Rh2BG047800

Component of the DNA topoisomerase VI involved in chromatin organization and progression of endoreduplication cycles. Relaxes both positive and negative superturns and exhibits a strong decatenase activity

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Reverse (-)
3393578 .. 3394857
1280 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG047800.1

Sequence Viewer

Length: 1185 bp
ATGGCTTCTTGTTTTGATGAACGCAAACCAATCTGGCCAATACCAAAAAGAGAAGAGGTCCGCCTATTAATGAACCTACACAGCGCAATGTACACCAGACTGATGGCTTATGAGAACGCTCTAATAGAAGATCCCAATCGTTACGAGGTCAAAGACCTCTCTATAGAGGAAGTACAGGAGAAACTTGAAGCTCTCAAGAAAAAATTAGATGATGGGAGCTTTAGTTGCATTTCACGAGACAAGTCCAACGTGACCTATGGTGAGTGTAGCGATGGCGTCAAACGTCTTACAGTGAAGGATATAAATAAACGCTCTAAACCAGGAGATGAAAAAAGAAAAAATATCCGTTTGATGGTTGATCTTATTCTCAAGTTCTTCCAAGCAAACAAGCGAGAAACACATCGTGGGGTGTTTTACGTAGGGAATAATACCAGTTCATTGTTCCGACAAAAAGATGAGTACGAAATTCTTGATGACATCTGTTGTACTATAAGGTGCAGCAGTTCAAGTCTCTACGTAGATGCTAGTGTAAGAGGCGTTGTTGCAGGTCTGCTTTCTTTCGAGCTTGGAGGGCATGAAACCTTTTGTACGAGCCGGGACGATGGGGTACCCATCCCGCTGAATTCAGATATTAAAATGAAGAATCGTGGAGCCAAGTTCATATTGGTGGTGGAAAATAAATCCGCTTTCAATACATTGATGCAAGATAAGTTTTACAATGATTATCCATGTATAATCATCACCGGAATGGGAATGCCGGAGGTGGCGACCAGAAGATTTTTAAAGCTATTGTCGGACAATTTTGGGCTTCCAGTGTATGGCCTTTTCGACTGTGATCCAGAAGGCATCAAAATGTTTACAATTTATACTGTTGGATCATATGAGGATGCCTTCGATAGTGTAAACTTAACTTGGCCGTATATGACGTGGTTGGGTGTTTGGCCAAGTGACCTATGTGCGCTTGATATACCCTGCAAGGATTTGAGTCCGAGTGAGATTGCATTGGTAGATTATCTTTTGAGAGAAGATTTTGTGAAAGAGAATCCGAGGTTGGTTGAGGAGCTGGAACATATGAAAATAACGGAGAAAAAAGCGAATCTTGAAGCTTTGAAGGAATTTGGGCCCACTTGTTTGTCTAAGTACTATTTGCCATATAAGTTGAATTATCTTTTGACCGCGCCGTGA

Protein Analysis

394

Amino Acids

45.2

Weight (kDa)

5.55

Isoelectric Point (pI)

