Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004536

Physical Location & Seq

Genomic Coordinates Forward (+)

88972920 .. 88973984

Gene Structure 1065 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35746

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGATGAGACCGCCCCAACATCCTCCTCTATACTTGAAGATGGCGATTATCATGAGGTCAAAGACCTCTCTGTCTCTGAAGTTGTGGAGAGATGTGAAGCTCTCTTGAAAAAATTAGATGATGAGAACTTCAGTTTGATTTCACGAGACAAGTCTAACCAGACCTATTGTGCTTGTAGTGATGGCGTCAAACGTTATGCGCTGAAGGATATAAATAAATGCTCAAAACCAAGTGCAAAGAAAAGAGAAGTCATCCGTTATATAATTAATGTTGTTATTGAGTCCTGCGAACAAGGAAAACGACCTATGTTCGAACAACAAAAAATATCGAACTCAGCTCTTGATGACATTTGTTGCGCTATAAACTGCAGCAGATCCAACCTCAACATAGATGCTAGTGCAAGAGGCGTTGTTGGAGGTCTGCTTTCGATCAAGATTGGAAAGTACAAAACCTTGTGTACACGCAGGGATGATGGGGAACCCATCCCGCCTTTTATGCATTCAGATATTATTTTGAAGAATCGTGGAGCCAAGTTCGTATTGGTGGTGGAAAAGAAATCCGCTTTTAATACTCTCATGCAAGACAAGTTTTACGTTGATTATCCATGTATAATCATCACCGGAATGGGAATGCCGGAGGTGGGGAGCAGAAGTTTTCTAAACGTAATGTCGGAGAAGTTTAAGATTCCAGTGTATGGCCTTTTCGACTGTGATCCAGCTGGCATCGAAATTTTTTCGGTTTATGCTGCGGGGTCGTACAATAAATCGTACGATAATGTGAATTTGACTTGCCCGTATATGATGTGGTTGGGTGTTTGGCCGAGTGACCTACATGCACTTAAAATACCCTGCCAGGATTTAACTCGATACGAGATTAAGAAAGTAGACCTTCTTTTGGAAAAAGATTTTGTGAAAGAGTATCCGACATTGCTTGAGGAGCTGCAACTTATGAAGAAGAAGAAGAAGAAGGCGAACCTTGAAGCTTTGGAGAAGTTTGGGCGCACTTGTTTGAGCGAGTACTATTTGCCATATAAGTTGAAGTATCTCTTAACCGACACCGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000706 GO:0000729 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003916 GO:0003918 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0016889 GO:0016894 GO:0017111 GO:0022402 GO:0022414 GO:0030957 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0035825 GO:0042138 GO:0042623 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046983 GO:0048285 GO:0050896 GO:0051321 GO:0051716 GO:0061505 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

TP6A_N

Protein Analysis

354

Amino Acids

40.25

Weight (kDa)

7.38

Isoelectric Point (pI)

