Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004536

Physical Location & Seq

Genomic Coordinates Reverse (-)

1264747 .. 1265862

Gene Structure 1116 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46162

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGATGAATTATGAGGACGCTCCAATAGAAGATCGCAATCGTCACGAGGTCAAAGACCTCTCTATAGAGGAAGTACAGGAGAAACTTGAAGCTCTCAAGAAAAAATTAGATGATGGGAGCTTTAGTTGGATTTCACTAGACAAGTCCAACGTGACCTATGGTGAGTGCAGCGATGGCGTCAAACGTCTTACAGTGAAGGATACAGATAAACGATCTAAACCAAGAGCTGAAAAAAGAGAAAAGACCCTTTCGATGGTTGATCTTATTCTCGGGTTCTTCCAAGCAAACAAGCGAGAAACACATCTTGGGGTGTTTTACGTAGGGAATAATACCGCCAGTTCATTGTTTACACAAGACGAGGAGTACGCAATTCTTAATGACATCTGTTGCACTATAGGCTGCACCAGTTCAAGTCTCTACATAGATGATGCTAGTGTAAGAGGCGTTGTTGGAGGTCTGCTTTCGTGGGTGCAGAATGGGTACGAAACCGATTGTCGAAGCCGGGATGATGGGGTGGCCATCCCGTCCATGCATTCAGATATTAGTTTGAAAAATTGTGGAGCCAAGTTCGTATTGGTGGTGGAAAACAAAGCCAGTTTTTATAATCTCATGCAAGACAGGTTTTACCGTGATTATCCATGCATAATCATCACCGGAATGGGAAAGCCCGGGGTGGCGACCAGAAGATTTTTAAAGCTATTGTCGGACAATTTTAGGCTTCCAGTGTATGGCCTTTTCGACTGTGATCCAGCAAGCATCAAATTGTTTTCGATTTATACTGTTGGGTCATATGAGGAGGCCTTCGATAGTGTAAACTTAACTTGCCCGTATATGACATGGTTGGGTGTTTGGCCGAGTGACCTATGTGCGCTTGACATACCCTGCGACGATATGAGTCCAAAAGAGATTAGAGACATGGATAATCTTTTGAAAGAAGATTTTGTGAAAGATAATCCGAGGTTGGTTGAGGAGCTGGAACATATGAAAGCGACGGAGAAAAAAGGGAATCTTGAAGCTTTGAAGGAGTTTGGGCCCACTTTTTTGTCCAAGTGCTATTTGCCATATAAGTTTAATTATCTTTTGACCGCCGTTCGCCGTGACAAGTGCGCCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000706 GO:0000729 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003916 GO:0003918 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0016889 GO:0016894 GO:0017111 GO:0022402 GO:0022414 GO:0030957 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0035825 GO:0042138 GO:0042623 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046983 GO:0048285 GO:0050896 GO:0051321 GO:0051716 GO:0061505 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

TP6A_N

Protein Analysis

371

Amino Acids

42.18

Weight (kDa)

5.16

Isoelectric Point (pI)

