RLG00000015741

Component of the DNA topoisomerase VI involved in chromatin organization and progression of endoreduplication cycles. Relaxes both positive and negative superturns and exhibits a strong decatenase activity

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
1122159 .. 1123583
1425 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015741

Sequence Viewer

Length: 1143 bp
ATGGCTTCTTGTTTTGATGAACGAGTACCAAGCTGGACAGTACCAAAAAGAGAAGAGGTCCTCACATTAATAACCCTGAACAGCGCAATGTACACCAGACTGATGATGAATTATGAGGACGCTCCAATAGAAGATCGCAATCGTCACGAGGCCAAAGACCTCTCTATAGAGGAAGTACAGGAGAAACTTGAAACTCTGAAGAACAAATTAGACGACGGGAGCTTTAGTTGGATTTCACTAGACAAGTCCAACGTGACCTATGGTGAGTGTAGCGATGGCGTCAAACGTCTTACAGTGAAGGATATAAATAAACGCTCTAAACCAAGAGCTGAAGAAAGAGAAAAGATCCGGAATAATACCGCCAGTTCATTGTTCACACAAGACGAGGAGTACTACGCAATTCTTAATGACATCTGTTGCACTATAGGCTGCAGCAGTTCAAGTCTCTATATAGATGCTAGTGTAAGAGGCCTTGTTGGAGGTCTGCTTTCGTGGGTGCACAATGGGTACGAAACCGATTGTCGAAGCCAGGATGATGGGGTGGCCATCCCGTCCATGCATTCAGATATTAGTATGAAAAATTGTGGAGCCAAGTTCGTATTGGTGGTGGAAAATAAAGCCAGTTTTTATAATCTCATGCAAGACAGGTTTTACCGTGATTATCCATGCATCATCATCACCGGAATGGGAAAGCCCGGGGTGGCGACCAGAAGATTTTTAAAGCTATTGTCGGACAATTTTAGGCTTCCAGTGTATGGCCTTTTCGACTGTGATCCAGCAAGCATCAAAATGTTTTCGATTTATACTGTTGGGTCATATGAGGAGGCCTTCGATAGTGTAAACCTAACTTGCCCGTATATGACATGGTTGGGTGTTTGGCCGAGTGACCTGTGTGCGCTTGACATATCCTGCAACGATTTGAGTCCAAAAGAGATTAGAGAAATGGATAATCTTTTGAAAGAAGATTTTGTGAAAGACAATCCGAGGTTGGTTGAGGAGTTGAAACATATGAAAGAGACGGAGCAAAAAGGGAATCTTGATGCTTTGAAGGAGTTTGGGCCCACTTGTTTGTCAAAGTGCTATTTGCCATATAAGTTGAATTATATTTTAACCGCCGTCTGCCGTGAGAAGTGCACTGATTAA

Protein Analysis

381

Amino Acids

43.36

Weight (kDa)

5.07

Isoelectric Point (pI)

