Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000388.1

Orthogroup ID

OG0004536

Physical Location & Seq

Genomic Coordinates Forward (+)

246837 .. 247445

Gene Structure 609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000388.1_g000047.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

atgtcatccatcgccttctctttcaatcaagaatgttccaacaaatttcaagttgaagacctctctctcgaggagatagcaataaggattcaagattataaaaaggatatatcagaaggtaaggaactaaatttgatttcaagaggtcgttccaatgtgattttttccagcaatcgtattttactaaaggatcaaggtattcgttataaaccaagggatcgtaagaaagacatcatccttcgtcctcttgacattattctcatgtttttcaatggacataagcgctacacactttccagcctatattatatggatacgaagctcttcgaacagcaagctgtatctgacagtgctttggatgacattttttgcatcattggttgcagccgctcgagtctcaacgtgtttgcctctgacagaggttatgtgggaggtgtcctcacttttaggctagatgatcaccaatttgattgtcgtaggatgggaccatatggccaaccaatccttccttttattgatgatcagcttaatgatgtacagactcatggtgcactgttcatattatatgtggagaagcataataaggaaaaactccataatgattattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

TP6A_N

Protein Analysis

202

Amino Acids

23.48

Weight (kDa)

6.52

Isoelectric Point (pI)

47.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004536)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43731 FvH4_3g43753
rosa_chinensis	RchiOBHm_Chr2g0086091 RchiOBHm_Chr2g0089291 RchiOBHm_Chr2g0089851 RchiOBHm_Chr5g0083311
rosa_laevigata	RLG00000015741 RLG00000016061 RLG00000017209
rosa_multiflora	Rmu_co8293021.1_g000001 Rmu_co8360049.1_g000001 Rmu_sc0000388.1_g000047 Rmu_sc0002384.1_g000009 Rmu_sc0003382.1_g000021 Rmu_sc0017765.1_g000002 Rmu_ssc0000355.1_g000016
rosa_roxburghii	Rroxscaffold_2G00140180 Rroxscaffold_2G00151540
rosa_rugosa	Rorug01G0465600 Rorug01G0488800 Rorug02G0003700
rosa_samantha	Rh2AG015000 Rh2AG045100 Rh2AG048900 Rh2BG047800 Rh2CG016000 Rh2CG016100 Rh2CG045000 Rh2CG049900 Rh5BG561000 Rh5CG583600
rosa_wichuraiana	Rw2G001320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	99, 207
AccBSI	CCGCTC	1 cut(s)	390
AciI	CCGC	1 cut(s)	388
AclWI	GGATC	2 cut(s)	198, 225
AcoI	YGGCCR	1 cut(s)	493
AcsI	RAATTY	2 cut(s)	44, 130
AfaI	GTAC	1 cut(s)	537
AfeI	AGCGCT	1 cut(s)	284
AflIII	ACRYGT	1 cut(s)	402