42.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TP6A_N	PF04406	102 - 130	5.6e-06	Type IIB DNA topoisomerase
TOP6A-Spo11_Toprim	PF21180	179 - 346	9.9e-53	Topoisomerase 6 subunit A/Spo11, Toprim domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004536)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43731 FvH4_3g43753
rosa_chinensis	RchiOBHm_Chr2g0086091 RchiOBHm_Chr2g0089291 RchiOBHm_Chr2g0089851 RchiOBHm_Chr5g0083311
rosa_laevigata	RLG00000015741 RLG00000016061 RLG00000017209
rosa_multiflora	Rmu_co8293021.1_g000001 Rmu_co8360049.1_g000001 Rmu_sc0000388.1_g000047 Rmu_sc0002384.1_g000009 Rmu_sc0003382.1_g000021 Rmu_sc0017765.1_g000002 Rmu_ssc0000355.1_g000016
rosa_roxburghii	Rroxscaffold_2G00140180 Rroxscaffold_2G00151540
rosa_rugosa	Rorug01G0465600 Rorug01G0488800 Rorug02G0003700
rosa_samantha	Rh2AG015000 Rh2AG045100 Rh2AG048900 Rh2BG047800 Rh2CG016000 Rh2CG016100 Rh2CG045000 Rh2CG049900 Rh5BG561000 Rh5CG583600
rosa_wichuraiana	Rw2G001320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	71
AccB7I	CCANNNNNTGG	1 cut(s)	695
AccI	GTMKAC	1 cut(s)	885
AciI	CCGC	4 cut(s)	12, 488, 561, 749
AclI	AACGTT	1 cut(s)	193
AclWI	GGATC	2 cut(s)	369, 707
AcoI	YGGCCR	1 cut(s)	818
AcsI	RAATTY	2 cut(s)	729, 781
AcuI	CTGAAG	3 cut(s)	99, 115, 224
AcyI	GRCGYC	1 cut(s)	186
AfaI	GTAC	5 cut(s)	446, 460, 758, 770, 1019
AfiI	CCNNNNNNNGG	3 cut(s)	641, 695, 895
AgsI	TTSAA	5 cut(s)	38, 109, 517, 980, 1039
AjnI	CCWGG	1 cut(s)	852
AluBI	AGCT	5 cut(s)	101, 338, 719, 940, 983
AluI	AGCT	5 cut(s)	101, 338, 719, 940, 983
Alw26I	GTCTC	3 cut(s)	2, 79, 141
AlwI	GGATC	2 cut(s)	369, 707
AoxI	GGCC	2 cut(s)	697, 818
ApeKI	GCWGC	3 cut(s)	369, 746, 940
ApoI	RAATTY	2 cut(s)	729, 781
AseI	ATTAAT	1 cut(s)	267
AspLEI	GCGC	3 cut(s)	202, 359, 1002
AsuHPI	GGTGA	1 cut(s)	610
AsuII	TTCGAA	1 cut(s)	312
BauI	CACGAG	1 cut(s)	144
BbvI	GCAGC	3 cut(s)	381, 733, 927
BccI	CCATC	4 cut(s)	35, 176, 467, 491
BciT130I	CCWGG	1 cut(s)	854
BciVI	GTATCC	1 cut(s)	930
BcoDI	GTCTC	3 cut(s)	2, 79, 141
BfaI	CTAG	1 cut(s)	396
BfmI	CTRYAG	1 cut(s)	367
BfuI	GTATCC	1 cut(s)	930
BisI	GCNGC	3 cut(s)	370, 747, 941
BlsI	GCNGC	3 cut(s)	371, 748, 942
BmcAI	AGTACT	1 cut(s)	1019
Bme1390I	CCNGG	1 cut(s)	854
BmiI	GGNNCC	2 cut(s)	480, 529
BmrFI	CCNGG	1 cut(s)	854
BmsI	GCATC	2 cut(s)	382, 732
Bpu14I	TTCGAA	1 cut(s)	312