39.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TOP6A-Spo11_Toprim	PF21180	190 - 356	3.1e-48	Topoisomerase 6 subunit A/Spo11, Toprim domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0004536)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43731 FvH4_3g43753
rosa_chinensis	RchiOBHm_Chr2g0086091 RchiOBHm_Chr2g0089291 RchiOBHm_Chr2g0089851 RchiOBHm_Chr5g0083311
rosa_laevigata	RLG00000015741 RLG00000016061 RLG00000017209
rosa_multiflora	Rmu_co8293021.1_g000001 Rmu_co8360049.1_g000001 Rmu_sc0000388.1_g000047 Rmu_sc0002384.1_g000009 Rmu_sc0003382.1_g000021 Rmu_sc0017765.1_g000002 Rmu_ssc0000355.1_g000016
rosa_roxburghii	Rroxscaffold_2G00140180 Rroxscaffold_2G00151540
rosa_rugosa	Rorug01G0465600 Rorug01G0488800 Rorug02G0003700
rosa_samantha	Rh2AG015000 Rh2AG045100 Rh2AG048900 Rh2BG047800 Rh2CG016000 Rh2CG016100 Rh2CG045000 Rh2CG049900 Rh5BG561000 Rh5CG583600
rosa_wichuraiana	Rw2G001320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	603
AccB7I	CCANNNNNTGG	1 cut(s)	728
AciI	CCGC	2 cut(s)	333, 1086
AclWI	GGATC	1 cut(s)	740
AcoI	YGGCCR	2 cut(s)	516, 851
AcyI	GRCGYC	1 cut(s)	177
AfaI	GTAC	3 cut(s)	75, 365, 482
AfiI	CCNNNNNNNGG	2 cut(s)	253, 728
AgsI	TTSAA	6 cut(s)	89, 411, 550, 931, 1013, 1021
AjuI	GAANNNNNNNTTGG	2 cut(s)	288, 320
AluBI	AGCT	6 cut(s)	92, 120, 227, 697, 973, 1016
AluI	AGCT	6 cut(s)	92, 120, 227, 697, 973, 1016
Alw26I	GTCTC	2 cut(s)	419, 906
AlwI	GGATC	1 cut(s)	740
Ama87I	CYCGRG	2 cut(s)	269, 668
AoxI	GGCC	5 cut(s)	516, 730, 798, 851, 1031
ApaI	GGGCCC	1 cut(s)	1035
ApeKI	GCWGC	2 cut(s)	168, 399
AspLEI	GCGC	2 cut(s)	871, 1109
AspS9I	GGNCC	2 cut(s)	1031, 1032
AsuC2I	CCSGG	3 cut(s)	503, 669, 670
AsuHPI	GGTGA	2 cut(s)	173, 643
AvaI	CYCGRG	2 cut(s)	269, 668
BaeGI	GKGCMC	1 cut(s)	1035
BalI	TGGCCA	1 cut(s)	518
BanII	GRGCYC	1 cut(s)	1035
BauI	CACGAG	1 cut(s)	44
BbvI	GCAGC	2 cut(s)	180, 386
BccI	CCATC	5 cut(s)	107, 167, 247, 503, 527
BceAI	ACGGC	2 cut(s)	1073, 1080
BciVI	GTATCC	1 cut(s)	193
BcnI	CCSGG	3 cut(s)	503, 669, 670
BcoDI	GTCTC	2 cut(s)	419, 906
BfaI	CTAG	2 cut(s)	137, 432
BfmI	CTRYAG	2 cut(s)	63, 393
BfuI	GTATCC	1 cut(s)	193
BisI	GCNGC	2 cut(s)	169, 400
BlsI	GCNGC	2 cut(s)	170, 401
Bme1390I	CCNGG	3 cut(s)	503, 669, 670
BmeT110I	CYCGRG	2 cut(s)	269, 668
BmgT120I	GGNCC	2 cut(s)	1031, 1032
BmiI	GGNNCC	2 cut(s)	562, 1033