46.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TOP6A-Spo11_Toprim PF21180 199 - 366 4.3e-47 Topoisomerase 6 subunit A/Spo11, Toprim domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 630
AccB7I CCANNNNNTGG 1 cut(s) 755
AccIII TCCGGA 1 cut(s) 348
AciI CCGC 2 cut(s) 360, 1113
AclWI GGATC 2 cut(s) 340, 767
AcoI YGGCCR 2 cut(s) 543, 878
AcuI CTGAAG 2 cut(s) 218, 351
AcyI GRCGYC 1 cut(s) 279
AfaI GTAC 6 cut(s) 27, 42, 92, 177, 392, 509
AfiI CCNNNNNNNGG 1 cut(s) 755
AgsI TTSAA 6 cut(s) 191, 441, 958, 1003, 1048, 1099
AjnI CCWGG 1 cut(s) 528
AluBI AGCT 4 cut(s) 33, 222, 329, 724
AluI AGCT 4 cut(s) 33, 222, 329, 724
Alw21I GWGCWC 2 cut(s) 501, 1136
Alw26I GTCTC 2 cut(s) 449, 1010
Alw44I GTGCAC 2 cut(s) 497, 1132
AlwI GGATC 2 cut(s) 340, 767
Ama87I CYCGRG 1 cut(s) 695
Aor13HI TCCGGA 1 cut(s) 348
AoxI GGCC 7 cut(s) 150, 469, 543, 757, 825, 878, 1058
ApaI GGGCCC 1 cut(s) 1062
ApaLI GTGCAC 2 cut(s) 497, 1132
ApeKI GCWGC 2 cut(s) 429, 432
AseI ATTAAT 1 cut(s) 68
AspLEI GCGC 2 cut(s) 86, 898
AspS9I GGNCC 3 cut(s) 58, 1058, 1059
AsuC2I CCSGG 2 cut(s) 696, 697
AsuHPI GGTGA 2 cut(s) 275, 670
AvaI CYCGRG 1 cut(s) 695
AvaII GGWCC 1 cut(s) 58
BaeGI GKGCMC 3 cut(s) 501, 1062, 1136
BalI TGGCCA 1 cut(s) 545
BanII GRGCYC 1 cut(s) 1062
BauI CACGAG 1 cut(s) 146
Bbv12I GWGCWC 2 cut(s) 501, 1136
BbvI GCAGC 2 cut(s) 416, 444
BccI CCATC 3 cut(s) 269, 530, 554
BceAI ACGGC 2 cut(s) 1100, 1107
BciT130I CCWGG 1 cut(s) 530
BcnI CCSGG 2 cut(s) 696, 697
BcoDI GTCTC 2 cut(s) 449, 1010
BfaI CTAG 2 cut(s) 239, 459
BfmI CTRYAG 3 cut(s) 165, 423, 430
BisI GCNGC 2 cut(s) 430, 433
BlsI GCNGC 2 cut(s) 431, 434
BmcAI AGTACT 1 cut(s) 392
Bme1390I CCNGG 3 cut(s) 530, 696, 697
Bme18I GGWCC 1 cut(s) 58
BmeT110I CYCGRG 1 cut(s) 695
BmgT120I GGNCC 3 cut(s) 58, 1058, 1059
BmiI GGNNCC 2 cut(s) 589, 1060
BmrFI CCNGG 3 cut(s) 530, 696, 697
BmsI GCATC 4 cut(s) 445, 678, 792, 1030
BpuMI CCSGG 2 cut(s) 696, 697
BsaBI GATNNNNATC 1 cut(s) 138
BsaHI GRCGYC 1 cut(s) 279
BsaJI CCNNGG 3 cut(s) 695, 696, 983
BsaWI WCCGGW 2 cut(s) 348, 680
BsaXI ACNNNNNCTCC 2 cut(s) 211, 241
Bsc4I CCNNNNNNNGG 1 cut(s) 755
Bse1I ACTGG 3 cut(s) 363, 621, 749
Bse3DI GCAATG 1 cut(s) 93
Bse8I GATNNNNATC 1 cut(s) 138
BseAI TCCGGA 1 cut(s) 348
BseBI CCWGG 1 cut(s) 530
BseDI CCNNGG 3 cut(s) 695, 696, 983
BseGI GGATG 2 cut(s) 538, 546
BseJI GATNNNNATC 1 cut(s) 138
BseLI CCNNNNNNNGG 1 cut(s) 755
BseMI GCAATG 1 cut(s) 93
BseNI ACTGG 3 cut(s) 363, 621, 749