AgsI	TTSAA	6 cut(s)	25, 50, 56, 92, 141, 271
AjuI	GAANNNNNNNTTGG	2 cut(s)	489, 521
AluBI	AGCT	3 cut(s)	322, 338, 526
AluI	AGCT	3 cut(s)	322, 338, 526
Alw21I	GWGCWC	1 cut(s)	553
Alw26I	GTCTC	1 cut(s)	401
Alw44I	GTGCAC	1 cut(s)	549
AlwI	GGATC	2 cut(s)	198, 225
Ama87I	CYCGRG	2 cut(s)	68, 391
Aor51HI	AGCGCT	1 cut(s)	284
AoxI	GGCC	1 cut(s)	493
ApaLI	GTGCAC	1 cut(s)	549
ApeKI	GCWGC	1 cut(s)	384
ApoI	RAATTY	2 cut(s)	44, 130
Asp700I	GAANNNNTTC	1 cut(s)	323
AspLEI	GCGC	1 cut(s)	285
AspS9I	GGNCC	1 cut(s)	485
AsuHPI	GGTGA	1 cut(s)	452
AsuII	TTCGAA	1 cut(s)	327
AvaI	CYCGRG	2 cut(s)	68, 391
AvaII	GGWCC	1 cut(s)	485
BaeGI	GKGCMC	1 cut(s)	553
BalI	TGGCCA	1 cut(s)	495
BbsI	GAAGAC	1 cut(s)	63
Bbv12I	GWGCWC	1 cut(s)	553
BbvI	GCAGC	1 cut(s)	396
BccI	CCATC	2 cut(s)	17, 475
BciVI	GTATCC	1 cut(s)	307
BclI	TGATCA	2 cut(s)	457, 520
BcoDI	GTCTC	1 cut(s)	401
BfaI	CTAG	1 cut(s)	452
BfoI	RGCGCY	1 cut(s)	286
BfuI	GTATCC	1 cut(s)	307
BisI	GCNGC	2 cut(s)	385, 388
BlsI	GCNGC	2 cut(s)	386, 389
Bme18I	GGWCC	1 cut(s)	485
BmeT110I	CYCGRG	2 cut(s)	68, 391
BmgT120I	GGNCC	1 cut(s)	485
BmiI	GGNNCC	1 cut(s)	486
BmsI	GCATC	1 cut(s)	381
BpiI	GAAGAC	1 cut(s)	63
BplI	GAGNNNNNCTC	2 cut(s)	423, 455
Bpu14I	TTCGAA	1 cut(s)	327
BsaJI	CCNNGG	1 cut(s)	212
BseDI	CCNNGG	1 cut(s)	212
BseGI	GGATG	4 cut(s)	5, 234, 364, 486
BseRI	GAGGAG	1 cut(s)	86
BseSI	GKGCMC	1 cut(s)	553
BseXI	GCAGC	1 cut(s)	396
BshFI	GGCC	1 cut(s)	495
BsiHKAI	GWGCWC	1 cut(s)	553
BsiHKCI	CYCGRG	2 cut(s)	68, 391
BslFI	GGGAC	1 cut(s)	498
BsmAI	GTCTC	1 cut(s)	401
BsmFI	GGGAC	1 cut(s)	498
BsnI	GGCC	1 cut(s)	495
BsoBI	CYCGRG	2 cut(s)	68, 391
Bsp119I	TTCGAA	1 cut(s)	327
Bsp1286I	GDGCHC	1 cut(s)	553
Bsp1407I	TGTACA	1 cut(s)	535
Bsp143I	GATC	4 cut(s)	190, 217, 457, 520
BspACI	CCGC	1 cut(s)	388
BspANI	GGCC	1 cut(s)	495
BspLI	GGNNCC	1 cut(s)	486
BspPI	GGATC	2 cut(s)	198, 225
BspQI	GCTCTTC	1 cut(s)	329
BspT104I	TTCGAA	1 cut(s)	327
BsrBI	CCGCTC	1 cut(s)	390
BsrGI	TGTACA	1 cut(s)	535
BssECI	CCNNGG	1 cut(s)	212
BssMI	GATC	4 cut(s)	190, 217, 457, 520
BssT1I	CCWWGG	1 cut(s)	212
Bst4CI	ACNGT	2 cut(s)	350, 555
Bst6I	CTCTTC	1 cut(s)	329
BstAUI	TGTACA	1 cut(s)	535