42.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TOP6A-Spo11_Toprim PF21180 220 - 387 1.7e-47 Topoisomerase 6 subunit A/Spo11, Toprim domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 536
Acc65I GGTACC 1 cut(s) 607
AccB1I GGYRCC 1 cut(s) 607
AccB7I CCANNNNNTGG 1 cut(s) 818
AccII CGCG 1 cut(s) 1178
AciI CCGC 4 cut(s) 61, 617, 684, 1176
AclWI GGATC 3 cut(s) 125, 830, 883
AcoI YGGCCR 3 cut(s) 35, 914, 941
AcsI RAATTY 3 cut(s) 465, 622, 1115
AcyI GRCGYC 1 cut(s) 276
AdeI CACNNNGTG 1 cut(s) 404
AfaI GTAC 7 cut(s) 92, 174, 461, 487, 589, 609, 1142
AfiI CCNNNNNNNGG 2 cut(s) 352, 818
AgsI TTSAA 6 cut(s) 188, 507, 691, 1103, 1111, 1162
AjiI CACGTC 1 cut(s) 927
AjnI CCWGG 1 cut(s) 319
AjuI GAANNNNNNNTTGG 2 cut(s) 1034, 1066
AluBI AGCT 6 cut(s) 191, 219, 565, 787, 1063, 1106
AluI AGCT 6 cut(s) 191, 219, 565, 787, 1063, 1106
Alw26I GTCTC 2 cut(s) 231, 515
AlwI GGATC 3 cut(s) 125, 830, 883
AoxI GGCC 5 cut(s) 35, 820, 914, 941, 1121
ApaI GGGCCC 1 cut(s) 1125
ApeKI GCWGC 1 cut(s) 498
ApoI RAATTY 3 cut(s) 465, 622, 1115
AseI ATTAAT 1 cut(s) 68
Asp718I GGTACC 1 cut(s) 607
AspLEI GCGC 3 cut(s) 86, 961, 1180
AspS9I GGNCC 3 cut(s) 58, 1121, 1122
AsuC2I CCSGG 1 cut(s) 596
AsuHPI GGTGA 2 cut(s) 272, 733
AvaII GGWCC 1 cut(s) 58
BaeGI GKGCMC 1 cut(s) 1125
BalI TGGCCA 2 cut(s) 37, 943
BanI GGYRCC 1 cut(s) 607
BanII GRGCYC 1 cut(s) 1125
BauI CACGAG 1 cut(s) 234
BbvI GCAGC 1 cut(s) 510
BccI CCATC 6 cut(s) 97, 206, 266, 346, 596, 620
BceAI ACGGC 2 cut(s) 901, 1165
BciT130I CCWGG 1 cut(s) 321
BcnI CCSGG 1 cut(s) 596
BcoDI GTCTC 2 cut(s) 231, 515
BfaI CTAG 1 cut(s) 525
BfmI CTRYAG 1 cut(s) 162
BfuAI ACCTGC 1 cut(s) 536
BisI GCNGC 1 cut(s) 499
BlsI GCNGC 1 cut(s) 500
BmcAI AGTACT 1 cut(s) 1142
Bme1390I CCNGG 2 cut(s) 321, 596
Bme18I GGWCC 1 cut(s) 58
BmgBI CACGTC 1 cut(s) 927
BmgT120I GGNCC 3 cut(s) 58, 1121, 1122
BmiI GGNNCC 3 cut(s) 609, 652, 1123
BmrFI CCNGG 2 cut(s) 321, 596
BmsI GCATC 4 cut(s) 511, 690, 855, 877
BpuEI CTTGAG 2 cut(s) 179, 353
BpuMI CCSGG 1 cut(s) 596
BsaAI YACGTR 2 cut(s) 418, 517
BsaBI GATNNNNATC 1 cut(s) 135
BsaHI GRCGYC 1 cut(s) 276
BsaJI CCNNGG 1 cut(s) 1046
BsaWI WCCGGW 1 cut(s) 743
BsaXI ACNNNNNCTCC 2 cut(s) 208, 238
Bsc4I CCNNNNNNNGG 2 cut(s) 352, 818
Bse1I ACTGG 2 cut(s) 432, 812
Bse3DI GCAATG 1 cut(s) 93
Bse8I GATNNNNATC 1 cut(s) 135
BseBI CCWGG 1 cut(s) 321
BseDI CCNNGG 1 cut(s) 1046
BseGI GGATG 2 cut(s) 612, 892
