pycom11g00830

DNA (cytosine-5)-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0006538
Physical Location & Seq
Reverse (-)
608427 .. 608774
348 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g00830.1

Sequence Viewer

Length: 348 bp
ATGGCTTCAGCTCCTAGATCAAGCTCTTGGCTTCCAAGTCTCTCGGAGAATTGGCTCCCGATGGCTACTATAATACTCGTTTGCGGGTTTGTTGGTTACGCTGTTTACGACGCTGTGATGGCCACCGTGTCCGAGCTGCTGCAACGTTTGCTGGTAATTTCCCCTTTGCTTATAGTCATTGTAGTTCATTGGCTCTCCACAGGCAGCCAAGTTAGCATCAGCATTCCGGGGTCGGAGCCCGAAGCCATCCACAGAGCCGGAGGATCGCCTTGGGGCGTGGCCTTTCTACTATCTCTGCTCTTCTTTCTCATATCTTACCAGCCTTCCTTGTATGGCCTTCTTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 ko01100 ko05206 map00270 map01100 map05206
Pfam Domains
Protein Families
BAH Chromo DNA_methylase

Protein Analysis

116

Amino Acids

12.44

Weight (kDa)

5.41

Isoelectric Point (pI)

52.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 84
AclI AACGTT 1 cut(s) 145
AclWI GGATC 1 cut(s) 271
AcoI YGGCCR 1 cut(s) 120
AluBI AGCT 3 cut(s) 11, 24, 136
AluI AGCT 3 cut(s) 11, 24, 136
Alw26I GTCTC 1 cut(s) 44
AlwI GGATC 1 cut(s) 271
AoxI GGCC 3 cut(s) 120, 279, 334
ApeKI GCWGC 3 cut(s) 136, 139, 204
AsuC2I CCSGG 1 cut(s) 228
BalI TGGCCA 1 cut(s) 122
BanII GRGCYC 1 cut(s) 240
BbvI GCAGC 3 cut(s) 123, 126, 216
BccI CCATC 3 cut(s) 55, 112, 254
BcnI CCSGG 1 cut(s) 228
BcoDI GTCTC 1 cut(s) 44
BfaI CTAG 2 cut(s) 15, 346
BisI GCNGC 3 cut(s) 137, 140, 205
BlsI GCNGC 3 cut(s) 138, 141, 206
Bme1390I CCNGG 1 cut(s) 228
BmiI GGNNCC 2 cut(s) 56, 237
BmrFI CCNGG 1 cut(s) 228
BmsI GCATC 1 cut(s) 225
BpuMI CCSGG 1 cut(s) 228
BsaJI CCNNGG 2 cut(s) 227, 269
BseDI CCNNGG 2 cut(s) 227, 269
BseGI GGATG 1 cut(s) 246
BseXI GCAGC 3 cut(s) 123, 126, 216
BshFI GGCC 3 cut(s) 122, 281, 336
BsiSI CCGG 2 cut(s) 227, 258
BsmAI GTCTC 1 cut(s) 44
BsmI GAATGC 1 cut(s) 222
BsnI GGCC 3 cut(s) 122, 281, 336
Bsp1286I GDGCHC 1 cut(s) 240
Bsp143I GATC 2 cut(s) 17, 263
BspACI CCGC 1 cut(s) 84
BspANI GGCC 3 cut(s) 122, 281, 336
BspLI GGNNCC 2 cut(s) 56, 237
BspPI GGATC 1 cut(s) 271
BspQI GCTCTTC 1 cut(s) 305
BssECI CCNNGG 2 cut(s) 227, 269
BssMI GATC 2 cut(s) 17, 263
BssT1I CCWWGG 1 cut(s) 269
Bst4CI ACNGT 1 cut(s) 127
Bst6I CTCTTC 1 cut(s) 305
BstAPI GCANNNNNTGC 1 cut(s) 148
BstF5I GGATG 1 cut(s) 246
BstKTI GATC 2 cut(s) 20, 266
BstMAI GTCTC 1 cut(s) 44
BstMBI GATC 2 cut(s) 17, 263
BstMWI GCNNNNNNNGC 3 cut(s) 119, 148, 213
BstSCI CCNGG 1 cut(s) 226
BstV1I GCAGC 3 cut(s) 123, 126, 216
BsuRI GGCC 3 cut(s) 122, 281, 336
BtsCI GGATG 1 cut(s) 246
CseI GACGC 1 cut(s) 119