BstBI	TTCGAA	1 cut(s)	327
BstC8I	GCNNGC	1 cut(s)	336
BstF5I	GGATG	4 cut(s)	5, 234, 364, 486
BstH2I	RGCGCY	1 cut(s)	286
BstHHI	GCGC	1 cut(s)	285
BstKTI	GATC	4 cut(s)	193, 220, 460, 523
BstMAI	GTCTC	1 cut(s)	401
BstMBI	GATC	4 cut(s)	190, 217, 457, 520
BstSLI	GKGCMC	1 cut(s)	553
BstV1I	GCAGC	1 cut(s)	396
BstV2I	GAAGAC	1 cut(s)	63
BsuI	GTATCC	1 cut(s)	307
BsuRI	GGCC	1 cut(s)	495
BtsCI	GGATG	4 cut(s)	5, 234, 364, 486
BtsIMutI	CAGTG	2 cut(s)	355, 551
Cac8I	GCNNGC	1 cut(s)	336
CfoI	GCGC	1 cut(s)	285
Cfr13I	GGNCC	1 cut(s)	485
Csp6I	GTAC	1 cut(s)	536
CviAII	CATG	2 cut(s)	262, 545
CviJI	RGCY	7 cut(s)	300, 322, 338, 387, 451, 495, 526
CviKI_1	RGCY	7 cut(s)	300, 322, 338, 387, 451, 495, 526
CviQI	GTAC	1 cut(s)	536
DpnI	GATC	4 cut(s)	192, 219, 459, 522
DpnII	GATC	4 cut(s)	190, 217, 457, 520
EaeI	YGGCCR	1 cut(s)	493
Eam1104I	CTCTTC	1 cut(s)	329
EarI	CTCTTC	1 cut(s)	329
Eco130I	CCWWGG	1 cut(s)	212
Eco47I	GGWCC	1 cut(s)	485
Eco47III	AGCGCT	1 cut(s)	284
Eco88I	CYCGRG	2 cut(s)	68, 391
EcoT14I	CCWWGG	1 cut(s)	212
ErhI	CCWWGG	1 cut(s)	212
FaeI	CATG	2 cut(s)	265, 548
FaqI	GGGAC	1 cut(s)	498
FatI	CATG	2 cut(s)	261, 544
FauNDI	CATATG	1 cut(s)	490
FbaI	TGATCA	2 cut(s)	457, 520
Fnu4HI	GCNGC	2 cut(s)	385, 388
FokI	GGATG	3 cut(s)	221, 371, 493
Fsp4HI	GCNGC	2 cut(s)	385, 388
FspBI	CTAG	1 cut(s)	452
GlaI	GCGC	1 cut(s)	284
GluI	GCNGC	2 cut(s)	385, 388
HaeII	RGCGCY	1 cut(s)	286
HaeIII	GGCC	1 cut(s)	495
HhaI	GCGC	1 cut(s)	285
Hin1II	CATG	2 cut(s)	265, 548
Hin6I	GCGC	1 cut(s)	283
HinP1I	GCGC	1 cut(s)	283
HinfI	GANTC	3 cut(s)	88, 394, 541
HphI	GGTGA	1 cut(s)	452
Hpy166II	GTNNAC	1 cut(s)	551
Hpy188I	TCNGA	3 cut(s)	115, 346, 415
Hpy188III	TCNNGA	5 cut(s)	29, 68, 92, 141, 248
Hpy8I	GTNNAC	1 cut(s)	551
HpyAV	CCTTC	4 cut(s)	25, 110, 248, 515
HpyCH4III	ACNGT	2 cut(s)	350, 555
HpyCH4IV	ACGT	1 cut(s)	402
HpyCH4V	TGCA	3 cut(s)	372, 384, 551
HpySE526I	ACGT	1 cut(s)	402
Hsp92II	CATG	2 cut(s)	265, 548
HspAI	GCGC	1 cut(s)	283
Ksp22I	TGATCA	2 cut(s)	457, 520
Kzo9I	GATC	4 cut(s)	190, 217, 457, 520
LguI	GCTCTTC	1 cut(s)	329
LpnPI	CCDG	2 cut(s)	181, 310
Lsp1109I	GCAGC	1 cut(s)	396
LweI	GCATC	1 cut(s)	381