BseJI GATNNNNATC 1 cut(s) 135
BseLI CCNNNNNNNGG 2 cut(s) 352, 818
BseMI GCAATG 1 cut(s) 93
BseNI ACTGG 2 cut(s) 432, 812
BseRI GAGGAG 1 cut(s) 1073
BseSI GKGCMC 1 cut(s) 1125
BseXI GCAGC 1 cut(s) 510
BsgI GTGCAG 1 cut(s) 517
Bsh1236I CGCG 1 cut(s) 1178
BshFI GGCC 5 cut(s) 37, 822, 916, 943, 1123
BshNI GGYRCC 1 cut(s) 607
BsiSI CCGG 3 cut(s) 595, 744, 758
BslFI GGGAC 1 cut(s) 611
BslI CCNNNNNNNGG 2 cut(s) 352, 818
BsmAI GTCTC 2 cut(s) 231, 515
BsmFI GGGAC 1 cut(s) 611
BsmI GAATGC 1 cut(s) 759
BsnI GGCC 5 cut(s) 37, 822, 916, 943, 1123
Bsp120I GGGCCC 1 cut(s) 1121
Bsp1286I GDGCHC 1 cut(s) 1125
Bsp1407I TGTACA 1 cut(s) 90
Bsp143I GATC 4 cut(s) 130, 358, 835, 875
BspACI CCGC 4 cut(s) 61, 617, 684, 1176
BspANI GGCC 5 cut(s) 37, 822, 916, 943, 1123
BspFNI CGCG 1 cut(s) 1178
BspLI GGNNCC 3 cut(s) 609, 652, 1123
BspMI ACCTGC 1 cut(s) 536
BspPI GGATC 3 cut(s) 125, 830, 883
BspT107I GGYRCC 1 cut(s) 607
BsrDI GCAATG 1 cut(s) 93
BsrGI TGTACA 1 cut(s) 90
BsrI ACTGG 2 cut(s) 432, 812
BssECI CCNNGG 1 cut(s) 1046
BssMI GATC 4 cut(s) 130, 358, 835, 875
BssNI GRCGYC 1 cut(s) 276
BssSI CACGAG 1 cut(s) 234
Bst2BI CACGAG 1 cut(s) 234
Bst2UI CCWGG 1 cut(s) 321
Bst4CI ACNGT 3 cut(s) 292, 833, 871
Bst6I CTCTTC 1 cut(s) 48
BstACI GRCGYC 1 cut(s) 276
BstAUI TGTACA 1 cut(s) 90
BstBAI YACGTR 2 cut(s) 418, 517
BstDEI CTNAG 1 cut(s) 1137
BstF5I GGATG 2 cut(s) 612, 892
BstFNI CGCG 1 cut(s) 1178
BstHHI GCGC 3 cut(s) 86, 961, 1180
BstKTI GATC 4 cut(s) 133, 361, 838, 878
BstMAI GTCTC 2 cut(s) 231, 515
BstMBI GATC 4 cut(s) 130, 358, 835, 875
BstMWI GCNNNNNNNGC 2 cut(s) 225, 571
BstNI CCWGG 1 cut(s) 321
BstSCI CCNGG 2 cut(s) 319, 594
BstSFI CTRYAG 1 cut(s) 162
BstSLI GKGCMC 1 cut(s) 1125
BstSNI TACGTA 2 cut(s) 418, 517
BstUI CGCG 1 cut(s) 1178
BstV1I GCAGC 1 cut(s) 510
BstX2I RGATCY 1 cut(s) 130
BstXI CCANNNNNNTGG 1 cut(s) 103
BstYI RGATCY 1 cut(s) 130
BsuRI GGCC 5 cut(s) 37, 822, 916, 943, 1123
BtgZI GCGATG 1 cut(s) 285
BtrI CACGTC 1 cut(s) 927
BtsCI GGATG 2 cut(s) 612, 892
BtsIMutI CAGTG 2 cut(s) 297, 819
BveI ACCTGC 1 cut(s) 536
CfoI GCGC 3 cut(s) 86, 961, 1180
Cfr13I GGNCC 3 cut(s) 58, 1121, 1122
CseI GACGC 1 cut(s) 265
Csp6I GTAC 7 cut(s) 91, 173, 460, 486, 588, 608, 1141
CviAII CATG 2 cut(s) 575, 729
CviQI GTAC 7 cut(s) 91, 173, 460, 486, 588, 608, 1141
DdeI CTNAG 1 cut(s) 1137
DpnI GATC 4 cut(s) 132, 360, 837, 877
DpnII GATC 4 cut(s) 130, 358, 835, 875
DraI TTTAAA 1 cut(s) 783
