Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8360049.1

Orthogroup ID

OG0004536

Physical Location & Seq

Genomic Coordinates Forward (+)

187 .. 1077

Gene Structure 891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8360049.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

atggatgagaccgccccaacatcctcctctatacttgaagatggcgattatcatgaggtcaaagacctctctgtctctgaagttgtggagagatgtgaagctctcttgaaaaaattagatgatgagaacttcagtttgatttcacgagacaagtctaaccagacctattgtgcttgtagtgatggcgtcaaacgttatgcgctgaaggatataaataaatgctcaaaaccaagtgcaaagaaaagagaagtcatccgttatataattaatgttgttattgagtcctgcgaacaaggaaaacgacctatgttcgaacaacaaaaaatatcgaactcagctcttgatgacatttgttgcgctataaactgcagcagatccaacctcaacatagatgctagtgcaagaggcgttgttggaggtctgctttcgatcaagattggaaagtacaaaaccttgtgtacacgcagggatgatggggaacccatcccgccttttatgcattcagatattattttgaagaatcgtggagccaagttcgtattggtggtggaaaagaaatccgcttttaatactctcatgcaagacaagttttacgttgattatccatgtataatcatcaccggaatgggaatgccggaggtggggagcagaagttttctaaacgtaatgtcggagaagtttaagattccagtgtatggccttttcgactgtgatccagctggcatcgaaattttttcggtttatgctgcggggtcgtacaataaatcgtacgataatgtgaatttgacttgcccgtatatgatgtggttgggtgtttggccgagtgacctacatgcacttaaaataccctgccaggatttaactcgatacgagattaagaaagtagacctt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000706 GO:0000729 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003916 GO:0003918 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0016889 GO:0016894 GO:0017111 GO:0022402 GO:0022414 GO:0030957 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0035825 GO:0042138 GO:0042623 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046983 GO:0048285 GO:0050896 GO:0051321 GO:0051716 GO:0061505 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

TP6A_N

Protein Analysis

297

Amino Acids

33.39

Weight (kDa)

6.35

Isoelectric Point (pI)

