FvH4_3g44720

DNA (cytosine-5)-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0006538
Physical Location & Seq
Forward (+)
37235863 .. 37237384
1522 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g44720.t1

Sequence Viewer

Length: 375 bp
ATGATTGCCATACTTGATAGTGGGAATATTCATAAAGCTCCCAGATCAAGTTCTTTGCTTTCCAATCTCACAGATAACTGGCTCCTACTTGCTACTACAACACTCATTTGTGTATTTGCAGGTTATGTTGTTTATGACGCTGTAATGGCCACTGTGTCTGAGCTGCTGCAACGCTTGCTGGTGATTTCGCCTTTGCTGTTAGTGATTGTGGTTCATTGGCTATCCACAGGCAGCCAGGTCAACATTGGGATTCCAGGGTCTGAGCCAGGAGCTATCCACAGAGCTGGGGGATCACCTTGGGGTGTGGCCTTTGTTCTAGTACTGCTGTTCTTTCTCATATCGTATCAGCCTTCTTTCCTTGGCCTTCTTGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 ko01100 ko05206 map00270 map01100 map05206
Pfam Domains
Protein Families
BAH Chromo DNA_methylase

Protein Analysis

125

Amino Acids

13.27

Weight (kDa)

6.22

Isoelectric Point (pI)