BseRI GAGGAG 3 cut(s) 401, 836, 1010
BseSI GKGCMC 3 cut(s) 501, 1062, 1136
BseXI GCAGC 2 cut(s) 416, 444
BshFI GGCC 7 cut(s) 152, 471, 545, 759, 827, 880, 1060
BsiHKAI GWGCWC 2 cut(s) 501, 1136
BsiHKCI CYCGRG 1 cut(s) 695
BsiSI CCGG 3 cut(s) 349, 681, 696
BslI CCNNNNNNNGG 1 cut(s) 755
BsmAI GTCTC 2 cut(s) 449, 1010
BsmBI CGTCTC 1 cut(s) 1010
BsmI GAATGC 1 cut(s) 559
BsnI GGCC 7 cut(s) 152, 471, 545, 759, 827, 880, 1060
BsoBI CYCGRG 1 cut(s) 695
Bsp120I GGGCCC 1 cut(s) 1058
Bsp1286I GDGCHC 3 cut(s) 501, 1062, 1136
Bsp13I TCCGGA 1 cut(s) 348
Bsp1407I TGTACA 1 cut(s) 90
Bsp143I GATC 3 cut(s) 133, 345, 772
BspACI CCGC 2 cut(s) 360, 1113
BspANI GGCC 7 cut(s) 152, 471, 545, 759, 827, 880, 1060
BspEI TCCGGA 1 cut(s) 348
BspLI GGNNCC 2 cut(s) 589, 1060
BspMAI CTGCAG 1 cut(s) 434
BspPI GGATC 2 cut(s) 340, 767
BsrDI GCAATG 1 cut(s) 93
BsrGI TGTACA 1 cut(s) 90
BsrI ACTGG 3 cut(s) 363, 621, 749
BssECI CCNNGG 3 cut(s) 695, 696, 983
BssMI GATC 3 cut(s) 133, 345, 772
BssNI GRCGYC 1 cut(s) 279
BssSI CACGAG 1 cut(s) 146
Bst2BI CACGAG 1 cut(s) 146
Bst2UI CCWGG 1 cut(s) 530
Bst4CI ACNGT 5 cut(s) 40, 295, 656, 770, 808
Bst6I CTCTTC 1 cut(s) 48
BstACI GRCGYC 1 cut(s) 279
BstAUI TGTACA 1 cut(s) 90
BstC8I GCNNGC 1 cut(s) 781
BstF5I GGATG 2 cut(s) 538, 546
BstHHI GCGC 2 cut(s) 86, 898
BstKTI GATC 3 cut(s) 136, 348, 775
BstMAI GTCTC 2 cut(s) 449, 1010
BstMBI GATC 3 cut(s) 133, 345, 772
BstMWI GCNNNNNNNGC 1 cut(s) 426
BstNI CCWGG 1 cut(s) 530
BstSCI CCNGG 3 cut(s) 528, 694, 695
BstSFI CTRYAG 3 cut(s) 165, 423, 430
BstSLI GKGCMC 3 cut(s) 501, 1062, 1136
BstV1I GCAGC 2 cut(s) 416, 444
BstX2I RGATCY 1 cut(s) 345
BstXI CCANNNNNNTGG 1 cut(s) 536
BstYI RGATCY 1 cut(s) 345
BsuRI GGCC 7 cut(s) 152, 471, 545, 759, 827, 880, 1060
BtgZI GCGATG 1 cut(s) 288
BtsCI GGATG 2 cut(s) 538, 546
BtsIMutI CAGTG 3 cut(s) 300, 756, 1134
Cac8I GCNNGC 1 cut(s) 781
CfoI GCGC 2 cut(s) 86, 898
Cfr13I GGNCC 3 cut(s) 58, 1058, 1059
Cfr9I CCCGGG 1 cut(s) 695
CseI GACGC 2 cut(s) 128, 268
Csp6I GTAC 6 cut(s) 26, 41, 91, 176, 391, 508
CviAII CATG 4 cut(s) 556, 637, 666, 864
CviQI GTAC 6 cut(s) 26, 41, 91, 176, 391, 508
DpnI GATC 3 cut(s) 135, 347, 774
DpnII GATC 3 cut(s) 133, 345, 772
DraI TTTAAA 1 cut(s) 720
EaeI YGGCCR 2 cut(s) 543, 878
Eam1104I CTCTTC 1 cut(s) 48
EarI CTCTTC 1 cut(s) 48
Eco147I AGGCCT 2 cut(s) 471, 827
Eco24I GRGCYC 1 cut(s) 1062
Eco47I GGWCC 1 cut(s) 58
Eco57I CTGAAG 2 cut(s) 218, 351