45.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004536)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43731 FvH4_3g43753
rosa_chinensis	RchiOBHm_Chr2g0086091 RchiOBHm_Chr2g0089291 RchiOBHm_Chr2g0089851 RchiOBHm_Chr5g0083311
rosa_laevigata	RLG00000015741 RLG00000016061 RLG00000017209
rosa_multiflora	Rmu_co8293021.1_g000001 Rmu_co8360049.1_g000001 Rmu_sc0000388.1_g000047 Rmu_sc0002384.1_g000009 Rmu_sc0003382.1_g000021 Rmu_sc0017765.1_g000002 Rmu_ssc0000355.1_g000016
rosa_roxburghii	Rroxscaffold_2G00140180 Rroxscaffold_2G00151540
rosa_rugosa	Rorug01G0465600 Rorug01G0488800 Rorug02G0003700
rosa_samantha	Rh2AG015000 Rh2AG045100 Rh2AG048900 Rh2BG047800 Rh2CG016000 Rh2CG016100 Rh2CG045000 Rh2CG049900 Rh5BG561000 Rh5CG583600
rosa_wichuraiana	Rw2G001320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	71
AccB7I	CCANNNNNTGG	1 cut(s)	695
AccI	GTMKAC	1 cut(s)	885
AciI	CCGC	4 cut(s)	12, 488, 561, 749
AclI	AACGTT	1 cut(s)	193
AclWI	GGATC	2 cut(s)	369, 707
AcoI	YGGCCR	1 cut(s)	818
AcsI	RAATTY	2 cut(s)	729, 781
AcuI	CTGAAG	3 cut(s)	99, 115, 224
AcyI	GRCGYC	1 cut(s)	186
AfaI	GTAC	4 cut(s)	446, 460, 758, 770
AfiI	CCNNNNNNNGG	2 cut(s)	641, 695
AgsI	TTSAA	3 cut(s)	38, 109, 517
AjnI	CCWGG	1 cut(s)	852
AluBI	AGCT	3 cut(s)	101, 338, 719
AluI	AGCT	3 cut(s)	101, 338, 719
Alw26I	GTCTC	3 cut(s)	2, 79, 141
AlwI	GGATC	2 cut(s)	369, 707
AoxI	GGCC	2 cut(s)	697, 818
ApeKI	GCWGC	2 cut(s)	369, 746
ApoI	RAATTY	2 cut(s)	729, 781
AseI	ATTAAT	1 cut(s)	267
AspLEI	GCGC	2 cut(s)	202, 359
AsuHPI	GGTGA	1 cut(s)	610
AsuII	TTCGAA	1 cut(s)	312
BauI	CACGAG	1 cut(s)	144
BbvI	GCAGC	2 cut(s)	381, 733
BccI	CCATC	4 cut(s)	35, 176, 467, 491
BciT130I	CCWGG	1 cut(s)	854
BcoDI	GTCTC	3 cut(s)	2, 79, 141
BfaI	CTAG	1 cut(s)	396
BfmI	CTRYAG	1 cut(s)	367
BisI	GCNGC	2 cut(s)	370, 747
BlsI	GCNGC	2 cut(s)	371, 748
Bme1390I	CCNGG	1 cut(s)	854
BmiI	GGNNCC	2 cut(s)	480, 529
BmrFI	CCNGG	1 cut(s)	854
BmsI	GCATC	2 cut(s)	382, 732
Bpu14I	TTCGAA	1 cut(s)	312
BsaHI	GRCGYC	1 cut(s)	186
BsaI	GGTCTC	1 cut(s)	2
BsaWI	WCCGGW	1 cut(s)	620
BsaXI	ACNNNNNCTCC	2 cut(s)	637, 667
Bsc4I	CCNNNNNNNGG	2 cut(s)	641, 695
Bse1I	ACTGG	1 cut(s)	689
BseBI	CCWGG	1 cut(s)	854
BseGI	GGATG	5 cut(s)	10, 20, 252, 475, 483
BseLI	CCNNNNNNNGG	2 cut(s)	641, 695
BseMII	CTCAG	1 cut(s)	348
BseNI	ACTGG	1 cut(s)	689
BseRI	GAGGAG	1 cut(s)	16
BseXI	GCAGC	2 cut(s)	381, 733
BshFI	GGCC	2 cut(s)	699, 820
BsiSI	CCGG	2 cut(s)	621, 635
BsiWI	CGTACG	1 cut(s)	768
BslI	CCNNNNNNNGG	2 cut(s)	641, 695
BsmAI	GTCTC	3 cut(s)	2, 79, 141
BsmI	GAATGC	2 cut(s)	499, 636
BsnI	GGCC	2 cut(s)	699, 820
Bso31I	GGTCTC	1 cut(s)	2
Bsp119I	TTCGAA	1 cut(s)	312
Bsp1407I	TGTACA	1 cut(s)	458
Bsp143I	GATC	3 cut(s)	374, 429, 712
BspACI	CCGC	4 cut(s)	12, 488, 561, 749
BspANI	GGCC	2 cut(s)	699, 820
BspCNI	CTCAG	1 cut(s)	347
