Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0006538

Physical Location & Seq

Genomic Coordinates Forward (+)

86627887 .. 86629675

Gene Structure 1789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036929

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGCTTCAGCTCCCAGATCAAGCTCTTGGCTTTTCAACCTCACAGAGAACTGGCTCCTAATTGCTACTACAACACTCATCTGTGTATTTGCAGGTTATGTGGTTTACGATGCTGTAATGGCCACTGTGTCCGAGCTGCTGCATCGTTTGCTGGTGATTTCGCCTTTGCTTTTAGTGATTGTGGTTCATTGGCTCTCCACAGGCAGCCAGATCACCATTGGGATTCCAGGGTCTGAGCCTGAAGCTATCCACAGAGCTGGGGGATCACCTTGGGGTGTGGCCTTTGTTCTAAGGCTTCATCGCCACACCTTGTCATGGCTGCTTCGCCGGAGTAATGGAATCACCGCTGGAAGTGGTCGCCTTAACGGTCAAGCAGCGGCTTCGGAGGGGAGCAAACTCGCGGGCGGAGTCGTGAGTTTGGGGAGGGCAATGAGAGGGCTTAGGGTTTTGTTGAAGCCGAGAGCGGCGGTTCTGAGCGGGTCGGATCGGACTTGGGTTTGGAGTCTCGTACTCGATTTTAGTGATAGAGATTTCAGGAAGGCGGTTCGGGTTCTGAGAGAGGGGAGAGGGGCGGTGGTGAGAGCAAGTGACCCTATTGGGAGATGGGAGGTTGGGATCTGCTGCGGTGGAGCTCTGAGCTCTCAGAAAGGCAGCAACATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko05206 map00270 map01100 map05206

Pfam Domains

Protein Families

BAH Chromo DNA_methylase

Protein Analysis

221

Amino Acids

23.63

Weight (kDa)

10.95

Isoelectric Point (pI)