Eco88I CYCGRG 1 cut(s) 695
EcoO109I RGGNCCY 1 cut(s) 58
EcoRII CCWGG 1 cut(s) 528
EcoT22I ATGCAT 2 cut(s) 561, 671
EcoT38I GRGCYC 1 cut(s) 1062
Esp3I CGTCTC 1 cut(s) 1010
FaeI CATG 4 cut(s) 559, 640, 669, 867
FalI AAGNNNNNCTT 2 cut(s) 1020, 1052
FatI CATG 4 cut(s) 555, 636, 665, 863
FauNDI CATATG 2 cut(s) 817, 1008
Fnu4HI GCNGC 2 cut(s) 430, 433
FokI GGATG 2 cut(s) 533, 545
FriOI GRGCYC 1 cut(s) 1062
Fsp4HI GCNGC 2 cut(s) 430, 433
FspBI CTAG 2 cut(s) 239, 459
GlaI GCGC 2 cut(s) 85, 897
GluI GCNGC 2 cut(s) 430, 433
HaeIII GGCC 7 cut(s) 152, 471, 545, 759, 827, 880, 1060
HapII CCGG 3 cut(s) 349, 681, 696
HgaI GACGC 2 cut(s) 128, 268
HhaI GCGC 2 cut(s) 86, 898
Hin1I GRCGYC 1 cut(s) 279
Hin1II CATG 4 cut(s) 559, 640, 669, 867
Hin6I GCGC 2 cut(s) 84, 896
HinP1I GCGC 2 cut(s) 84, 896
HinfI GANTC 2 cut(s) 922, 1033
HpaII CCGG 3 cut(s) 349, 681, 696
HphI GGTGA 2 cut(s) 275, 670
Hpy166II GTNNAC 5 cut(s) 93, 375, 499, 841, 1134
Hpy188I TCNGA 4 cut(s) 198, 565, 733, 984
Hpy188III TCNNGA 3 cut(s) 146, 349, 1037
Hpy8I GTNNAC 5 cut(s) 93, 375, 499, 841, 1134
Hpy99I CGWCG 1 cut(s) 218
HpyAV CCTTC 3 cut(s) 292, 838, 1042
HpyCH4III ACNGT 5 cut(s) 40, 295, 656, 770, 808
HpyCH4IV ACGT 2 cut(s) 252, 286
HpyCH4V TGCA 8 cut(s) 420, 432, 499, 559, 640, 669, 912, 1134
HpyF10VI GCNNNNNNNGC 1 cut(s) 426
HpySE526I ACGT 2 cut(s) 252, 286
Hsp92I GRCGYC 1 cut(s) 279
Hsp92II CATG 4 cut(s) 559, 640, 669, 867
HspAI GCGC 2 cut(s) 84, 896
Kpn2I TCCGGA 1 cut(s) 348
Kzo9I GATC 3 cut(s) 133, 345, 772
LmnI GCTCC 4 cut(s) 127, 219, 587, 1021
Lsp1109I GCAGC 2 cut(s) 416, 444
LweI GCATC 4 cut(s) 445, 678, 792, 1030
MaeI CTAG 2 cut(s) 239, 459
MaeII ACGT 2 cut(s) 252, 286
MaeIII GTNAC 3 cut(s) 143, 253, 884
MalI GATC 3 cut(s) 135, 347, 774
MboI GATC 3 cut(s) 133, 345, 772
MboII GAAGA 6 cut(s) 65, 143, 211, 344, 723, 974
MflI RGATCY 1 cut(s) 345
MhlI GDGCHC 3 cut(s) 501, 1062, 1136
MlsI TGGCCA 1 cut(s) 545
MluCI AATT 6 cut(s) 109, 206, 399, 580, 736, 1099
MluNI TGGCCA 1 cut(s) 545
MlyI GAGTC 1 cut(s) 931
MmeI TCCRAC 4 cut(s) 209, 273, 457, 711
Mox20I TGGCCA 1 cut(s) 545
Mph1103I ATGCAT 2 cut(s) 561, 671
MroI TCCGGA 1 cut(s) 348
MscI TGGCCA 1 cut(s) 545
MseI TTAA 5 cut(s) 68, 405, 719, 1109, 1141
MslI CAYNNNNRTG 2 cut(s) 683, 788
Msp20I TGGCCA 1 cut(s) 545
MspI CCGG 3 cut(s) 349, 681, 696
MspR9I CCNGG 3 cut(s) 530, 696, 697
Mva1269I GAATGC 1 cut(s) 559
MvaI CCWGG 1 cut(s) 530
MwoI GCNNNNNNNGC 1 cut(s) 426