BspHI	TCATGA	1 cut(s)	52
BspLI	GGNNCC	2 cut(s)	480, 529
BspMAI	CTGCAG	1 cut(s)	371
BspPI	GGATC	2 cut(s)	369, 707
BspT104I	TTCGAA	1 cut(s)	312
BspTNI	GGTCTC	1 cut(s)	2
BsrGI	TGTACA	1 cut(s)	458
BsrI	ACTGG	1 cut(s)	689
BssMI	GATC	3 cut(s)	374, 429, 712
BssNI	GRCGYC	1 cut(s)	186
BssSI	CACGAG	1 cut(s)	144
Bst2BI	CACGAG	1 cut(s)	144
Bst2UI	CCWGG	1 cut(s)	854
Bst4CI	ACNGT	1 cut(s)	710
BstACI	GRCGYC	1 cut(s)	186
BstAUI	TGTACA	1 cut(s)	458
BstBI	TTCGAA	1 cut(s)	312
BstC8I	GCNNGC	1 cut(s)	721
BstDEI	CTNAG	1 cut(s)	334
BstF5I	GGATG	5 cut(s)	10, 20, 252, 475, 483
BstHHI	GCGC	2 cut(s)	202, 359
BstKTI	GATC	3 cut(s)	377, 432, 715
BstMAI	GTCTC	3 cut(s)	2, 79, 141
BstMBI	GATC	3 cut(s)	374, 429, 712
BstMWI	GCNNNNNNNGC	1 cut(s)	496
BstNI	CCWGG	1 cut(s)	854
BstNSI	RCATGY	1 cut(s)	836
BstSCI	CCNGG	1 cut(s)	852
BstSFI	CTRYAG	1 cut(s)	367
BstV1I	GCAGC	2 cut(s)	381, 733
BstX2I	RGATCY	1 cut(s)	374
BstYI	RGATCY	1 cut(s)	374
BsuRI	GGCC	2 cut(s)	699, 820
BtsCI	GGATG	5 cut(s)	10, 20, 252, 475, 483
BtsIMutI	CAGTG	1 cut(s)	696
Cac8I	GCNNGC	1 cut(s)	721
CciI	TCATGA	1 cut(s)	52
CfoI	GCGC	2 cut(s)	202, 359
CseI	GACGC	1 cut(s)	175
Csp6I	GTAC	4 cut(s)	445, 459, 757, 769
CviAII	CATG	4 cut(s)	53, 577, 606, 833
CviJI	RGCY	6 cut(s)	101, 338, 530, 699, 719, 820
CviKI_1	RGCY	6 cut(s)	101, 338, 530, 699, 719, 820
CviQI	GTAC	4 cut(s)	445, 459, 757, 769
DdeI	CTNAG	1 cut(s)	334
DpnI	GATC	3 cut(s)	376, 431, 714
DpnII	GATC	3 cut(s)	374, 429, 712
DrdI	GACNNNNNNGTC	1 cut(s)	71
DseDI	GACNNNNNNGTC	1 cut(s)	71
EaeI	YGGCCR	1 cut(s)	818
Eco31I	GGTCTC	1 cut(s)	2
Eco57I	CTGAAG	3 cut(s)	99, 115, 224
EcoRII	CCWGG	1 cut(s)	852
EcoT22I	ATGCAT	1 cut(s)	501
FaeI	CATG	4 cut(s)	56, 580, 609, 836
FalI	AAGNNNNNCTT	1 cut(s)	873
FatI	CATG	4 cut(s)	52, 576, 605, 832
FauI	CCCGC	2 cut(s)	495, 742
FblI	GTMKAC	1 cut(s)	885
Fnu4HI	GCNGC	2 cut(s)	370, 747
FokI	GGATG	5 cut(s)	7, 17, 239, 470, 482
Fsp4HI	GCNGC	2 cut(s)	370, 747
FspBI	CTAG	1 cut(s)	396
GlaI	GCGC	2 cut(s)	201, 358
GluI	GCNGC	2 cut(s)	370, 747
HaeIII	GGCC	2 cut(s)	699, 820
HapII	CCGG	2 cut(s)	621, 635
HgaI	GACGC	1 cut(s)	175
HhaI	GCGC	2 cut(s)	202, 359
Hin1I	GRCGYC	1 cut(s)	186
Hin1II	CATG	4 cut(s)	56, 580, 609, 836
Hin6I	GCGC	2 cut(s)	200, 357
HinP1I	GCGC	2 cut(s)	200, 357
HinfI	GANTC	3 cut(s)	281, 520, 685
HpaII	CCGG	2 cut(s)	621, 635
HphI	GGTGA	1 cut(s)	610
Hpy166II	GTNNAC	3 cut(s)	459, 461, 886
Hpy188I	TCNGA	3 cut(s)	79, 505, 673
Hpy188III	TCNNGA	5 cut(s)	53, 106, 144, 341, 433
Hpy8I	GTNNAC	3 cut(s)	459, 461, 886
HpyAV	CCTTC	1 cut(s)	199
HpyCH4III	ACNGT	1 cut(s)	710
HpyCH4IV	ACGT	3 cut(s)	193, 594, 663
HpyCH4V	TGCA	6 cut(s)	236, 369, 401, 499, 580, 836
HpyF10VI	GCNNNNNNNGC	1 cut(s)	496
HpyF3I	CTNAG	1 cut(s)	334
HpySE526I	ACGT	3 cut(s)	193, 594, 663
Hsp92I	GRCGYC	1 cut(s)	186
