Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003382.1

Orthogroup ID

OG0004536

Physical Location & Seq

Genomic Coordinates Reverse (-)

105507 .. 106493

Gene Structure 987 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003382.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atggatgagaccgccccaacattctcccgtagacttgaagataatgattattttgacctctctgtctttgaaattgacaagtttgaaattccagtgtatggcattttcaactgtgatccagcctccttaagagggtatggtaatgtaaagctgacatgcttgtatatgacatggttgggtgtttggcagagtgacctatgtgtgcttgacatacccagcaaggatttggatctagaagcgattgcgaatgtagattctcttttggaagaagattttgtgaaacagtatccgacgttttttgaggagctgcaacttatgaagaagctgaagatgaaggcgaatcgtgaggctttggagcaatttgggcgcacttgtttgtccaagtactatttaccatacaagttgtggtatcttttgatggcggaccgcataaaaagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000706 GO:0000729 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003916 GO:0003918 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0016889 GO:0016894 GO:0017111 GO:0022402 GO:0022414 GO:0030957 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0035825 GO:0042138 GO:0042623 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046983 GO:0048285 GO:0050896 GO:0051321 GO:0051716 GO:0061505 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

TP6A_N

Protein Analysis

146

Amino Acids

17.2

Weight (kDa)

4.64

Isoelectric Point (pI)

