Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8293021.1

Orthogroup ID

OG0004536

Physical Location & Seq

Genomic Coordinates Reverse (-)

52 .. 648

Gene Structure 597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8293021.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

atgagccgggatgatgggatacccatcccgctgaattcagatattaaaatgaaggatcgtggagccaagttcatattggtggtggaaaagaaatccgctttcaatacattgatgcaagataagttttacaatgattatccatgtataatcatcaccggaatgggaatgccggaggtggcgaccagaagatttttaaagctattgtcggacaattttgggcttccagtgtatggccttttcgactgtgatccagaaggcatcgaaatgtttacaatttatactgttggatcatatgaggaggcctttgatagtgtaaacttaacttggccgtatatgacgtggttgggtgtttggccgagtgacctatgtgcgcttgatataccctgcaaggatttgagtccaagtgagattgcattggtcgattatcttttgagagaagattttgtgaaagagaatccaaggttggttgaggagctggaacatatgaaaataacggagaaaaaagcgaatcttgaagctttgaaggaatttgggcccacttgtttgtccaagtactatttgccatataagttgaattatcttttgaccgcgccgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000706 GO:0000729 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003916 GO:0003918 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0016889 GO:0016894 GO:0017111 GO:0022402 GO:0022414 GO:0030957 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0035825 GO:0042138 GO:0042623 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046983 GO:0048285 GO:0050896 GO:0051321 GO:0051716 GO:0061505 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

TP6A_N

Protein Analysis

198

Amino Acids

22.74

Weight (kDa)

4.71

Isoelectric Point (pI)