MaeI	CTAG	1 cut(s)	452
MaeII	ACGT	1 cut(s)	402
MalI	GATC	4 cut(s)	192, 219, 459, 522
MbiI	CCGCTC	1 cut(s)	390
MboI	GATC	4 cut(s)	190, 217, 457, 520
MboII	GAAGA	2 cut(s)	68, 316
MhlI	GDGCHC	1 cut(s)	553
MlsI	TGGCCA	1 cut(s)	495
MluCI	AATT	3 cut(s)	44, 130, 464
MluNI	TGGCCA	1 cut(s)	495
MlyI	GAGTC	2 cut(s)	403, 535
MmeI	TCCRAC	1 cut(s)	63
MnlI	CCTC	8 cut(s)	64, 71, 137, 255, 413, 421, 425, 449
Mox20I	TGGCCA	1 cut(s)	495
MroXI	GAANNNNTTC	1 cut(s)	323
MscI	TGGCCA	1 cut(s)	495
MseI	TTAA	1 cut(s)	528
Msp20I	TGGCCA	1 cut(s)	495
NdeI	CATATG	1 cut(s)	490
NdeII	GATC	4 cut(s)	190, 217, 457, 520
NlaIII	CATG	2 cut(s)	265, 548
NlaIV	GGNNCC	1 cut(s)	486
NspV	TTCGAA	1 cut(s)	327
PaeR7I	CTCGAG	2 cut(s)	68, 391
PciSI	GCTCTTC	1 cut(s)	329
PdmI	GAANNNNTTC	1 cut(s)	323
PfeI	GAWTC	1 cut(s)	88
PkrI	GCNGC	2 cut(s)	386, 389
PleI	GAGTC	2 cut(s)	402, 535
PpsI	GAGTC	2 cut(s)	402, 535
PsiI	TTATAA	2 cut(s)	99, 207
PspN4I	GGNNCC	1 cut(s)	486
PspPI	GGNCC	1 cut(s)	485
PspXI	VCTCGAGB	1 cut(s)	391
RsaI	GTAC	1 cut(s)	537
RsaNI	GTAC	1 cut(s)	536
SapI	GCTCTTC	1 cut(s)	329
SaqAI	TTAA	1 cut(s)	528
SatI	GCNGC	2 cut(s)	385, 388
Sau3AI	GATC	4 cut(s)	190, 217, 457, 520
Sau96I	GGNCC	1 cut(s)	485
SchI	GAGTC	2 cut(s)	403, 535
SduI	GDGCHC	1 cut(s)	553
SfaNI	GCATC	1 cut(s)	381
Sfr274I	CTCGAG	2 cut(s)	68, 391
SfuI	TTCGAA	1 cut(s)	327
SinI	GGWCC	1 cut(s)	485
SlaI	CTCGAG	2 cut(s)	68, 391
SmlI	CTYRAG	2 cut(s)	68, 391
SmoI	CTYRAG	2 cut(s)	68, 391
Sse9I	AATT	3 cut(s)	44, 130, 464
SsiI	CCGC	1 cut(s)	388
SspMI	CTAG	1 cut(s)	452
StyI	CCWWGG	1 cut(s)	212
TaaI	ACNGT	2 cut(s)	350, 555
TaiI	ACGT	1 cut(s)	405
TaqI	TCGA	3 cut(s)	69, 327, 392
TasI	AATT	3 cut(s)	44, 130, 464
TatI	WGTACW	1 cut(s)	535
TauI	GCSGC	1 cut(s)	390
TfiI	GAWTC	1 cut(s)	88
Tru1I	TTAA	1 cut(s)	528
Tru9I	TTAA	1 cut(s)	528
TscAI	CASTG	2 cut(s)	355, 558
TseI	GCWGC	1 cut(s)	384
TspDTI	ATGAA	1 cut(s)	547
TspRI	CASTG	2 cut(s)	355, 558
VneI	GTGCAC	1 cut(s)	549
VpaK11BI	GGWCC	1 cut(s)	485
XapI	RAATTY	2 cut(s)	44, 130
XhoI	CTCGAG	2 cut(s)	68, 391
XmnI	GAANNNNTTC	1 cut(s)	323
XspI	CTAG	1 cut(s)	452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.