BmrFI	CCNGG	3 cut(s)	503, 669, 670
BmsI	GCATC	2 cut(s)	418, 765
BpuEI	CTTGAG	1 cut(s)	80
BpuMI	CCSGG	3 cut(s)	503, 669, 670
BsaAI	YACGTR	1 cut(s)	319
BsaBI	GATNNNNATC	1 cut(s)	36
BsaHI	GRCGYC	1 cut(s)	177
BsaJI	CCNNGG	3 cut(s)	668, 669, 956
BsaWI	WCCGGW	1 cut(s)	653
BsaXI	ACNNNNNCTCC	2 cut(s)	109, 139
Bsc4I	CCNNNNNNNGG	2 cut(s)	253, 728
Bse1I	ACTGG	4 cut(s)	336, 405, 594, 722
Bse8I	GATNNNNATC	1 cut(s)	36
BseDI	CCNNGG	3 cut(s)	668, 669, 956
BseGI	GGATG	2 cut(s)	511, 519
BseJI	GATNNNNATC	1 cut(s)	36
BseLI	CCNNNNNNNGG	2 cut(s)	253, 728
BseNI	ACTGG	4 cut(s)	336, 405, 594, 722
BseRI	GAGGAG	3 cut(s)	374, 809, 983
BseSI	GKGCMC	1 cut(s)	1035
BseXI	GCAGC	2 cut(s)	180, 386
BsgI	GTGCAG	3 cut(s)	187, 385, 491
BshFI	GGCC	5 cut(s)	518, 732, 800, 853, 1033
BsiHKCI	CYCGRG	2 cut(s)	269, 668
BsiSI	CCGG	3 cut(s)	502, 654, 669
BslI	CCNNNNNNNGG	2 cut(s)	253, 728
BsmAI	GTCTC	2 cut(s)	419, 906
BsmI	GAATGC	1 cut(s)	532
BsnI	GGCC	5 cut(s)	518, 732, 800, 853, 1033
BsoBI	CYCGRG	2 cut(s)	269, 668
Bsp120I	GGGCCC	1 cut(s)	1031
Bsp1286I	GDGCHC	1 cut(s)	1035
Bsp143I	GATC	4 cut(s)	31, 212, 259, 745
BspACI	CCGC	2 cut(s)	333, 1086
BspANI	GGCC	5 cut(s)	518, 732, 800, 853, 1033
BspLI	GGNNCC	2 cut(s)	562, 1033
BspPI	GGATC	1 cut(s)	740
BsrI	ACTGG	4 cut(s)	336, 405, 594, 722
BssECI	CCNNGG	3 cut(s)	668, 669, 956
BssMI	GATC	4 cut(s)	31, 212, 259, 745
BssNI	GRCGYC	1 cut(s)	177
BssSI	CACGAG	1 cut(s)	44
Bst2BI	CACGAG	1 cut(s)	44
Bst4CI	ACNGT	4 cut(s)	193, 629, 743, 781
BstACI	GRCGYC	1 cut(s)	177
BstBAI	YACGTR	1 cut(s)	319
BstC8I	GCNNGC	1 cut(s)	754
BstF5I	GGATG	2 cut(s)	511, 519
BstHHI	GCGC	2 cut(s)	871, 1109
BstKTI	GATC	4 cut(s)	34, 215, 262, 748
BstMAI	GTCTC	2 cut(s)	419, 906
BstMBI	GATC	4 cut(s)	31, 212, 259, 745
BstMWI	GCNNNNNNNGC	2 cut(s)	174, 396
BstSCI	CCNGG	3 cut(s)	501, 667, 668
BstSFI	CTRYAG	2 cut(s)	63, 393
BstSLI	GKGCMC	1 cut(s)	1035
BstSNI	TACGTA	1 cut(s)	319
BstV1I	GCAGC	2 cut(s)	180, 386
BsuI	GTATCC	1 cut(s)	193
BsuRI	GGCC	5 cut(s)	518, 732, 800, 853, 1033
BtgZI	GCGATG	1 cut(s)	186
BtsCI	GGATG	2 cut(s)	511, 519
BtsIMutI	CAGTG	2 cut(s)	198, 729
Cac8I	GCNNGC	1 cut(s)	754
CfoI	GCGC	2 cut(s)	871, 1109
Cfr13I	GGNCC	2 cut(s)	1031, 1032
Cfr9I	CCCGGG	1 cut(s)	668
CseI	GACGC	2 cut(s)	26, 166
Csp6I	GTAC	3 cut(s)	74, 364, 481
CviAII	CATG	5 cut(s)	529, 610, 639, 837, 916
CviQI	GTAC	3 cut(s)	74, 364, 481