BpuEI	CTTGAG	1 cut(s)	953
BsaHI	GRCGYC	1 cut(s)	186
BsaI	GGTCTC	1 cut(s)	2
BsaWI	WCCGGW	1 cut(s)	620
BsaXI	ACNNNNNCTCC	2 cut(s)	637, 667
Bsc4I	CCNNNNNNNGG	3 cut(s)	641, 695, 895
Bse1I	ACTGG	1 cut(s)	689
Bse3DI	GCAATG	1 cut(s)	926
BseBI	CCWGG	1 cut(s)	854
BseGI	GGATG	5 cut(s)	10, 20, 252, 475, 483
BseLI	CCNNNNNNNGG	3 cut(s)	641, 695, 895
BseMI	GCAATG	1 cut(s)	926
BseMII	CTCAG	1 cut(s)	348
BseNI	ACTGG	1 cut(s)	689
BseRI	GAGGAG	2 cut(s)	16, 950
BseXI	GCAGC	3 cut(s)	381, 733, 927
BshFI	GGCC	2 cut(s)	699, 820
BsiSI	CCGG	2 cut(s)	621, 635
BsiWI	CGTACG	1 cut(s)	768
BslI	CCNNNNNNNGG	3 cut(s)	641, 695, 895
BsmAI	GTCTC	3 cut(s)	2, 79, 141
BsmI	GAATGC	2 cut(s)	499, 636
BsnI	GGCC	2 cut(s)	699, 820
Bso31I	GGTCTC	1 cut(s)	2
Bsp119I	TTCGAA	1 cut(s)	312
Bsp1407I	TGTACA	1 cut(s)	458
Bsp143I	GATC	3 cut(s)	374, 429, 712
BspACI	CCGC	4 cut(s)	12, 488, 561, 749
BspANI	GGCC	2 cut(s)	699, 820
BspCNI	CTCAG	1 cut(s)	347
BspHI	TCATGA	1 cut(s)	52
BspLI	GGNNCC	2 cut(s)	480, 529
BspMAI	CTGCAG	1 cut(s)	371
BspPI	GGATC	2 cut(s)	369, 707
BspT104I	TTCGAA	1 cut(s)	312
BspTNI	GGTCTC	1 cut(s)	2
BsrDI	GCAATG	1 cut(s)	926
BsrGI	TGTACA	1 cut(s)	458
BsrI	ACTGG	1 cut(s)	689
BssMI	GATC	3 cut(s)	374, 429, 712
BssNI	GRCGYC	1 cut(s)	186
BssSI	CACGAG	1 cut(s)	144
Bst2BI	CACGAG	1 cut(s)	144
Bst2UI	CCWGG	1 cut(s)	854
Bst4CI	ACNGT	1 cut(s)	710
BstACI	GRCGYC	1 cut(s)	186
BstAUI	TGTACA	1 cut(s)	458
BstBI	TTCGAA	1 cut(s)	312
BstC8I	GCNNGC	1 cut(s)	721
BstDEI	CTNAG	1 cut(s)	334
BstF5I	GGATG	5 cut(s)	10, 20, 252, 475, 483
BstHHI	GCGC	3 cut(s)	202, 359, 1002
BstKTI	GATC	3 cut(s)	377, 432, 715
BstMAI	GTCTC	3 cut(s)	2, 79, 141
BstMBI	GATC	3 cut(s)	374, 429, 712
BstMWI	GCNNNNNNNGC	2 cut(s)	496, 937
BstNI	CCWGG	1 cut(s)	854
BstNSI	RCATGY	1 cut(s)	836
BstSCI	CCNGG	1 cut(s)	852
BstSFI	CTRYAG	1 cut(s)	367
BstV1I	GCAGC	3 cut(s)	381, 733, 927
BstX2I	RGATCY	1 cut(s)	374
BstYI	RGATCY	1 cut(s)	374
BsuI	GTATCC	1 cut(s)	930
BsuRI	GGCC	2 cut(s)	699, 820
BtsCI	GGATG	5 cut(s)	10, 20, 252, 475, 483
BtsIMutI	CAGTG	1 cut(s)	696
Cac8I	GCNNGC	1 cut(s)	721
CciI	TCATGA	1 cut(s)	52
CfoI	GCGC	3 cut(s)	202, 359, 1002
CseI	GACGC	1 cut(s)	175
Csp6I	GTAC	5 cut(s)	445, 459, 757, 769, 1018
CviAII	CATG	4 cut(s)	53, 577, 606, 833
CviJI	RGCY	8 cut(s)	101, 338, 530, 699, 719, 820, 940, 983