31.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006538)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19875
fragaria_vesca	FvH4_3g44720
malus_domestica	MD03G1010900.v1.1 MD11G1012700.v1.1
prunus_persica	Prupe.6G010800_v2.0.a1
pyrus_communis	pycom03g00970 pycom11g00830
rosa_chinensis	RchiOBHm_Chr5g0081381 RchiOBHm_Chr5g0081421
rosa_laevigata	RLG00000036929 RLG00000036933
rosa_multiflora	Rmu_co8325121.1_g000001 Rmu_sc0007768.1_g000016 Rmu_sc0007768.1_g000023 Rmu_sc0009187.1_g000006 Rmu_sc0009187.1_g000007 Rmu_sc0009187.1_g000011
rosa_rugosa	Rorug05G0476000 Rorug05G0476300
rosa_samantha	Rh5AG527500 Rh5AG527700 Rh5BG551800 Rh5BG552200 Rh5CG574600 Rh5CG574800 Rh5DG561800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	83
AccBSI	CCGCTC	2 cut(s)	464, 477
AccII	CGCG	1 cut(s)	401
AclWI	GGATC	3 cut(s)	271, 492, 623
AcoI	YGGCCR	1 cut(s)	120
AcuI	CTGAAG	1 cut(s)	261
AfaI	GTAC	1 cut(s)	510
AfiI	CCNNNNNNNGG	1 cut(s)	315
AflIII	ACRYGT	1 cut(s)	657
AgsI	TTSAA	2 cut(s)	37, 454
AjnI	CCWGG	1 cut(s)	226
AluBI	AGCT	7 cut(s)	11, 24, 136, 245, 257, 632, 639
AluI	AGCT	7 cut(s)	11, 24, 136, 245, 257, 632, 639
Alw21I	GWGCWC	2 cut(s)	634, 641
Alw26I	GTCTC	1 cut(s)	509
AlwI	GGATC	3 cut(s)	271, 492, 623
AlwNI	CAGNNNCTG	1 cut(s)	233
AoxI	GGCC	2 cut(s)	120, 279
ApeKI	GCWGC	7 cut(s)	136, 139, 204, 319, 374, 621, 651
AsuHPI	GGTGA	5 cut(s)	166, 205, 258, 334, 589
BalI	TGGCCA	1 cut(s)	122
BanII	GRGCYC	2 cut(s)	634, 641
Bbv12I	GWGCWC	2 cut(s)	634, 641
BbvI	GCAGC	6 cut(s)	123, 126, 216, 306, 386, 608
BccI	CCATC	1 cut(s)	597
BcgI	CGANNNNNNTGC	2 cut(s)	363, 397
BciT130I	CCWGG	1 cut(s)	228
BcoDI	GTCTC	1 cut(s)	509
BfuAI	ACCTGC	1 cut(s)	83
BisI	GCNGC	9 cut(s)	137, 140, 205, 320, 375, 378, 465, 622, 652
BlsI	GCNGC	9 cut(s)	138, 141, 206, 321, 376, 379, 466, 623, 653
Bme1390I	CCNGG	1 cut(s)	228
BmiI	GGNNCC	1 cut(s)	56
BmrFI	CCNGG	1 cut(s)	228
BmsI	GCATC	2 cut(s)	100, 151
Bpu10I	CCTNAGC	1 cut(s)	440
BsaJI	CCNNGG	2 cut(s)	227, 269
Bsc4I	CCNNNNNNNGG	1 cut(s)	315
Bse1I	ACTGG	1 cut(s)	56
Bse3DI	GCAATG	1 cut(s)	435
BseBI	CCWGG	1 cut(s)	228
BseDI	CCNNGG	2 cut(s)	227, 269
BseLI	CCNNNNNNNGG	1 cut(s)	315
BseMI	GCAATG	1 cut(s)	435
BseMII	CTCAG	5 cut(s)	225, 464, 545, 626, 656
BseNI	ACTGG	1 cut(s)	56
BseXI	GCAGC	6 cut(s)	123, 126, 216, 306, 386, 608
BseYI	CCCAGC	1 cut(s)	257
Bsh1236I	CGCG	1 cut(s)	401
BshFI	GGCC	2 cut(s)	122, 281
BsiHKAI	GWGCWC	2 cut(s)	634, 641
BsiSI	CCGG	1 cut(s)	328
BslI	CCNNNNNNNGG	1 cut(s)	315
BsmAI	GTCTC	1 cut(s)	509
BsnI	GGCC	2 cut(s)	122, 281
Bsp1286I	GDGCHC	2 cut(s)	634, 641