48.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 110
AclWI GGATC 1 cut(s) 298
AcoI YGGCCR 1 cut(s) 147
AfaI GTAC 1 cut(s) 321
AjnI CCWGG 3 cut(s) 234, 253, 265
AluBI AGCT 4 cut(s) 38, 163, 272, 284
AluI AGCT 4 cut(s) 38, 163, 272, 284
AlwI GGATC 1 cut(s) 298
AlwNI CAGNNNCTG 1 cut(s) 260
AoxI GGCC 3 cut(s) 147, 306, 361
ApeKI GCWGC 3 cut(s) 163, 166, 231
AsuHPI GGTGA 2 cut(s) 193, 285
BalI TGGCCA 1 cut(s) 149
BbvI GCAGC 3 cut(s) 150, 153, 243
BciT130I CCWGG 3 cut(s) 236, 255, 267
BfaI CTAG 1 cut(s) 317
BfuAI ACCTGC 1 cut(s) 110
BisI GCNGC 3 cut(s) 164, 167, 232
BlsI GCNGC 3 cut(s) 165, 168, 233
BmcAI AGTACT 1 cut(s) 321
Bme1390I CCNGG 3 cut(s) 236, 255, 267
BmiI GGNNCC 1 cut(s) 83
BmrFI CCNGG 3 cut(s) 236, 255, 267
BsaJI CCNNGG 3 cut(s) 254, 296, 358
Bse1I ACTGG 1 cut(s) 83
BseBI CCWGG 3 cut(s) 236, 255, 267
BseDI CCNNGG 3 cut(s) 254, 296, 358
BseMII CTCAG 2 cut(s) 150, 252
BseNI ACTGG 1 cut(s) 83
BseXI GCAGC 3 cut(s) 150, 153, 243
BseYI CCCAGC 1 cut(s) 284
BshFI GGCC 3 cut(s) 149, 308, 363
BsnI GGCC 3 cut(s) 149, 308, 363
Bsp143I GATC 2 cut(s) 44, 290
BspANI GGCC 3 cut(s) 149, 308, 363
BspCNI CTCAG 2 cut(s) 151, 253
BspLI GGNNCC 1 cut(s) 83
BspMI ACCTGC 1 cut(s) 110
BspPI GGATC 1 cut(s) 298
BsrI ACTGG 1 cut(s) 83
BssECI CCNNGG 3 cut(s) 254, 296, 358
BssMI GATC 2 cut(s) 44, 290
BssT1I CCWWGG 2 cut(s) 296, 358
Bst2UI CCWGG 3 cut(s) 236, 255, 267
Bst4CI ACNGT 1 cut(s) 154
BstAPI GCANNNNNTGC 1 cut(s) 175
BstC8I GCNNGC 1 cut(s) 176
BstDEI CTNAG 2 cut(s) 159, 261
BstKTI GATC 2 cut(s) 47, 293
BstMBI GATC 2 cut(s) 44, 290
BstMWI GCNNNNNNNGC 2 cut(s) 146, 175
BstNI CCWGG 3 cut(s) 236, 255, 267
BstSCI CCNGG 3 cut(s) 234, 253, 265
BstV1I GCAGC 3 cut(s) 150, 153, 243
BstXI CCANNNNNNTGG 1 cut(s) 284
BsuRI GGCC 3 cut(s) 149, 308, 363
BtsIMutI CAGTG 1 cut(s) 150
BveI ACCTGC 1 cut(s) 110
Cac8I GCNNGC 1 cut(s) 176
CaiI CAGNNNCTG 1 cut(s) 260
CseI GACGC 1 cut(s) 146
Csp6I GTAC 1 cut(s) 320
CviQI GTAC 1 cut(s) 320
DdeI CTNAG 2 cut(s) 159, 261
DpnI GATC 2 cut(s) 46, 292
DpnII GATC 2 cut(s) 44, 290
EaeI YGGCCR 1 cut(s) 147
Eco130I CCWWGG 2 cut(s) 296, 358
EcoRII CCWGG 3 cut(s) 234, 253, 265
EcoT14I CCWWGG 2 cut(s) 296, 358
ErhI CCWWGG 2 cut(s) 296, 358
FaiI YATR 5 cut(s) 11, 33, 126, 135, 338
Fnu4HI GCNGC 3 cut(s) 164, 167, 232
Fsp4HI GCNGC 3 cut(s) 164, 167, 232
FspBI CTAG 1 cut(s) 317
GluI GCNGC 3 cut(s) 164, 167, 232
GsaI CCCAGC 1 cut(s) 288
HaeIII GGCC 3 cut(s) 149, 308, 363
HgaI GACGC 1 cut(s) 146
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HinfI GANTC 1 cut(s) 250
HphI GGTGA 2 cut(s) 193, 285
Hpy166II GTNNAC 1 cut(s) 241
Hpy188I TCNGA 2 cut(s) 160, 262
Hpy8I GTNNAC 1 cut(s) 241
HpyAV CCTTC 2 cut(s) 360, 374
HpyCH4III ACNGT 1 cut(s) 154
HpyCH4V TGCA 2 cut(s) 119, 169
HpyF10VI GCNNNNNNNGC 2 cut(s) 146, 175
HpyF3I CTNAG 2 cut(s) 159, 261
Kzo9I GATC 2 cut(s) 44, 290
LmnI GCTCC 3 cut(s) 43, 87, 269
Lsp1109I GCAGC 3 cut(s) 150, 153, 243
MaeI CTAG 1 cut(s) 317
MalI GATC 2 cut(s) 46, 292
MboI GATC 2 cut(s) 44, 290
MlsI TGGCCA 1 cut(s) 149
MluNI TGGCCA 1 cut(s) 149
Mox20I TGGCCA 1 cut(s) 149
MscI TGGCCA 1 cut(s) 149
Msp20I TGGCCA 1 cut(s) 149
MspR9I CCNGG 3 cut(s) 236, 255, 267
MvaI CCWGG 3 cut(s) 236, 255, 267
MwoI GCNNNNNNNGC 2 cut(s) 146, 175
NdeII GATC 2 cut(s) 44, 290
NlaIV GGNNCC 1 cut(s) 83
PfeI GAWTC 1 cut(s) 250
PkrI GCNGC 3 cut(s) 165, 168, 233
Psp6I CCWGG 3 cut(s) 234, 253, 265
PspFI CCCAGC 1 cut(s) 284
PspGI CCWGG 3 cut(s) 234, 253, 265
PspN4I GGNNCC 1 cut(s) 83
PstNI CAGNNNCTG 1 cut(s) 260
RsaI GTAC 1 cut(s) 321
RsaNI GTAC 1 cut(s) 320
SatI GCNGC 3 cut(s) 164, 167, 232
Sau3AI GATC 2 cut(s) 44, 290
ScaI AGTACT 1 cut(s) 321
ScrFI CCNGG 3 cut(s) 236, 255, 267
SetI ASST 7 cut(s) 40, 124, 165, 240, 274, 286, 298
SspI AATATT 1 cut(s) 28
SspMI CTAG 1 cut(s) 317
StyD4I CCNGG 3 cut(s) 234, 253, 265
StyI CCWWGG 2 cut(s) 296, 358
TaaI ACNGT 1 cut(s) 154
TatI WGTACW 1 cut(s) 319
TfiI GAWTC 1 cut(s) 250
TscAI CASTG 1 cut(s) 157
TseI GCWGC 3 cut(s) 163, 166, 231
TspDTI ATGAA 2 cut(s) 20, 203
TspRI CASTG 1 cut(s) 157
XcmI CCANNNNNNNNNTGG 1 cut(s) 242
XspI CTAG 1 cut(s) 317
ZrmI AGTACT 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.