DraIII CACNNNGTG 1 cut(s) 404
EaeI YGGCCR 3 cut(s) 35, 914, 941
Eam1104I CTCTTC 1 cut(s) 48
EarI CTCTTC 1 cut(s) 48
EciI GGCGGA 1 cut(s) 50
Eco105I TACGTA 2 cut(s) 418, 517
Eco24I GRGCYC 1 cut(s) 1125
Eco47I GGWCC 1 cut(s) 58
EcoRI GAATTC 1 cut(s) 622
EcoRII CCWGG 1 cut(s) 319
EcoT38I GRGCYC 1 cut(s) 1125
FaeI CATG 2 cut(s) 578, 732
FalI AAGNNNNNCTT 2 cut(s) 1083, 1115
FaqI GGGAC 1 cut(s) 611
FatI CATG 2 cut(s) 574, 728
FauI CCCGC 1 cut(s) 624
FauNDI CATATG 2 cut(s) 880, 1071
Fnu4HI GCNGC 1 cut(s) 499
FokI GGATG 2 cut(s) 599, 899
FriOI GRGCYC 1 cut(s) 1125
Fsp4HI GCNGC 1 cut(s) 499
FspBI CTAG 1 cut(s) 525
GlaI GCGC 3 cut(s) 85, 960, 1179
GluI GCNGC 1 cut(s) 499
HaeIII GGCC 5 cut(s) 37, 822, 916, 943, 1123
HapII CCGG 3 cut(s) 595, 744, 758
HgaI GACGC 1 cut(s) 265
HhaI GCGC 3 cut(s) 86, 961, 1180
Hin1I GRCGYC 1 cut(s) 276
Hin1II CATG 2 cut(s) 578, 732
Hin6I GCGC 3 cut(s) 84, 959, 1178
HinP1I GCGC 3 cut(s) 84, 959, 1178
HindIII AAGCTT 1 cut(s) 1104
HinfI GANTC 4 cut(s) 643, 985, 1042, 1096
HpaII CCGG 3 cut(s) 595, 744, 758
HphI GGTGA 2 cut(s) 272, 733
Hpy166II GTNNAC 3 cut(s) 93, 858, 904
Hpy188I TCNGA 5 cut(s) 446, 628, 796, 990, 1047
Hpy188III TCNNGA 5 cut(s) 196, 234, 470, 839, 1100
Hpy8I GTNNAC 3 cut(s) 93, 858, 904
HpyAV CCTTC 4 cut(s) 289, 836, 901, 1105
HpyCH4III ACNGT 3 cut(s) 292, 833, 871
HpyCH4IV ACGT 5 cut(s) 249, 283, 417, 516, 926
HpyCH4V TGCA 6 cut(s) 228, 498, 545, 703, 975, 1001
HpyF10VI GCNNNNNNNGC 2 cut(s) 225, 571
HpyF3I CTNAG 1 cut(s) 1137
HpySE526I ACGT 5 cut(s) 249, 283, 417, 516, 926
Hsp92I GRCGYC 1 cut(s) 276
Hsp92II CATG 2 cut(s) 578, 732
HspAI GCGC 3 cut(s) 84, 959, 1178
KpnI GGTACC 1 cut(s) 611
Kzo9I GATC 4 cut(s) 130, 358, 835, 875
LmnI GCTCC 3 cut(s) 216, 650, 1060
Lsp1109I GCAGC 1 cut(s) 510
LweI GCATC 4 cut(s) 511, 690, 855, 877
MaeI CTAG 1 cut(s) 525
MaeII ACGT 5 cut(s) 249, 283, 417, 516, 926
MaeIII GTNAC 3 cut(s) 140, 250, 947
MalI GATC 4 cut(s) 132, 360, 837, 877
MboI GATC 4 cut(s) 130, 358, 835, 875
MboII GAAGA 6 cut(s) 65, 140, 367, 652, 786, 1037
MflI RGATCY 1 cut(s) 130
MhlI GDGCHC 1 cut(s) 1125
MlsI TGGCCA 2 cut(s) 37, 943
MluCI AATT 7 cut(s) 203, 465, 622, 799, 861, 1115, 1162
MluNI TGGCCA 2 cut(s) 37, 943
MlyI GAGTC 1 cut(s) 994
MmeI TCCRAC 4 cut(s) 270, 469, 774, 853
Mox20I TGGCCA 2 cut(s) 37, 943
MscI TGGCCA 2 cut(s) 37, 943
MseI TTAA 4 cut(s) 68, 633, 782, 908
MslI CAYNNNNRTG 3 cut(s) 665, 746, 851