45.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004536)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43731 FvH4_3g43753
rosa_chinensis	RchiOBHm_Chr2g0086091 RchiOBHm_Chr2g0089291 RchiOBHm_Chr2g0089851 RchiOBHm_Chr5g0083311
rosa_laevigata	RLG00000015741 RLG00000016061 RLG00000017209
rosa_multiflora	Rmu_co8293021.1_g000001 Rmu_co8360049.1_g000001 Rmu_sc0000388.1_g000047 Rmu_sc0002384.1_g000009 Rmu_sc0003382.1_g000021 Rmu_sc0017765.1_g000002 Rmu_ssc0000355.1_g000016
rosa_roxburghii	Rroxscaffold_2G00140180 Rroxscaffold_2G00151540
rosa_rugosa	Rorug01G0465600 Rorug01G0488800 Rorug02G0003700
rosa_samantha	Rh2AG015000 Rh2AG045100 Rh2AG048900 Rh2BG047800 Rh2CG016000 Rh2CG016100 Rh2CG045000 Rh2CG049900 Rh5BG561000 Rh5CG583600
rosa_wichuraiana	Rw2G001320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	62
AccB7I	CCANNNNNTGG	1 cut(s)	98
AccI	GTMKAC	1 cut(s)	31
AciI	CCGC	3 cut(s)	12, 422, 427
AclWI	GGATC	2 cut(s)	110, 237
AcsI	RAATTY	1 cut(s)	87
AcuI	CTGAAG	1 cut(s)	347
AfaI	GTAC	1 cut(s)	386
AfiI	CCNNNNNNNGG	2 cut(s)	98, 132
AflII	CTTAAG	1 cut(s)	127
AgsI	TTSAA	4 cut(s)	38, 71, 86, 109
AluBI	AGCT	4 cut(s)	151, 307, 325, 438
AluI	AGCT	4 cut(s)	151, 307, 325, 438
Alw26I	GTCTC	1 cut(s)	2
AlwI	GGATC	2 cut(s)	110, 237
ApeKI	GCWGC	1 cut(s)	307
ApoI	RAATTY	1 cut(s)	87
AspLEI	GCGC	1 cut(s)	369
AspS9I	GGNCC	1 cut(s)	424
AvaII	GGWCC	1 cut(s)	424
BbvI	GCAGC	1 cut(s)	294
BccI	CCATC	1 cut(s)	412
BciVI	GTATCC	1 cut(s)	297
BcoDI	GTCTC	1 cut(s)	2
BfaI	CTAG	1 cut(s)	233
BfrI	CTTAAG	1 cut(s)	127
BfuI	GTATCC	1 cut(s)	297
BisI	GCNGC	1 cut(s)	308
BlsI	GCNGC	1 cut(s)	309
BmcAI	AGTACT	1 cut(s)	386
Bme18I	GGWCC	1 cut(s)	424
BmgT120I	GGNCC	1 cut(s)	424
BsaBI	GATNNNNATC	1 cut(s)	228
BsaI	GGTCTC	1 cut(s)	2
Bsc4I	CCNNNNNNNGG	2 cut(s)	98, 132
Bse1I	ACTGG	1 cut(s)	92
Bse8I	GATNNNNATC	1 cut(s)	228
BseGI	GGATG	1 cut(s)	10
BseJI	GATNNNNATC	1 cut(s)	228
BseLI	CCNNNNNNNGG	2 cut(s)	98, 132
BseNI	ACTGG	1 cut(s)	92
BseRI	GAGGAG	1 cut(s)	317
BseXI	GCAGC	1 cut(s)	294
BseYI	CCCAGC	1 cut(s)	215
BslI	CCNNNNNNNGG	2 cut(s)	98, 132
BsmAI	GTCTC	1 cut(s)	2
Bso31I	GGTCTC	1 cut(s)	2
Bsp143I	GATC	2 cut(s)	115, 229
BspACI	CCGC	3 cut(s)	12, 422, 427
BspPI	GGATC	2 cut(s)	110, 237
BspTI	CTTAAG	1 cut(s)	127
BspTNI	GGTCTC	1 cut(s)	2
BsrI	ACTGG	1 cut(s)	92
BssMI	GATC	2 cut(s)	115, 229
Bst4CI	ACNGT	2 cut(s)	113, 285
BstAFI	CTTAAG	1 cut(s)	127
BstF5I	GGATG	1 cut(s)	10
BstHHI	GCGC	1 cut(s)	369
BstKTI	GATC	2 cut(s)	118, 232
BstMAI	GTCTC	1 cut(s)	2
BstMBI	GATC	2 cut(s)	115, 229
BstMWI	GCNNNNNNNGC	2 cut(s)	364, 435
BstNSI	RCATGY	1 cut(s)	159
BstV1I	GCAGC	1 cut(s)	294
BstX2I	RGATCY	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	229
BsuI	GTATCC	1 cut(s)	297
BtsCI	GGATG	1 cut(s)	10
BtsIMutI	CAGTG	1 cut(s)	99
CfoI	GCGC	1 cut(s)	369
Cfr13I	GGNCC	1 cut(s)	424
CpoI	CGGWCCG	1 cut(s)	424
Csp6I	GTAC	1 cut(s)	385
CspI	CGGWCCG	1 cut(s)	424
CviAII	CATG	2 cut(s)	156, 171
CviJI	RGCY	6 cut(s)	122, 151, 307, 325, 350, 438