37.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004536)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43731 FvH4_3g43753
rosa_chinensis	RchiOBHm_Chr2g0086091 RchiOBHm_Chr2g0089291 RchiOBHm_Chr2g0089851 RchiOBHm_Chr5g0083311
rosa_laevigata	RLG00000015741 RLG00000016061 RLG00000017209
rosa_multiflora	Rmu_co8293021.1_g000001 Rmu_co8360049.1_g000001 Rmu_sc0000388.1_g000047 Rmu_sc0002384.1_g000009 Rmu_sc0003382.1_g000021 Rmu_sc0017765.1_g000002 Rmu_ssc0000355.1_g000016
rosa_roxburghii	Rroxscaffold_2G00140180 Rroxscaffold_2G00151540
rosa_rugosa	Rorug01G0465600 Rorug01G0488800 Rorug02G0003700
rosa_samantha	Rh2AG015000 Rh2AG045100 Rh2AG048900 Rh2BG047800 Rh2CG016000 Rh2CG016100 Rh2CG045000 Rh2CG049900 Rh5BG561000 Rh5CG583600
rosa_wichuraiana	Rw2G001320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	230
AccII	CGCG	1 cut(s)	590
AciI	CCGC	3 cut(s)	29, 96, 588
AclWI	GGATC	3 cut(s)	63, 242, 295
AcoI	YGGCCR	2 cut(s)	326, 353
AcsI	RAATTY	2 cut(s)	34, 527
AfaI	GTAC	1 cut(s)	554
AfiI	CCNNNNNNNGG	1 cut(s)	230
AgsI	TTSAA	4 cut(s)	103, 515, 523, 574
AjiI	CACGTC	1 cut(s)	339
AjuI	GAANNNNNNNTTGG	2 cut(s)	446, 478
AluBI	AGCT	3 cut(s)	199, 475, 518
AluI	AGCT	3 cut(s)	199, 475, 518
AlwI	GGATC	3 cut(s)	63, 242, 295
AoxI	GGCC	5 cut(s)	232, 300, 326, 353, 533
ApaI	GGGCCC	1 cut(s)	537
ApoI	RAATTY	2 cut(s)	34, 527
AspLEI	GCGC	2 cut(s)	373, 592
AspS9I	GGNCC	2 cut(s)	533, 534
AsuC2I	CCSGG	1 cut(s)	8
AsuHPI	GGTGA	1 cut(s)	145
BaeGI	GKGCMC	1 cut(s)	537
BanII	GRGCYC	1 cut(s)	537
BccI	CCATC	2 cut(s)	8, 32
BceAI	ACGGC	2 cut(s)	313, 577
BciVI	GTATCC	1 cut(s)	12
BcnI	CCSGG	1 cut(s)	8
BfuI	GTATCC	1 cut(s)	12
BmcAI	AGTACT	1 cut(s)	554
Bme1390I	CCNGG	1 cut(s)	8
BmgBI	CACGTC	1 cut(s)	339
BmgT120I	GGNCC	2 cut(s)	533, 534
BmiI	GGNNCC	2 cut(s)	64, 535
BmrFI	CCNGG	1 cut(s)	8
BmsI	GCATC	2 cut(s)	102, 267
BpuMI	CCSGG	1 cut(s)	8
BsaBI	GATNNNNATC	1 cut(s)	23
BsaJI	CCNNGG	1 cut(s)	458
BsaWI	WCCGGW	1 cut(s)	155
Bsc4I	CCNNNNNNNGG	1 cut(s)	230
Bse1I	ACTGG	1 cut(s)	224
Bse8I	GATNNNNATC	1 cut(s)	23
BseDI	CCNNGG	1 cut(s)	458
BseGI	GGATG	2 cut(s)	16, 24
BseJI	GATNNNNATC	1 cut(s)	23
BseLI	CCNNNNNNNGG	1 cut(s)	230
BseNI	ACTGG	1 cut(s)	224
BseRI	GAGGAG	2 cut(s)	311, 485
BseSI	GKGCMC	1 cut(s)	537
Bsh1236I	CGCG	1 cut(s)	590
BshFI	GGCC	5 cut(s)	234, 302, 328, 355, 535
BsiSI	CCGG	3 cut(s)	7, 156, 170
BslI	CCNNNNNNNGG	1 cut(s)	230
BsmI	GAATGC	1 cut(s)	171
BsnI	GGCC	5 cut(s)	234, 302, 328, 355, 535
Bsp120I	GGGCCC	1 cut(s)	533
Bsp1286I	GDGCHC	1 cut(s)	537
Bsp143I	GATC	3 cut(s)	55, 247, 287
BspACI	CCGC	3 cut(s)	29, 96, 588
BspANI	GGCC	5 cut(s)	234, 302, 328, 355, 535
BspFNI	CGCG	1 cut(s)	590
BspLI	GGNNCC	2 cut(s)	64, 535
BspPI	GGATC	3 cut(s)	63, 242, 295
BsrI	ACTGG	1 cut(s)	224
BssECI	CCNNGG	1 cut(s)	458
BssMI	GATC	3 cut(s)	55, 247, 287
BssT1I	CCWWGG	1 cut(s)	458
Bst4CI	ACNGT	2 cut(s)	245, 283
BstF5I	GGATG	2 cut(s)	16, 24
BstFNI	CGCG	1 cut(s)	590
BstHHI	GCGC	2 cut(s)	373, 592
BstKTI	GATC	3 cut(s)	58, 250, 290
BstMBI	GATC	3 cut(s)	55, 247, 287
BstSCI	CCNGG	1 cut(s)	6
BstSLI	GKGCMC	1 cut(s)	537
BstUI	CGCG	1 cut(s)	590
BsuI	GTATCC	1 cut(s)	12
BsuRI	GGCC	5 cut(s)	234, 302, 328, 355, 535
BtrI	CACGTC	1 cut(s)	339
BtsCI	GGATG	2 cut(s)	16, 24
BtsIMutI	CAGTG	1 cut(s)	231
CfoI	GCGC	2 cut(s)	373, 592
Cfr13I	GGNCC	2 cut(s)	533, 534
Csp6I	GTAC	1 cut(s)	553
CviAII	CATG	1 cut(s)	141
CviQI	GTAC	1 cut(s)	553
DpnI	GATC	3 cut(s)	57, 249, 289
DpnII	GATC	3 cut(s)	55, 247, 287
