	219
BseDI	CCNNGG	1 cut(s)	944
BseGI	GGATG	2 cut(s)	510, 790
BseJI	GATNNNNATC	1 cut(s)	33
BseLI	CCNNNNNNNGG	2 cut(s)	250, 716
BseNI	ACTGG	2 cut(s)	330, 710
BseRI	GAGGAG	1 cut(s)	971
BseSI	GKGCMC	1 cut(s)	1023
BseXI	GCAGC	1 cut(s)	408
BseYI	CCCAGC	1 cut(s)	463
BsgI	GTGCAG	1 cut(s)	415
Bsh1236I	CGCG	1 cut(s)	1076
BshFI	GGCC	4 cut(s)	720, 814, 841, 1021
BshNI	GGYRCC	1 cut(s)	505
BsiSI	CCGG	3 cut(s)	493, 642, 656
BslFI	GGGAC	1 cut(s)	509
BslI	CCNNNNNNNGG	2 cut(s)	250, 716
BsmAI	GTCTC	2 cut(s)	129, 413
BsmFI	GGGAC	1 cut(s)	509
BsmI	GAATGC	1 cut(s)	657
BsnI	GGCC	4 cut(s)	720, 814, 841, 1021
Bsp120I	GGGCCC	1 cut(s)	1019
Bsp1286I	GDGCHC	1 cut(s)	1023
Bsp143I	GATC	4 cut(s)	28, 256, 733, 773
BspACI	CCGC	3 cut(s)	515, 582, 1074
BspANI	GGCC	4 cut(s)	720, 814, 841, 1021
BspFNI	CGCG	1 cut(s)	1076
BspLI	GGNNCC	3 cut(s)	507, 550, 1021
BspMI	ACCTGC	1 cut(s)	434
BspPI	GGATC	3 cut(s)	23, 728, 781
BspT107I	GGYRCC	1 cut(s)	505
BsrI	ACTGG	2 cut(s)	330, 710
BssECI	CCNNGG	1 cut(s)	944
BssMI	GATC	4 cut(s)	28, 256, 733, 773
BssNI	GRCGYC	1 cut(s)	174
BssSI	CACGAG	1 cut(s)	132
Bst2BI	CACGAG	1 cut(s)	132
Bst2UI	CCWGG	1 cut(s)	219
Bst4CI	ACNGT	3 cut(s)	190, 731, 769
BstACI	GRCGYC	1 cut(s)	174
BstBAI	YACGTR	2 cut(s)	316, 415
BstF5I	GGATG	2 cut(s)	510, 790
BstFNI	CGCG	1 cut(s)	1076
BstHHI	GCGC	2 cut(s)	859, 1078
BstKTI	GATC	4 cut(s)	31, 259, 736, 776
BstMAI	GTCTC	2 cut(s)	129, 413
BstMBI	GATC	4 cut(s)	28, 256, 733, 773
BstMWI	GCNNNNNNNGC	2 cut(s)	123, 469
BstNI	CCWGG	1 cut(s)	219
BstSCI	CCNGG	2 cut(s)	217, 492
BstSFI	CTRYAG	1 cut(s)	60
BstSLI	GKGCMC	1 cut(s)	1023
BstSNI	TACGTA	2 cut(s)	316, 415
BstUI	CGCG	1 cut(s)	1076
BstV1I	GCAGC	1 cut(s)	408
BstX2I	RGATCY	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	28
BsuRI	GGCC	4 cut(s)	720, 814, 841, 1021
BtgZI	GCGATG	1 cut(s)	183
BtrI	CACGTC	1 cut(s)	825
BtsCI	GGATG	2 cut(s)	510, 790
BtsIMutI	CAGTG	2 cut(s)	195, 717
BveI	ACCTGC	1 cut(s)	434
CfoI	GCGC	2 cut(s)	859, 1078
Cfr13I	GGNCC	2 cut(s)	1019, 1020
CseI	GACGC	1 cut(s)	163
Csp6I	GTAC	6 cut(s)	71, 358, 486, 506, 715, 1039
CviAII	CATG	2 cut(s)	473, 627
CviQI	GTAC	6 cut(s)	71, 358, 486, 506, 715, 1039
DpnI	GATC	4 cut(s)	30, 258, 735, 775
DpnII	GATC	4 cut(s)	28, 256, 733, 773
DraI	TTTAAA	1 cut(s)	681