Bsp143I	GATC	5 cut(s)	17, 210, 263, 484, 615
BspANI	GGCC	2 cut(s)	122, 281
BspCNI	CTCAG	5 cut(s)	226, 465, 546, 627, 655
BspFNI	CGCG	1 cut(s)	401
BspLI	GGNNCC	1 cut(s)	56
BspMI	ACCTGC	1 cut(s)	83
BspPI	GGATC	3 cut(s)	271, 492, 623
BsrBI	CCGCTC	2 cut(s)	464, 477
BsrDI	GCAATG	1 cut(s)	435
BsrI	ACTGG	1 cut(s)	56
BssECI	CCNNGG	2 cut(s)	227, 269
BssMI	GATC	5 cut(s)	17, 210, 263, 484, 615
BssT1I	CCWWGG	1 cut(s)	269
Bst2UI	CCWGG	1 cut(s)	228
Bst4CI	ACNGT	2 cut(s)	127, 368
BstAPI	GCANNNNNTGC	1 cut(s)	148
BstC8I	GCNNGC	1 cut(s)	403
BstDEI	CTNAG	7 cut(s)	234, 290, 440, 473, 554, 635, 642
BstFNI	CGCG	1 cut(s)	401
BstKTI	GATC	5 cut(s)	20, 213, 266, 487, 618
BstMAI	GTCTC	1 cut(s)	509
BstMBI	GATC	5 cut(s)	17, 210, 263, 484, 615
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 148
BstNI	CCWGG	1 cut(s)	228
BstNSI	RCATGY	1 cut(s)	661
BstSCI	CCNGG	1 cut(s)	226
BstUI	CGCG	1 cut(s)	401
BstV1I	GCAGC	6 cut(s)	123, 126, 216, 306, 386, 608
BstX2I	RGATCY	1 cut(s)	615
BstXI	CCANNNNNNTGG	1 cut(s)	257
BstYI	RGATCY	1 cut(s)	615
BsuRI	GGCC	2 cut(s)	122, 281
BtgZI	GCGATG	1 cut(s)	284
BtsIMutI	CAGTG	1 cut(s)	123
BveI	ACCTGC	1 cut(s)	83
Cac8I	GCNNGC	1 cut(s)	403
CaiI	CAGNNNCTG	1 cut(s)	233
Csp6I	GTAC	1 cut(s)	509
CviAII	CATG	2 cut(s)	315, 658
CviQI	GTAC	1 cut(s)	509
DdeI	CTNAG	7 cut(s)	234, 290, 440, 473, 554, 635, 642
DpnI	GATC	5 cut(s)	19, 212, 265, 486, 617
DpnII	GATC	5 cut(s)	17, 210, 263, 484, 615
EaeI	YGGCCR	1 cut(s)	120
EciI	GGCGGA	1 cut(s)	420
Ecl136II	GAGCTC	2 cut(s)	632, 639
Eco130I	CCWWGG	1 cut(s)	269
Eco24I	GRGCYC	2 cut(s)	634, 641
Eco53kI	GAGCTC	2 cut(s)	632, 639
Eco57I	CTGAAG	1 cut(s)	261
EcoICRI	GAGCTC	2 cut(s)	632, 639
EcoRII	CCWGG	1 cut(s)	226
EcoT14I	CCWWGG	1 cut(s)	269
EcoT38I	GRGCYC	2 cut(s)	634, 641
ErhI	CCWWGG	1 cut(s)	269
FaeI	CATG	2 cut(s)	318, 661
FaiI	YATR	3 cut(s)	99, 316, 659
FatI	CATG	2 cut(s)	314, 657
FauI	CCCGC	2 cut(s)	394, 470
Fnu4HI	GCNGC	9 cut(s)	137, 140, 205, 320, 375, 378, 465, 622, 652
FriOI	GRGCYC	2 cut(s)	634, 641
Fsp4HI	GCNGC	9 cut(s)	137, 140, 205, 320, 375, 378, 465, 622, 652
GluI	GCNGC	9 cut(s)	137, 140, 205, 320, 375, 378, 465, 622, 652
GsaI	CCCAGC	1 cut(s)	261
HaeIII	GGCC	2 cut(s)	122, 281
HapII	CCGG	1 cut(s)	328
Hin1II	CATG	2 cut(s)	318, 661
HinfI	GANTC	4 cut(s)	223, 339, 408, 502
HpaII	CCGG	1 cut(s)	328
HphI	GGTGA	5 cut(s)	166, 205, 258, 334, 589
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188I	TCNGA	9 cut(s)	133, 235, 385, 474, 484, 489, 555, 636, 645
Hpy188III	TCNNGA	2 cut(s)	412, 535
Hpy8I	GTNNAC	1 cut(s)	106