DpnI	GATC	4 cut(s)	33, 214, 261, 747
DpnII	GATC	4 cut(s)	31, 212, 259, 745
DraI	TTTAAA	1 cut(s)	693
EaeI	YGGCCR	2 cut(s)	516, 851
Eco105I	TACGTA	1 cut(s)	319
Eco147I	AGGCCT	1 cut(s)	800
Eco24I	GRGCYC	1 cut(s)	1035
Eco88I	CYCGRG	2 cut(s)	269, 668
EcoT22I	ATGCAT	2 cut(s)	534, 644
EcoT38I	GRGCYC	1 cut(s)	1035
FaeI	CATG	5 cut(s)	532, 613, 642, 840, 919
FalI	AAGNNNNNCTT	2 cut(s)	993, 1025
FatI	CATG	5 cut(s)	528, 609, 638, 836, 915
FauNDI	CATATG	2 cut(s)	790, 981
Fnu4HI	GCNGC	2 cut(s)	169, 400
FokI	GGATG	2 cut(s)	506, 518
FriOI	GRGCYC	1 cut(s)	1035
Fsp4HI	GCNGC	2 cut(s)	169, 400
FspBI	CTAG	2 cut(s)	137, 432
GlaI	GCGC	2 cut(s)	870, 1108
GluI	GCNGC	2 cut(s)	169, 400
HaeIII	GGCC	5 cut(s)	518, 732, 800, 853, 1033
HapII	CCGG	3 cut(s)	502, 654, 669
HgaI	GACGC	2 cut(s)	26, 166
HhaI	GCGC	2 cut(s)	871, 1109
Hin1I	GRCGYC	1 cut(s)	177
Hin1II	CATG	5 cut(s)	532, 613, 642, 840, 919
Hin6I	GCGC	2 cut(s)	869, 1107
HinP1I	GCGC	2 cut(s)	869, 1107
HindIII	AAGCTT	1 cut(s)	1014
HinfI	GANTC	2 cut(s)	895, 1006
HpaII	CCGG	3 cut(s)	502, 654, 669
HphI	GGTGA	2 cut(s)	173, 643
Hpy166II	GTNNAC	2 cut(s)	348, 814
Hpy188I	TCNGA	3 cut(s)	538, 706, 957
Hpy188III	TCNNGA	3 cut(s)	44, 97, 1010
Hpy8I	GTNNAC	2 cut(s)	348, 814
Hpy99I	CGWCG	2 cut(s)	890, 994
HpyAV	CCTTC	3 cut(s)	190, 811, 1015
HpyCH4III	ACNGT	4 cut(s)	193, 629, 743, 781
HpyCH4IV	ACGT	3 cut(s)	150, 184, 318
HpyCH4V	TGCA	7 cut(s)	168, 390, 402, 472, 532, 613, 642
HpyF10VI	GCNNNNNNNGC	2 cut(s)	174, 396
HpySE526I	ACGT	3 cut(s)	150, 184, 318
Hsp92I	GRCGYC	1 cut(s)	177
Hsp92II	CATG	5 cut(s)	532, 613, 642, 840, 919
HspAI	GCGC	2 cut(s)	869, 1107
Kzo9I	GATC	4 cut(s)	31, 212, 259, 745
LmnI	GCTCC	4 cut(s)	25, 117, 560, 970
Lsp1109I	GCAGC	2 cut(s)	180, 386
LweI	GCATC	2 cut(s)	418, 765
MaeI	CTAG	2 cut(s)	137, 432
MaeII	ACGT	3 cut(s)	150, 184, 318
MaeIII	GTNAC	4 cut(s)	41, 151, 857, 1097
MalI	GATC	4 cut(s)	33, 214, 261, 747
MboI	GATC	4 cut(s)	31, 212, 259, 745
MboII	GAAGA	4 cut(s)	41, 268, 696, 947
MhlI	GDGCHC	1 cut(s)	1035
MlsI	TGGCCA	1 cut(s)	518
MluCI	AATT	8 cut(s)	7, 104, 369, 553, 709, 761, 1072, 1111
MluNI	TGGCCA	1 cut(s)	518
MlyI	GAGTC	1 cut(s)	904
MmeI	TCCRAC	4 cut(s)	107, 171, 430, 684
Mox20I	TGGCCA	1 cut(s)	518
Mph1103I	ATGCAT	2 cut(s)	534, 644
MscI	TGGCCA	1 cut(s)	518
MseI	TTAA	5 cut(s)	375, 692, 818, 1071, 1114