DraIII	CACNNNGTG	1 cut(s)	302
EaeI	YGGCCR	2 cut(s)	812, 839
Eco105I	TACGTA	2 cut(s)	316, 415
Eco24I	GRGCYC	1 cut(s)	1023
EcoRI	GAATTC	1 cut(s)	520
EcoRII	CCWGG	1 cut(s)	217
EcoT38I	GRGCYC	1 cut(s)	1023
FaeI	CATG	2 cut(s)	476, 630
FalI	AAGNNNNNCTT	2 cut(s)	981, 1013
FaqI	GGGAC	1 cut(s)	509
FatI	CATG	2 cut(s)	472, 626
FauI	CCCGC	1 cut(s)	522
FauNDI	CATATG	2 cut(s)	778, 969
Fnu4HI	GCNGC	1 cut(s)	397
FokI	GGATG	2 cut(s)	497, 797
FriOI	GRGCYC	1 cut(s)	1023
Fsp4HI	GCNGC	1 cut(s)	397
FspBI	CTAG	1 cut(s)	423
GlaI	GCGC	2 cut(s)	858, 1077
GluI	GCNGC	1 cut(s)	397
GsaI	CCCAGC	1 cut(s)	467
HaeIII	GGCC	4 cut(s)	720, 814, 841, 1021
HapII	CCGG	3 cut(s)	493, 642, 656
HgaI	GACGC	1 cut(s)	163
HhaI	GCGC	2 cut(s)	859, 1078
Hin1I	GRCGYC	1 cut(s)	174
Hin1II	CATG	2 cut(s)	476, 630
Hin6I	GCGC	2 cut(s)	857, 1076
HinP1I	GCGC	2 cut(s)	857, 1076
HindIII	AAGCTT	1 cut(s)	1002
HinfI	GANTC	4 cut(s)	541, 883, 940, 994
HpaII	CCGG	3 cut(s)	493, 642, 656
HphI	GGTGA	2 cut(s)	170, 631
Hpy166II	GTNNAC	3 cut(s)	715, 756, 802
Hpy188I	TCNGA	5 cut(s)	344, 526, 694, 888, 945
Hpy188III	TCNNGA	5 cut(s)	94, 132, 368, 737, 998
Hpy8I	GTNNAC	3 cut(s)	715, 756, 802
HpyAV	CCTTC	4 cut(s)	187, 734, 799, 1003
HpyCH4III	ACNGT	3 cut(s)	190, 731, 769
HpyCH4IV	ACGT	5 cut(s)	147, 181, 315, 414, 824
HpyCH4V	TGCA	6 cut(s)	126, 396, 443, 601, 873, 899
HpyF10VI	GCNNNNNNNGC	2 cut(s)	123, 469
HpySE526I	ACGT	5 cut(s)	147, 181, 315, 414, 824
Hsp92I	GRCGYC	1 cut(s)	174
Hsp92II	CATG	2 cut(s)	476, 630
HspAI	GCGC	2 cut(s)	857, 1076
KpnI	GGTACC	1 cut(s)	509
Kzo9I	GATC	4 cut(s)	28, 256, 733, 773
LmnI	GCTCC	3 cut(s)	114, 548, 958
Lsp1109I	GCAGC	1 cut(s)	408
LweI	GCATC	4 cut(s)	409, 588, 753, 775
MaeI	CTAG	1 cut(s)	423
MaeII	ACGT	5 cut(s)	147, 181, 315, 414, 824
MaeIII	GTNAC	3 cut(s)	38, 148, 845
MalI	GATC	4 cut(s)	30, 258, 735, 775
MboI	GATC	4 cut(s)	28, 256, 733, 773
MboII	GAAGA	5 cut(s)	38, 265, 550, 684, 935
MflI	RGATCY	1 cut(s)	28
MhlI	GDGCHC	1 cut(s)	1023
MluCI	AATT	7 cut(s)	101, 363, 520, 697, 759, 1013, 1060
MlyI	GAGTC	1 cut(s)	892
MmeI	TCCRAC	4 cut(s)	168, 367, 672, 751
MnlI	CCTC	9 cut(s)	37, 58, 65, 425, 461, 652, 775, 939, 949
MseI	TTAA	3 cut(s)	531, 680, 806
MslI	CAYNNNNRTG	3 cut(s)	563, 644, 749
MspA1I	CMGCKG	1 cut(s)	517