Msp20I TGGCCA 2 cut(s) 37, 943
MspA1I CMGCKG 1 cut(s) 619
MspI CCGG 3 cut(s) 595, 744, 758
MspR9I CCNGG 2 cut(s) 321, 596
Mva1269I GAATGC 1 cut(s) 759
MvaI CCWGG 1 cut(s) 321
MvnI CGCG 1 cut(s) 1178
MwoI GCNNNNNNNGC 2 cut(s) 225, 571
NciI CCSGG 1 cut(s) 596
NdeI CATATG 2 cut(s) 880, 1071
NdeII GATC 4 cut(s) 130, 358, 835, 875
NlaIII CATG 2 cut(s) 578, 732
NlaIV GGNNCC 3 cut(s) 609, 652, 1123
NmuCI GTSAC 2 cut(s) 250, 947
PctI GAATGC 1 cut(s) 759
PfeI GAWTC 3 cut(s) 643, 1042, 1096
PflMI CCANNNNNTGG 1 cut(s) 818
PkrI GCNGC 1 cut(s) 500
PleI GAGTC 1 cut(s) 993
PpsI GAGTC 1 cut(s) 993
Ppu21I YACGTR 2 cut(s) 418, 517
PshBI ATTAAT 1 cut(s) 68
Psp6I CCWGG 1 cut(s) 319
PspGI CCWGG 1 cut(s) 319
PspN4I GGNNCC 3 cut(s) 609, 652, 1123
PspOMI GGGCCC 1 cut(s) 1121
PspPI GGNCC 3 cut(s) 58, 1121, 1122
PsuI RGATCY 1 cut(s) 130
RsaI GTAC 7 cut(s) 92, 174, 461, 487, 589, 609, 1142
RsaNI GTAC 7 cut(s) 91, 173, 460, 486, 588, 608, 1141
RseI CAYNNNNRTG 3 cut(s) 665, 746, 851
SaqAI TTAA 4 cut(s) 68, 633, 782, 908
SatI GCNGC 1 cut(s) 499
Sau3AI GATC 4 cut(s) 130, 358, 835, 875
Sau96I GGNCC 3 cut(s) 58, 1121, 1122
ScaI AGTACT 1 cut(s) 1142
SchI GAGTC 1 cut(s) 994
ScrFI CCNGG 2 cut(s) 321, 596
SduI GDGCHC 1 cut(s) 1125
SfaNI GCATC 4 cut(s) 511, 690, 855, 877
SfcI CTRYAG 1 cut(s) 162
SinI GGWCC 1 cut(s) 58
SmiMI CAYNNNNRTG 3 cut(s) 665, 746, 851
SmlI CTYRAG 2 cut(s) 194, 368
SmoI CTYRAG 2 cut(s) 194, 368
SnaBI TACGTA 2 cut(s) 418, 517
Sse9I AATT 7 cut(s) 203, 465, 622, 799, 861, 1115, 1162
SsiI CCGC 4 cut(s) 61, 617, 684, 1176
SspMI CTAG 1 cut(s) 525
StyD4I CCNGG 2 cut(s) 319, 594
TaaI ACNGT 3 cut(s) 292, 833, 871
TaiI ACGT 5 cut(s) 252, 286, 420, 519, 929
TaqI TCGA 3 cut(s) 561, 828, 894
TasI AATT 7 cut(s) 203, 465, 622, 799, 861, 1115, 1162
TatI WGTACW 4 cut(s) 90, 172, 485, 1140
TfiI GAWTC 3 cut(s) 643, 1042, 1096
Tru1I TTAA 4 cut(s) 68, 633, 782, 908
Tru9I TTAA 4 cut(s) 68, 633, 782, 908
TscAI CASTG 2 cut(s) 297, 819
TseFI GTSAC 2 cut(s) 250, 947
TseI GCWGC 1 cut(s) 498
Tsp45I GTSAC 2 cut(s) 250, 947
TspDTI ATGAA 8 cut(s) 33, 86, 342, 426, 591, 649, 653, 1088
TspGWI ACGGA 2 cut(s) 335, 1097
TspRI CASTG 2 cut(s) 297, 819
Van91I CCANNNNNTGG 1 cut(s) 818
VpaK11BI GGWCC 1 cut(s) 58
VspI ATTAAT 1 cut(s) 68
XapI RAATTY 3 cut(s) 465, 622, 1115
XcmI CCANNNNNNNNNTGG 1 cut(s) 661
XspI CTAG 1 cut(s) 525
ZrmI AGTACT 1 cut(s) 1142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.