HpyAV	CCTTC	1 cut(s)	532
HpyCH4III	ACNGT	2 cut(s)	127, 368
HpyCH4V	TGCA	2 cut(s)	92, 142
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 148
HpyF3I	CTNAG	7 cut(s)	234, 290, 440, 473, 554, 635, 642
Hsp92II	CATG	2 cut(s)	318, 661
Kzo9I	GATC	5 cut(s)	17, 210, 263, 484, 615
LmnI	GCTCC	4 cut(s)	16, 60, 390, 629
Lsp1109I	GCAGC	6 cut(s)	123, 126, 216, 306, 386, 608
LweI	GCATC	2 cut(s)	100, 151
MaeIII	GTNAC	1 cut(s)	587
MalI	GATC	5 cut(s)	19, 212, 265, 486, 617
MbiI	CCGCTC	2 cut(s)	464, 477
MboI	GATC	5 cut(s)	17, 210, 263, 484, 615
MflI	RGATCY	1 cut(s)	615
MhlI	GDGCHC	2 cut(s)	634, 641
MlsI	TGGCCA	1 cut(s)	122
MluCI	AATT	1 cut(s)	60
MluNI	TGGCCA	1 cut(s)	122
MlyI	GAGTC	2 cut(s)	417, 511
MmeI	TCCRAC	1 cut(s)	462
MnlI	CCTC	7 cut(s)	50, 379, 417, 428, 553, 560, 601
Mox20I	TGGCCA	1 cut(s)	122
MscI	TGGCCA	1 cut(s)	122
MseI	TTAA	1 cut(s)	363
Msp20I	TGGCCA	1 cut(s)	122
MspA1I	CMGCKG	2 cut(s)	347, 377
MspI	CCGG	1 cut(s)	328
MspR9I	CCNGG	1 cut(s)	228
MvaI	CCWGG	1 cut(s)	228
MvnI	CGCG	1 cut(s)	401
MwoI	GCNNNNNNNGC	2 cut(s)	119, 148
NdeII	GATC	5 cut(s)	17, 210, 263, 484, 615
NlaIII	CATG	2 cut(s)	318, 661
NlaIV	GGNNCC	1 cut(s)	56
NmeAIII	GCCGAG	1 cut(s)	483
NmuCI	GTSAC	1 cut(s)	587
NspI	RCATGY	1 cut(s)	661
PciI	ACATGT	1 cut(s)	657
PfeI	GAWTC	2 cut(s)	223, 339
PkrI	GCNGC	9 cut(s)	138, 141, 206, 321, 376, 379, 466, 623, 653
PleI	GAGTC	2 cut(s)	416, 510
PpsI	GAGTC	2 cut(s)	416, 510
PscI	ACATGT	1 cut(s)	657
Psp124BI	GAGCTC	2 cut(s)	634, 641
Psp6I	CCWGG	1 cut(s)	226
PspFI	CCCAGC	1 cut(s)	257
PspGI	CCWGG	1 cut(s)	226
PspN4I	GGNNCC	1 cut(s)	56
PstNI	CAGNNNCTG	1 cut(s)	233
PsuI	RGATCY	1 cut(s)	615
RsaI	GTAC	1 cut(s)	510
RsaNI	GTAC	1 cut(s)	509
SacI	GAGCTC	2 cut(s)	634, 641
SaqAI	TTAA	1 cut(s)	363
SatI	GCNGC	9 cut(s)	137, 140, 205, 320, 375, 378, 465, 622, 652
Sau3AI	GATC	5 cut(s)	17, 210, 263, 484, 615
SchI	GAGTC	2 cut(s)	417, 511
ScrFI	CCNGG	1 cut(s)	228
SduI	GDGCHC	2 cut(s)	634, 641
SfaNI	GCATC	2 cut(s)	100, 151
Sse9I	AATT	1 cut(s)	60
SstI	GAGCTC	2 cut(s)	634, 641
StyD4I	CCNGG	1 cut(s)	226
StyI	CCWWGG	1 cut(s)	269
TaaI	ACNGT	2 cut(s)	127, 368
TaqI	TCGA	1 cut(s)	513
TasI	AATT	1 cut(s)	60
TauI	GCSGC	2 cut(s)	380, 467
TfiI	GAWTC	2 cut(s)	223, 339
Tru1I	TTAA	1 cut(s)	363
Tru9I	TTAA	1 cut(s)	363
TscAI	CASTG	1 cut(s)	130
TseFI	GTSAC	1 cut(s)	587
TseI	GCWGC	7 cut(s)	136, 139, 204, 319, 374, 621, 651
Tsp45I	GTSAC	1 cut(s)	587
TspDTI	ATGAA	2 cut(s)	176, 287
TspRI	CASTG	1 cut(s)	130
XceI	RCATGY	1 cut(s)	661
XcmI	CCANNNNNNNNNTGG	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.