CviKI_1	RGCY	6 cut(s)	122, 151, 307, 325, 350, 438
CviQI	GTAC	1 cut(s)	385
DpnI	GATC	2 cut(s)	117, 231
DpnII	GATC	2 cut(s)	115, 229
DrdI	GACNNNNNNGTC	1 cut(s)	62
DseDI	GACNNNNNNGTC	1 cut(s)	62
EciI	GGCGGA	1 cut(s)	437
Eco31I	GGTCTC	1 cut(s)	2
Eco47I	GGWCC	1 cut(s)	424
Eco57I	CTGAAG	1 cut(s)	347
FaeI	CATG	2 cut(s)	159, 174
FatI	CATG	2 cut(s)	155, 170
FblI	GTMKAC	1 cut(s)	31
Fnu4HI	GCNGC	1 cut(s)	308
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	1 cut(s)	308
FspBI	CTAG	1 cut(s)	233
GlaI	GCGC	1 cut(s)	368
GluI	GCNGC	1 cut(s)	308
GsaI	CCCAGC	1 cut(s)	219
HhaI	GCGC	1 cut(s)	369
Hin1II	CATG	2 cut(s)	159, 174
Hin6I	GCGC	1 cut(s)	367
HinP1I	GCGC	1 cut(s)	367
HinfI	GANTC	2 cut(s)	254, 340
Hpy166II	GTNNAC	1 cut(s)	32
Hpy188I	TCNGA	1 cut(s)	291
Hpy188III	TCNNGA	2 cut(s)	233, 344
Hpy8I	GTNNAC	1 cut(s)	32
Hpy99I	CGWCG	1 cut(s)	295
HpyAV	CCTTC	1 cut(s)	328
HpyCH4III	ACNGT	2 cut(s)	113, 285
HpyCH4IV	ACGT	1 cut(s)	293
HpyCH4V	TGCA	1 cut(s)	310
HpyF10VI	GCNNNNNNNGC	2 cut(s)	364, 435
HpySE526I	ACGT	1 cut(s)	293
Hsp92II	CATG	2 cut(s)	159, 174
HspAI	GCGC	1 cut(s)	367
Kzo9I	GATC	2 cut(s)	115, 229
LmnI	GCTCC	2 cut(s)	304, 355
LpnPI	CCDG	3 cut(s)	105, 132, 229
Lsp1109I	GCAGC	1 cut(s)	294
MaeI	CTAG	1 cut(s)	233
MaeII	ACGT	1 cut(s)	293
MaeIII	GTNAC	1 cut(s)	191
MalI	GATC	2 cut(s)	117, 231
MboI	GATC	2 cut(s)	115, 229
MboII	GAAGA	5 cut(s)	50, 278, 281, 331, 340
MflI	RGATCY	1 cut(s)	229
MluCI	AATT	3 cut(s)	72, 87, 359
MmeI	TCCRAC	1 cut(s)	314
MnlI	CCTC	5 cut(s)	68, 125, 133, 295, 340
MseI	TTAA	1 cut(s)	128
MspCI	CTTAAG	1 cut(s)	127
MwoI	GCNNNNNNNGC	2 cut(s)	364, 435
NdeII	GATC	2 cut(s)	115, 229
NlaIII	CATG	2 cut(s)	159, 174
NmuCI	GTSAC	1 cut(s)	191
NspI	RCATGY	1 cut(s)	159
PfeI	GAWTC	2 cut(s)	254, 340
PflMI	CCANNNNNTGG	1 cut(s)	98
PkrI	GCNGC	1 cut(s)	309
PspFI	CCCAGC	1 cut(s)	215
PspPI	GGNCC	1 cut(s)	424
PsuI	RGATCY	1 cut(s)	229
RsaI	GTAC	1 cut(s)	386
RsaNI	GTAC	1 cut(s)	385
Rsr2I	CGGWCCG	1 cut(s)	424
RsrII	CGGWCCG	1 cut(s)	424
SaqAI	TTAA	1 cut(s)	128
SatI	GCNGC	1 cut(s)	308
Sau3AI	GATC	2 cut(s)	115, 229
Sau96I	GGNCC	1 cut(s)	424
ScaI	AGTACT	1 cut(s)	386
SetI	ASST	7 cut(s)	60, 153, 198, 296, 309, 327, 440
SinI	GGWCC	1 cut(s)	424
SmlI	CTYRAG	1 cut(s)	127
SmoI	CTYRAG	1 cut(s)	127
Sse9I	AATT	3 cut(s)	72, 87, 359
SsiI	CCGC	3 cut(s)	12, 422, 427
SspMI	CTAG	1 cut(s)	233
TaaI	ACNGT	2 cut(s)	113, 285
TaiI	ACGT	1 cut(s)	296
TasI	AATT	3 cut(s)	72, 87, 359
TatI	WGTACW	1 cut(s)	384
TfiI	GAWTC	2 cut(s)	254, 340
Tru1I	TTAA	1 cut(s)	128
Tru9I	TTAA	1 cut(s)	128
TscAI	CASTG	1 cut(s)	99
TseFI	GTSAC	1 cut(s)	191
TseI	GCWGC	1 cut(s)	307
Tsp45I	GTSAC	1 cut(s)	191
TspDTI	ATGAA	2 cut(s)	332, 347
TspRI	CASTG	1 cut(s)	99
Van91I	CCANNNNNTGG	1 cut(s)	98
Vha464I	CTTAAG	1 cut(s)	127
VpaK11BI	GGWCC	1 cut(s)	424
XapI	RAATTY	1 cut(s)	87
XbaI	TCTAGA	1 cut(s)	232
XceI	RCATGY	1 cut(s)	159
XcmI	CCANNNNNNNNNTGG	2 cut(s)	223, 402
XmiI	GTMKAC	1 cut(s)	31
XspI	CTAG	1 cut(s)	233
ZrmI	AGTACT	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.