DraI	TTTAAA	1 cut(s)	195
EaeI	YGGCCR	2 cut(s)	326, 353
Eco130I	CCWWGG	1 cut(s)	458
Eco147I	AGGCCT	1 cut(s)	302
Eco24I	GRGCYC	1 cut(s)	537
EcoRI	GAATTC	1 cut(s)	34
EcoT14I	CCWWGG	1 cut(s)	458
EcoT38I	GRGCYC	1 cut(s)	537
ErhI	CCWWGG	1 cut(s)	458
FaeI	CATG	1 cut(s)	144
FalI	AAGNNNNNCTT	2 cut(s)	495, 527
FatI	CATG	1 cut(s)	140
FauI	CCCGC	1 cut(s)	36
FauNDI	CATATG	2 cut(s)	292, 483
FokI	GGATG	2 cut(s)	11, 23
FriOI	GRGCYC	1 cut(s)	537
GlaI	GCGC	2 cut(s)	372, 591
HaeIII	GGCC	5 cut(s)	234, 302, 328, 355, 535
HapII	CCGG	3 cut(s)	7, 156, 170
HhaI	GCGC	2 cut(s)	373, 592
Hin1II	CATG	1 cut(s)	144
Hin6I	GCGC	2 cut(s)	371, 590
HinP1I	GCGC	2 cut(s)	371, 590
HindIII	AAGCTT	1 cut(s)	516
HinfI	GANTC	3 cut(s)	397, 454, 508
HpaII	CCGG	3 cut(s)	7, 156, 170
HphI	GGTGA	1 cut(s)	145
Hpy166II	GTNNAC	2 cut(s)	270, 316
Hpy188I	TCNGA	2 cut(s)	40, 208
Hpy188III	TCNNGA	2 cut(s)	251, 512
Hpy8I	GTNNAC	2 cut(s)	270, 316
HpyAV	CCTTC	3 cut(s)	46, 248, 517
HpyCH4III	ACNGT	2 cut(s)	245, 283
HpyCH4IV	ACGT	1 cut(s)	338
HpyCH4V	TGCA	3 cut(s)	115, 387, 413
HpySE526I	ACGT	1 cut(s)	338
Hsp92II	CATG	1 cut(s)	144
HspAI	GCGC	2 cut(s)	371, 590
Kzo9I	GATC	3 cut(s)	55, 247, 287
LmnI	GCTCC	2 cut(s)	62, 472
LpnPI	CCDG	8 cut(s)	20, 169, 183, 196, 237, 264, 397, 461
LweI	GCATC	2 cut(s)	102, 267
MaeII	ACGT	1 cut(s)	338
MaeIII	GTNAC	1 cut(s)	359
MalI	GATC	3 cut(s)	57, 249, 289
MboI	GATC	3 cut(s)	55, 247, 287
MboII	GAAGA	2 cut(s)	198, 449
MhlI	GDGCHC	1 cut(s)	537
MluCI	AATT	5 cut(s)	34, 211, 273, 527, 574
MlyI	GAGTC	1 cut(s)	406
MmeI	TCCRAC	2 cut(s)	186, 265
MnlI	CCTC	4 cut(s)	166, 289, 292, 463
MseI	TTAA	3 cut(s)	45, 194, 320
MslI	CAYNNNNRTG	3 cut(s)	77, 158, 263
MspA1I	CMGCKG	1 cut(s)	31
MspI	CCGG	3 cut(s)	7, 156, 170
MspR9I	CCNGG	1 cut(s)	8
Mva1269I	GAATGC	1 cut(s)	171
MvnI	CGCG	1 cut(s)	590
NciI	CCSGG	1 cut(s)	8
NdeI	CATATG	2 cut(s)	292, 483
NdeII	GATC	3 cut(s)	55, 247, 287
NlaIII	CATG	1 cut(s)	144
NlaIV	GGNNCC	2 cut(s)	64, 535
NmeAIII	GCCGAG	1 cut(s)	381
NmuCI	GTSAC	1 cut(s)	359
PceI	AGGCCT	1 cut(s)	302
PctI	GAATGC	1 cut(s)	171
PfeI	GAWTC	2 cut(s)	454, 508
PflMI	CCANNNNNTGG	1 cut(s)	230
PleI	GAGTC	1 cut(s)	405
PpsI	GAGTC	1 cut(s)	405
PspN4I	GGNNCC	2 cut(s)	64, 535
PspOMI	GGGCCC	1 cut(s)	533
PspPI	GGNCC	2 cut(s)	533, 534
RsaI	GTAC	1 cut(s)	554
RsaNI	GTAC	1 cut(s)	553
RseI	CAYNNNNRTG	3 cut(s)	77, 158, 263
SaqAI	TTAA	3 cut(s)	45, 194, 320
Sau3AI	GATC	3 cut(s)	55, 247, 287
Sau96I	GGNCC	2 cut(s)	533, 534
ScaI	AGTACT	1 cut(s)	554
SchI	GAGTC	1 cut(s)	406
ScrFI	CCNGG	1 cut(s)	8
SduI	GDGCHC	1 cut(s)	537
SetI	ASST	7 cut(s)	177, 201, 341, 366, 464, 477, 520
SfaNI	GCATC	2 cut(s)	102, 267
SmiMI	CAYNNNNRTG	3 cut(s)	77, 158, 263
Sse9I	AATT	5 cut(s)	34, 211, 273, 527, 574
SseBI	AGGCCT	1 cut(s)	302
SsiI	CCGC	3 cut(s)	29, 96, 588
StuI	AGGCCT	1 cut(s)	302
StyD4I	CCNGG	1 cut(s)	6
StyI	CCWWGG	1 cut(s)	458
TaaI	ACNGT	2 cut(s)	245, 283
TaiI	ACGT	1 cut(s)	341
TaqI	TCGA	3 cut(s)	240, 261, 420
TasI	AATT	5 cut(s)	34, 211, 273, 527, 574
TatI	WGTACW	1 cut(s)	552
TfiI	GAWTC	2 cut(s)	454, 508
Tru1I	TTAA	3 cut(s)	45, 194, 320
Tru9I	TTAA	3 cut(s)	45, 194, 320
TscAI	CASTG	1 cut(s)	231
TseFI	GTSAC	1 cut(s)	359
Tsp45I	GTSAC	1 cut(s)	359
TspDTI	ATGAA	3 cut(s)	61, 65, 500
TspGWI	ACGGA	1 cut(s)	509
TspRI	CASTG	1 cut(s)	231
Van91I	CCANNNNNTGG	1 cut(s)	230
XapI	RAATTY	2 cut(s)	34, 527
XcmI	CCANNNNNNNNNTGG	1 cut(s)	73
ZrmI	AGTACT	1 cut(s)	554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.