CviKI_1	RGCY	8 cut(s)	101, 338, 530, 699, 719, 820, 940, 983
CviQI	GTAC	5 cut(s)	445, 459, 757, 769, 1018
DdeI	CTNAG	1 cut(s)	334
DpnI	GATC	3 cut(s)	376, 431, 714
DpnII	GATC	3 cut(s)	374, 429, 712
DrdI	GACNNNNNNGTC	1 cut(s)	71
DseDI	GACNNNNNNGTC	1 cut(s)	71
EaeI	YGGCCR	1 cut(s)	818
Eco31I	GGTCTC	1 cut(s)	2
Eco57I	CTGAAG	3 cut(s)	99, 115, 224
EcoRII	CCWGG	1 cut(s)	852
EcoT22I	ATGCAT	1 cut(s)	501
FaeI	CATG	4 cut(s)	56, 580, 609, 836
FalI	AAGNNNNNCTT	4 cut(s)	873, 905, 1031, 1063
FatI	CATG	4 cut(s)	52, 576, 605, 832
FauI	CCCGC	2 cut(s)	495, 742
FblI	GTMKAC	1 cut(s)	885
Fnu4HI	GCNGC	3 cut(s)	370, 747, 941
FokI	GGATG	5 cut(s)	7, 17, 239, 470, 482
Fsp4HI	GCNGC	3 cut(s)	370, 747, 941
FspBI	CTAG	1 cut(s)	396
GlaI	GCGC	3 cut(s)	201, 358, 1001
GluI	GCNGC	3 cut(s)	370, 747, 941
HaeIII	GGCC	2 cut(s)	699, 820
HapII	CCGG	2 cut(s)	621, 635
HgaI	GACGC	1 cut(s)	175
HhaI	GCGC	3 cut(s)	202, 359, 1002
Hin1I	GRCGYC	1 cut(s)	186
Hin1II	CATG	4 cut(s)	56, 580, 609, 836
Hin6I	GCGC	3 cut(s)	200, 357, 1000
HinP1I	GCGC	3 cut(s)	200, 357, 1000
HindIII	AAGCTT	1 cut(s)	981
HinfI	GANTC	3 cut(s)	281, 520, 685
HpaII	CCGG	2 cut(s)	621, 635
HphI	GGTGA	1 cut(s)	610
Hpy166II	GTNNAC	3 cut(s)	459, 461, 886
Hpy188I	TCNGA	4 cut(s)	79, 505, 673, 924
Hpy188III	TCNNGA	5 cut(s)	53, 106, 144, 341, 433
Hpy8I	GTNNAC	3 cut(s)	459, 461, 886
HpyAV	CCTTC	3 cut(s)	199, 899, 961
HpyCH4III	ACNGT	1 cut(s)	710
HpyCH4IV	ACGT	3 cut(s)	193, 594, 663
HpyCH4V	TGCA	7 cut(s)	236, 369, 401, 499, 580, 836, 943
HpyF10VI	GCNNNNNNNGC	2 cut(s)	496, 937
HpyF3I	CTNAG	1 cut(s)	334
HpySE526I	ACGT	3 cut(s)	193, 594, 663
Hsp92I	GRCGYC	1 cut(s)	186
Hsp92II	CATG	4 cut(s)	56, 580, 609, 836
HspAI	GCGC	3 cut(s)	200, 357, 1000
Kzo9I	GATC	3 cut(s)	374, 429, 712
LmnI	GCTCC	3 cut(s)	527, 645, 937
Lsp1109I	GCAGC	3 cut(s)	381, 733, 927
LweI	GCATC	2 cut(s)	382, 732
MaeI	CTAG	1 cut(s)	396
MaeII	ACGT	3 cut(s)	193, 594, 663
MaeIII	GTNAC	1 cut(s)	824
MalI	GATC	3 cut(s)	376, 431, 714
MboI	GATC	3 cut(s)	374, 429, 712
MboII	GAAGA	7 cut(s)	50, 529, 964, 967, 970, 973, 976
MflI	RGATCY	1 cut(s)	374
MluCI	AATT	4 cut(s)	113, 264, 729, 781
MlyI	GAGTC	1 cut(s)	290
MmeI	TCCRAC	4 cut(s)	394, 402, 651, 947
MnlI	CCTC	9 cut(s)	34, 37, 49, 77, 392, 398, 410, 631, 928
Mph1103I	ATGCAT	1 cut(s)	501
MseI	TTAA	7 cut(s)	267, 567, 681, 840, 860, 876, 1049
MslI	CAYNNNNRTG	1 cut(s)	623