MslI	CAYNNNNRTG	1 cut(s)	656
Msp20I	TGGCCA	1 cut(s)	518
MspI	CCGG	3 cut(s)	502, 654, 669
MspR9I	CCNGG	3 cut(s)	503, 669, 670
Mva1269I	GAATGC	1 cut(s)	532
MwoI	GCNNNNNNNGC	2 cut(s)	174, 396
NciI	CCSGG	3 cut(s)	503, 669, 670
NdeI	CATATG	2 cut(s)	790, 981
NdeII	GATC	4 cut(s)	31, 212, 259, 745
NlaIII	CATG	5 cut(s)	532, 613, 642, 840, 919
NlaIV	GGNNCC	2 cut(s)	562, 1033
NmeAIII	GCCGAG	1 cut(s)	879
NmuCI	GTSAC	4 cut(s)	41, 151, 857, 1097
NsiI	ATGCAT	2 cut(s)	534, 644
PceI	AGGCCT	1 cut(s)	800
PctI	GAATGC	1 cut(s)	532
PfeI	GAWTC	1 cut(s)	1006
PflMI	CCANNNNNTGG	1 cut(s)	728
PkrI	GCNGC	2 cut(s)	170, 401
PleI	GAGTC	1 cut(s)	903
PpsI	GAGTC	1 cut(s)	903
Ppu21I	YACGTR	1 cut(s)	319
PsiI	TTATAA	1 cut(s)	603
PspN4I	GGNNCC	2 cut(s)	562, 1033
PspOMI	GGGCCC	1 cut(s)	1031
PspPI	GGNCC	2 cut(s)	1031, 1032
RsaI	GTAC	3 cut(s)	75, 365, 482
RsaNI	GTAC	3 cut(s)	74, 364, 481
RseI	CAYNNNNRTG	1 cut(s)	656
SaqAI	TTAA	5 cut(s)	375, 692, 818, 1071, 1114
SatI	GCNGC	2 cut(s)	169, 400
Sau3AI	GATC	4 cut(s)	31, 212, 259, 745
Sau96I	GGNCC	2 cut(s)	1031, 1032
SchI	GAGTC	1 cut(s)	904
ScrFI	CCNGG	3 cut(s)	503, 669, 670
SduI	GDGCHC	1 cut(s)	1035
SfaNI	GCATC	2 cut(s)	418, 765
SfcI	CTRYAG	2 cut(s)	63, 393
SmaI	CCCGGG	1 cut(s)	670
SmiMI	CAYNNNNRTG	1 cut(s)	656
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
SnaBI	TACGTA	1 cut(s)	319
Sse9I	AATT	8 cut(s)	7, 104, 369, 553, 709, 761, 1072, 1111
SseBI	AGGCCT	1 cut(s)	800
SsiI	CCGC	2 cut(s)	333, 1086
SspMI	CTAG	2 cut(s)	137, 432
StuI	AGGCCT	1 cut(s)	800
StyD4I	CCNGG	3 cut(s)	501, 667, 668
TaaI	ACNGT	4 cut(s)	193, 629, 743, 781
TaiI	ACGT	3 cut(s)	153, 187, 321
TaqI	TCGA	5 cut(s)	251, 496, 738, 770, 804
TasI	AATT	8 cut(s)	7, 104, 369, 553, 709, 761, 1072, 1111
TatI	WGTACW	1 cut(s)	73
TfiI	GAWTC	1 cut(s)	1006
Tru1I	TTAA	5 cut(s)	375, 692, 818, 1071, 1114
Tru9I	TTAA	5 cut(s)	375, 692, 818, 1071, 1114
TscAI	CASTG	2 cut(s)	198, 729
TseFI	GTSAC	4 cut(s)	41, 151, 857, 1097
TseI	GCWGC	2 cut(s)	168, 399
Tsp45I	GTSAC	4 cut(s)	41, 151, 857, 1097
TspDTI	ATGAA	3 cut(s)	20, 330, 998
TspGWI	ACGGA	1 cut(s)	1007
TspMI	CCCGGG	1 cut(s)	668
TspRI	CASTG	2 cut(s)	198, 729
Van91I	CCANNNNNTGG	1 cut(s)	728
XcmI	CCANNNNNNNNNTGG	1 cut(s)	571
XmaI	CCCGGG	1 cut(s)	668
XspI	CTAG	2 cut(s)	137, 432
Zsp2I	ATGCAT	2 cut(s)	534, 644

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.