MspI	CCGG	3 cut(s)	493, 642, 656
MspR9I	CCNGG	2 cut(s)	219, 494
Mva1269I	GAATGC	1 cut(s)	657
MvaI	CCWGG	1 cut(s)	219
MvnI	CGCG	1 cut(s)	1076
MwoI	GCNNNNNNNGC	2 cut(s)	123, 469
NciI	CCSGG	1 cut(s)	494
NdeI	CATATG	2 cut(s)	778, 969
NdeII	GATC	4 cut(s)	28, 256, 733, 773
NlaIII	CATG	2 cut(s)	476, 630
NlaIV	GGNNCC	3 cut(s)	507, 550, 1021
NmeAIII	GCCGAG	1 cut(s)	867
NmuCI	GTSAC	2 cut(s)	148, 845
PcsI	WCGNNNNNNNCGW	1 cut(s)	723
PctI	GAATGC	1 cut(s)	657
PfeI	GAWTC	3 cut(s)	541, 940, 994
PkrI	GCNGC	1 cut(s)	398
PleI	GAGTC	1 cut(s)	891
PpsI	GAGTC	1 cut(s)	891
Ppu21I	YACGTR	2 cut(s)	316, 415
Psp6I	CCWGG	1 cut(s)	217
PspFI	CCCAGC	1 cut(s)	463
PspGI	CCWGG	1 cut(s)	217
PspN4I	GGNNCC	3 cut(s)	507, 550, 1021
PspOMI	GGGCCC	1 cut(s)	1019
PspPI	GGNCC	2 cut(s)	1019, 1020
PsuI	RGATCY	1 cut(s)	28
RsaI	GTAC	6 cut(s)	72, 359, 487, 507, 716, 1040
RsaNI	GTAC	6 cut(s)	71, 358, 486, 506, 715, 1039
RseI	CAYNNNNRTG	3 cut(s)	563, 644, 749
SaqAI	TTAA	3 cut(s)	531, 680, 806
SatI	GCNGC	1 cut(s)	397
Sau3AI	GATC	4 cut(s)	28, 256, 733, 773
Sau96I	GGNCC	2 cut(s)	1019, 1020
ScaI	AGTACT	1 cut(s)	1040
SchI	GAGTC	1 cut(s)	892
ScrFI	CCNGG	2 cut(s)	219, 494
SduI	GDGCHC	1 cut(s)	1023
SfaNI	GCATC	4 cut(s)	409, 588, 753, 775
SfcI	CTRYAG	1 cut(s)	60
SmiMI	CAYNNNNRTG	3 cut(s)	563, 644, 749
SmlI	CTYRAG	2 cut(s)	92, 266
SmoI	CTYRAG	2 cut(s)	92, 266
SnaBI	TACGTA	2 cut(s)	316, 415
Sse9I	AATT	7 cut(s)	101, 363, 520, 697, 759, 1013, 1060
SsiI	CCGC	3 cut(s)	515, 582, 1074
SspMI	CTAG	1 cut(s)	423
StyD4I	CCNGG	2 cut(s)	217, 492
TaaI	ACNGT	3 cut(s)	190, 731, 769
TaiI	ACGT	5 cut(s)	150, 184, 318, 417, 827
TaqI	TCGA	3 cut(s)	459, 726, 792
TasI	AATT	7 cut(s)	101, 363, 520, 697, 759, 1013, 1060
TatI	WGTACW	2 cut(s)	70, 1038
TfiI	GAWTC	3 cut(s)	541, 940, 994
Tru1I	TTAA	3 cut(s)	531, 680, 806
Tru9I	TTAA	3 cut(s)	531, 680, 806
TscAI	CASTG	2 cut(s)	195, 717
TseFI	GTSAC	2 cut(s)	148, 845
TseI	GCWGC	1 cut(s)	396
Tsp45I	GTSAC	2 cut(s)	148, 845
TspDTI	ATGAA	6 cut(s)	240, 324, 489, 547, 551, 986
TspGWI	ACGGA	2 cut(s)	233, 995
TspRI	CASTG	2 cut(s)	195, 717
XapI	RAATTY	3 cut(s)	363, 520, 1013
XcmI	CCANNNNNNNNNTGG	1 cut(s)	559
XspI	CTAG	1 cut(s)	423
ZrmI	AGTACT	1 cut(s)	1040

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.