NciI CCSGG 2 cut(s) 696, 697
NdeI CATATG 2 cut(s) 817, 1008
NdeII GATC 3 cut(s) 133, 345, 772
NlaIII CATG 4 cut(s) 559, 640, 669, 867
NlaIV GGNNCC 2 cut(s) 589, 1060
NmeAIII GCCGAG 1 cut(s) 906
NmuCI GTSAC 3 cut(s) 143, 253, 884
NsiI ATGCAT 2 cut(s) 561, 671
PceI AGGCCT 2 cut(s) 471, 827
PctI GAATGC 1 cut(s) 559
PfeI GAWTC 1 cut(s) 1033
PflMI CCANNNNNTGG 1 cut(s) 755
PkrI GCNGC 2 cut(s) 431, 434
PleI GAGTC 1 cut(s) 930
PpsI GAGTC 1 cut(s) 930
PpuMI RGGWCCY 1 cut(s) 58
PshBI ATTAAT 1 cut(s) 68
PsiI TTATAA 1 cut(s) 630
Psp5II RGGWCCY 1 cut(s) 58
Psp6I CCWGG 1 cut(s) 528
PspGI CCWGG 1 cut(s) 528
PspN4I GGNNCC 2 cut(s) 589, 1060
PspOMI GGGCCC 1 cut(s) 1058
PspPI GGNCC 3 cut(s) 58, 1058, 1059
PspPPI RGGWCCY 1 cut(s) 58
PstI CTGCAG 1 cut(s) 434
PsuI RGATCY 1 cut(s) 345
RsaI GTAC 6 cut(s) 27, 42, 92, 177, 392, 509
RsaNI GTAC 6 cut(s) 26, 41, 91, 176, 391, 508
RseI CAYNNNNRTG 2 cut(s) 683, 788
SaqAI TTAA 5 cut(s) 68, 405, 719, 1109, 1141
SatI GCNGC 2 cut(s) 430, 433
Sau3AI GATC 3 cut(s) 133, 345, 772
Sau96I GGNCC 3 cut(s) 58, 1058, 1059
ScaI AGTACT 1 cut(s) 392
SchI GAGTC 1 cut(s) 931
ScrFI CCNGG 3 cut(s) 530, 696, 697
SduI GDGCHC 3 cut(s) 501, 1062, 1136
SfaNI GCATC 4 cut(s) 445, 678, 792, 1030
SfcI CTRYAG 3 cut(s) 165, 423, 430
SinI GGWCC 1 cut(s) 58
SmaI CCCGGG 1 cut(s) 697
SmiMI CAYNNNNRTG 2 cut(s) 683, 788
Sse9I AATT 6 cut(s) 109, 206, 399, 580, 736, 1099
SseBI AGGCCT 2 cut(s) 471, 827
SsiI CCGC 2 cut(s) 360, 1113
SspMI CTAG 2 cut(s) 239, 459
StuI AGGCCT 2 cut(s) 471, 827
StyD4I CCNGG 3 cut(s) 528, 694, 695
TaaI ACNGT 5 cut(s) 40, 295, 656, 770, 808
TaiI ACGT 2 cut(s) 255, 289
TaqI TCGA 4 cut(s) 523, 765, 797, 831
TasI AATT 6 cut(s) 109, 206, 399, 580, 736, 1099
TatI WGTACW 3 cut(s) 90, 175, 390
TfiI GAWTC 1 cut(s) 1033
Tru1I TTAA 5 cut(s) 68, 405, 719, 1109, 1141
Tru9I TTAA 5 cut(s) 68, 405, 719, 1109, 1141
TscAI CASTG 3 cut(s) 300, 756, 1141
TseFI GTSAC 3 cut(s) 143, 253, 884
TseI GCWGC 2 cut(s) 429, 432
Tsp45I GTSAC 3 cut(s) 143, 253, 884
TspDTI ATGAA 5 cut(s) 33, 122, 357, 590, 1025
TspGWI ACGGA 1 cut(s) 1034
TspMI CCCGGG 1 cut(s) 695
TspRI CASTG 3 cut(s) 300, 756, 1141
Van91I CCANNNNNTGG 1 cut(s) 755
VneI GTGCAC 2 cut(s) 497, 1132
VpaK11BI GGWCC 1 cut(s) 58
VspI ATTAAT 1 cut(s) 68
XcmI CCANNNNNNNNNTGG 1 cut(s) 598
XmaI CCCGGG 1 cut(s) 695
XspI CTAG 2 cut(s) 239, 459
ZrmI AGTACT 1 cut(s) 392
Zsp2I ATGCAT 2 cut(s) 561, 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.