DpnI GATC 2 cut(s) 19, 265
DpnII GATC 2 cut(s) 17, 263
EaeI YGGCCR 1 cut(s) 120
Eam1104I CTCTTC 1 cut(s) 305
EarI CTCTTC 1 cut(s) 305
Eco130I CCWWGG 1 cut(s) 269
Eco24I GRGCYC 1 cut(s) 240
EcoT14I CCWWGG 1 cut(s) 269
EcoT38I GRGCYC 1 cut(s) 240
ErhI CCWWGG 1 cut(s) 269
FaiI YATR 4 cut(s) 71, 173, 311, 333
FauI CCCGC 1 cut(s) 77
Fnu4HI GCNGC 3 cut(s) 137, 140, 205
FokI GGATG 1 cut(s) 233
FriOI GRGCYC 1 cut(s) 240
Fsp4HI GCNGC 3 cut(s) 137, 140, 205
FspBI CTAG 2 cut(s) 15, 346
GluI GCNGC 3 cut(s) 137, 140, 205
HaeIII GGCC 3 cut(s) 122, 281, 336
HapII CCGG 2 cut(s) 227, 258
HgaI GACGC 1 cut(s) 119
HpaII CCGG 2 cut(s) 227, 258
Hpy166II GTNNAC 1 cut(s) 106
Hpy188I TCNGA 3 cut(s) 46, 133, 235
Hpy188III TCNNGA 1 cut(s) 58
Hpy8I GTNNAC 1 cut(s) 106
Hpy99I CGWCG 1 cut(s) 113
HpyAV CCTTC 2 cut(s) 333, 347
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4IV ACGT 1 cut(s) 145
HpyCH4V TGCA 1 cut(s) 142
HpyF10VI GCNNNNNNNGC 3 cut(s) 119, 148, 213
HpySE526I ACGT 1 cut(s) 145
Kzo9I GATC 2 cut(s) 17, 263
LguI GCTCTTC 1 cut(s) 305
LmnI GCTCC 3 cut(s) 16, 60, 235
LpnPI CCDG 5 cut(s) 137, 186, 240, 271, 332
Lsp1109I GCAGC 3 cut(s) 123, 126, 216
LweI GCATC 1 cut(s) 225
MaeI CTAG 2 cut(s) 15, 346
MaeII ACGT 1 cut(s) 145
MaeIII GTNAC 1 cut(s) 95
MalI GATC 2 cut(s) 19, 265
MboI GATC 2 cut(s) 17, 263
MboII GAAGA 1 cut(s) 292
MhlI GDGCHC 1 cut(s) 240
MlsI TGGCCA 1 cut(s) 122
MluCI AATT 2 cut(s) 49, 156
MluNI TGGCCA 1 cut(s) 122
MmeI TCCRAC 1 cut(s) 213
MnlI CCTC 1 cut(s) 254
Mox20I TGGCCA 1 cut(s) 122
MscI TGGCCA 1 cut(s) 122
Msp20I TGGCCA 1 cut(s) 122
MspI CCGG 2 cut(s) 227, 258
MspR9I CCNGG 1 cut(s) 228
Mva1269I GAATGC 1 cut(s) 222
MwoI GCNNNNNNNGC 3 cut(s) 119, 148, 213
NciI CCSGG 1 cut(s) 228
NdeII GATC 2 cut(s) 17, 263
NlaIV GGNNCC 2 cut(s) 56, 237
PciSI GCTCTTC 1 cut(s) 305
PcsI WCGNNNNNNNCGW 1 cut(s) 105
PctI GAATGC 1 cut(s) 222
PkrI GCNGC 3 cut(s) 138, 141, 206
Psp1406I AACGTT 1 cut(s) 145
PspN4I GGNNCC 2 cut(s) 56, 237
SapI GCTCTTC 1 cut(s) 305
SatI GCNGC 3 cut(s) 137, 140, 205
Sau3AI GATC 2 cut(s) 17, 263
ScrFI CCNGG 1 cut(s) 228
SduI GDGCHC 1 cut(s) 240
SetI ASST 4 cut(s) 13, 26, 138, 148
SfaNI GCATC 1 cut(s) 225
Sse9I AATT 2 cut(s) 49, 156
SsiI CCGC 1 cut(s) 84
SspMI CTAG 2 cut(s) 15, 346
StyD4I CCNGG 1 cut(s) 226
StyI CCWWGG 1 cut(s) 269
TaaI ACNGT 1 cut(s) 127
TaiI ACGT 1 cut(s) 148
TasI AATT 2 cut(s) 49, 156
TseI GCWGC 3 cut(s) 136, 139, 204
TspDTI ATGAA 1 cut(s) 176
XspI CTAG 2 cut(s) 15, 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.