Hsp92II	CATG	4 cut(s)	56, 580, 609, 836
HspAI	GCGC	2 cut(s)	200, 357
Kzo9I	GATC	3 cut(s)	374, 429, 712
LmnI	GCTCC	2 cut(s)	527, 645
Lsp1109I	GCAGC	2 cut(s)	381, 733
LweI	GCATC	2 cut(s)	382, 732
MaeI	CTAG	1 cut(s)	396
MaeII	ACGT	3 cut(s)	193, 594, 663
MaeIII	GTNAC	1 cut(s)	824
MalI	GATC	3 cut(s)	376, 431, 714
MboI	GATC	3 cut(s)	374, 429, 712
MboII	GAAGA	2 cut(s)	50, 529
MflI	RGATCY	1 cut(s)	374
MluCI	AATT	4 cut(s)	113, 264, 729, 781
MlyI	GAGTC	1 cut(s)	290
MmeI	TCCRAC	3 cut(s)	394, 402, 651
MnlI	CCTC	8 cut(s)	34, 37, 49, 77, 392, 398, 410, 631
Mph1103I	ATGCAT	1 cut(s)	501
MseI	TTAA	6 cut(s)	267, 567, 681, 840, 860, 876
MslI	CAYNNNNRTG	1 cut(s)	623
MspA1I	CMGCKG	1 cut(s)	719
MspI	CCGG	2 cut(s)	621, 635
MspR9I	CCNGG	1 cut(s)	854
Mva1269I	GAATGC	2 cut(s)	499, 636
MvaI	CCWGG	1 cut(s)	854
MwoI	GCNNNNNNNGC	1 cut(s)	496
NdeII	GATC	3 cut(s)	374, 429, 712
NlaIII	CATG	4 cut(s)	56, 580, 609, 836
NlaIV	GGNNCC	2 cut(s)	480, 529
NmeAIII	GCCGAG	1 cut(s)	846
NmuCI	GTSAC	1 cut(s)	824
NsiI	ATGCAT	1 cut(s)	501
NspI	RCATGY	1 cut(s)	836
NspV	TTCGAA	1 cut(s)	312
PagI	TCATGA	1 cut(s)	52
PctI	GAATGC	2 cut(s)	499, 636
PfeI	GAWTC	2 cut(s)	520, 685
Pfl23II	CGTACG	1 cut(s)	768
PflMI	CCANNNNNTGG	1 cut(s)	695
PkrI	GCNGC	2 cut(s)	371, 748
PleI	GAGTC	1 cut(s)	289
PpsI	GAGTC	1 cut(s)	289
PshBI	ATTAAT	1 cut(s)	267
Psp1406I	AACGTT	1 cut(s)	193
Psp6I	CCWGG	1 cut(s)	852
PspGI	CCWGG	1 cut(s)	852
PspLI	CGTACG	1 cut(s)	768
PspN4I	GGNNCC	2 cut(s)	480, 529
PstI	CTGCAG	1 cut(s)	371
PsuI	RGATCY	1 cut(s)	374
PvuII	CAGCTG	1 cut(s)	719
RsaI	GTAC	4 cut(s)	446, 460, 758, 770
RsaNI	GTAC	4 cut(s)	445, 459, 757, 769
RseI	CAYNNNNRTG	1 cut(s)	623
SaqAI	TTAA	6 cut(s)	267, 567, 681, 840, 860, 876
SatI	GCNGC	2 cut(s)	370, 747
Sau3AI	GATC	3 cut(s)	374, 429, 712
SchI	GAGTC	1 cut(s)	290
ScrFI	CCNGG	1 cut(s)	854
SfaNI	GCATC	2 cut(s)	382, 732
SfcI	CTRYAG	1 cut(s)	367
SfuI	TTCGAA	1 cut(s)	312
SmiMI	CAYNNNNRTG	1 cut(s)	623
Sse9I	AATT	4 cut(s)	113, 264, 729, 781
SsiI	CCGC	4 cut(s)	12, 488, 561, 749
SspMI	CTAG	1 cut(s)	396
StyD4I	CCNGG	1 cut(s)	852
TaaI	ACNGT	1 cut(s)	710
TaiI	ACGT	3 cut(s)	196, 597, 666
TaqI	TCGA	6 cut(s)	312, 329, 428, 705, 726, 865
TasI	AATT	4 cut(s)	113, 264, 729, 781
TatI	WGTACW	2 cut(s)	444, 458
TfiI	GAWTC	2 cut(s)	520, 685
Tru1I	TTAA	6 cut(s)	267, 567, 681, 840, 860, 876
Tru9I	TTAA	6 cut(s)	267, 567, 681, 840, 860, 876
TscAI	CASTG	1 cut(s)	696
TseFI	GTSAC	1 cut(s)	824
TseI	GCWGC	2 cut(s)	369, 746
Tsp45I	GTSAC	1 cut(s)	824
TspGWI	ACGGA	1 cut(s)	245
TspRI	CASTG	1 cut(s)	696
Van91I	CCANNNNNTGG	1 cut(s)	695
VspI	ATTAAT	1 cut(s)	267
XapI	RAATTY	2 cut(s)	729, 781
XceI	RCATGY	1 cut(s)	836
XcmI	CCANNNNNNNNNTGG	1 cut(s)	538
XmiI	GTMKAC	1 cut(s)	885
XspI	CTAG	1 cut(s)	396
Zsp2I	ATGCAT	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.