MspA1I	CMGCKG	1 cut(s)	719
MspI	CCGG	2 cut(s)	621, 635
MspR9I	CCNGG	1 cut(s)	854
Mva1269I	GAATGC	2 cut(s)	499, 636
MvaI	CCWGG	1 cut(s)	854
MwoI	GCNNNNNNNGC	2 cut(s)	496, 937
NdeII	GATC	3 cut(s)	374, 429, 712
NlaIII	CATG	4 cut(s)	56, 580, 609, 836
NlaIV	GGNNCC	2 cut(s)	480, 529
NmeAIII	GCCGAG	1 cut(s)	846
NmuCI	GTSAC	1 cut(s)	824
NsiI	ATGCAT	1 cut(s)	501
NspI	RCATGY	1 cut(s)	836
NspV	TTCGAA	1 cut(s)	312
PagI	TCATGA	1 cut(s)	52
PctI	GAATGC	2 cut(s)	499, 636
PfeI	GAWTC	2 cut(s)	520, 685
Pfl23II	CGTACG	1 cut(s)	768
PflMI	CCANNNNNTGG	1 cut(s)	695
PkrI	GCNGC	3 cut(s)	371, 748, 942
PleI	GAGTC	1 cut(s)	289
PpsI	GAGTC	1 cut(s)	289
PshBI	ATTAAT	1 cut(s)	267
Psp1406I	AACGTT	1 cut(s)	193
Psp6I	CCWGG	1 cut(s)	852
PspGI	CCWGG	1 cut(s)	852
PspLI	CGTACG	1 cut(s)	768
PspN4I	GGNNCC	2 cut(s)	480, 529
PstI	CTGCAG	1 cut(s)	371
PsuI	RGATCY	1 cut(s)	374
PvuII	CAGCTG	1 cut(s)	719
RsaI	GTAC	5 cut(s)	446, 460, 758, 770, 1019
RsaNI	GTAC	5 cut(s)	445, 459, 757, 769, 1018
RseI	CAYNNNNRTG	1 cut(s)	623
SaqAI	TTAA	7 cut(s)	267, 567, 681, 840, 860, 876, 1049
SatI	GCNGC	3 cut(s)	370, 747, 941
Sau3AI	GATC	3 cut(s)	374, 429, 712
ScaI	AGTACT	1 cut(s)	1019
SchI	GAGTC	1 cut(s)	290
ScrFI	CCNGG	1 cut(s)	854
SfaNI	GCATC	2 cut(s)	382, 732
SfcI	CTRYAG	1 cut(s)	367
SfuI	TTCGAA	1 cut(s)	312
SmiMI	CAYNNNNRTG	1 cut(s)	623
SmlI	CTYRAG	1 cut(s)	932
SmoI	CTYRAG	1 cut(s)	932
Sse9I	AATT	4 cut(s)	113, 264, 729, 781
SsiI	CCGC	4 cut(s)	12, 488, 561, 749
SspMI	CTAG	1 cut(s)	396
StyD4I	CCNGG	1 cut(s)	852
TaaI	ACNGT	1 cut(s)	710
TaiI	ACGT	3 cut(s)	196, 597, 666
TaqI	TCGA	6 cut(s)	312, 329, 428, 705, 726, 865
TasI	AATT	4 cut(s)	113, 264, 729, 781
TatI	WGTACW	3 cut(s)	444, 458, 1017
TfiI	GAWTC	2 cut(s)	520, 685
Tru1I	TTAA	7 cut(s)	267, 567, 681, 840, 860, 876, 1049
Tru9I	TTAA	7 cut(s)	267, 567, 681, 840, 860, 876, 1049
TscAI	CASTG	1 cut(s)	696
TseFI	GTSAC	1 cut(s)	824
TseI	GCWGC	3 cut(s)	369, 746, 940
Tsp45I	GTSAC	1 cut(s)	824
TspDTI	ATGAA	1 cut(s)	965
TspGWI	ACGGA	1 cut(s)	245
TspRI	CASTG	1 cut(s)	696
Van91I	CCANNNNNTGG	1 cut(s)	695
VspI	ATTAAT	1 cut(s)	267
XapI	RAATTY	2 cut(s)	729, 781
XceI	RCATGY	1 cut(s)	836
XcmI	CCANNNNNNNNNTGG	1 cut(s)	538
XmiI	GTMKAC	1 cut(s)	885
XspI	CTAG	1 cut(s)	396
ZrmI	AGTACT	1 cut(s)	1019
Zsp2I	ATGCAT	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.