Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0006538

Physical Location & Seq

Genomic Coordinates Reverse (-)

926135 .. 926482

Gene Structure 348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1012700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGCTTCTGCTCCCAGATCAAGCTCTTGGTTTTCCAGTCTCTCGGAGAATTGGCTCCCGATGGCTACTATAATACTCGTTTGCGGGTTTGTTGGTTACGCTGTTTACGACGCTGTGATGGCCACAGTGTCCGAGCTGCTGCAACGTTTGCTGGTAATTTCCCCTTTGCTTATAGTCATTGTAGTTCATTGGCTCTCCACAGGCAGCCAAGTTAGCATCAGCATTCCGGGGTCGGAGCCCGAAGCCATCCACAGAGCCGGAGGATCGCCTTGGGGCGTGGCCTTTCTACTATTTCTGCTCTTCTTTCTCATATCTTACCAGCCTTCCTTGCATGGCCTTCTTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko05206 map00270 map01100 map05206

Pfam Domains

Protein Families

BAH Chromo DNA_methylase

Protein Analysis

116

Amino Acids

12.49

Weight (kDa)

5.77

Isoelectric Point (pI)

49.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006538)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19875
fragaria_vesca	FvH4_3g44720
malus_domestica	MD03G1010900.v1.1 MD11G1012700.v1.1
prunus_persica	Prupe.6G010800_v2.0.a1
pyrus_communis	pycom03g00970 pycom11g00830
rosa_chinensis	RchiOBHm_Chr5g0081381 RchiOBHm_Chr5g0081421
rosa_laevigata	RLG00000036929 RLG00000036933
rosa_multiflora	Rmu_co8325121.1_g000001 Rmu_sc0007768.1_g000016 Rmu_sc0007768.1_g000023 Rmu_sc0009187.1_g000006 Rmu_sc0009187.1_g000007 Rmu_sc0009187.1_g000011
rosa_rugosa	Rorug05G0476000 Rorug05G0476300
rosa_samantha	Rh5AG527500 Rh5AG527700 Rh5BG551800 Rh5BG552200 Rh5CG574600 Rh5CG574800 Rh5DG561800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	84
AclI	AACGTT	1 cut(s)	145
AclWI	GGATC	1 cut(s)	271
AcoI	YGGCCR	1 cut(s)	120
AluBI	AGCT	2 cut(s)	24, 136
AluI	AGCT	2 cut(s)	24, 136
Alw26I	GTCTC	1 cut(s)	44
AlwI	GGATC	1 cut(s)	271
AoxI	GGCC	3 cut(s)	120, 279, 334
ApeKI	GCWGC	3 cut(s)	136, 139, 204
AsuC2I	CCSGG	1 cut(s)	228
BalI	TGGCCA	1 cut(s)	122
BanII	GRGCYC	1 cut(s)	240
BbvI	GCAGC	3 cut(s)	123, 126, 216
BccI	CCATC	3 cut(s)	55, 112, 254
BcnI	CCSGG	1 cut(s)	228
BcoDI	GTCTC	1 cut(s)	44
BfaI	CTAG	1 cut(s)	346
BisI	GCNGC	3 cut(s)	137, 140, 205
BlsI	GCNGC	3 cut(s)	138, 141, 206
Bme1390I	CCNGG	1 cut(s)	228
BmiI	GGNNCC	2 cut(s)	56, 237
BmrFI	CCNGG	1 cut(s)	228
BmsI	GCATC	1 cut(s)	225
BpuMI	CCSGG	1 cut(s)	228
BsaJI	CCNNGG	2 cut(s)	227, 269
Bse1I	ACTGG	1 cut(s)	36
BseDI	CCNNGG	2 cut(s)	227, 269
BseGI	GGATG	1 cut(s)	246
BseNI	ACTGG	1 cut(s)	36
BseXI	GCAGC	3 cut(s)	123, 126, 216
BshFI	GGCC	3 cut(s)	122, 281, 336
BsiSI	CCGG	2 cut(s)	227, 258
BsmAI	GTCTC	1 cut(s)	44
BsmI	GAATGC	1 cut(s)	222
BsnI	GGCC	3 cut(s)	122, 281, 336
Bsp1286I	GDGCHC	1 cut(s)	240
Bsp143I	GATC	2 cut(s)	17, 263
BspACI	CCGC	1 cut(s)	84
BspANI	GGCC	3 cut(s)	122, 281, 336
BspLI	GGNNCC	2 cut(s)	56, 237
BspPI	GGATC	1 cut(s)	271
BspQI	GCTCTTC	1 cut(s)	305
BsrI	ACTGG	1 cut(s)	36
BssECI	CCNNGG	2 cut(s)	227, 269
BssMI	GATC	2 cut(s)	17, 263
BssT1I	CCWWGG	1 cut(s)	269
Bst4CI	ACNGT	1 cut(s)	127
Bst6I	CTCTTC	1 cut(s)	305
BstAPI	GCANNNNNTGC	1 cut(s)	148
BstF5I	GGATG	1 cut(s)	246
BstKTI	GATC	2 cut(s)	20, 266
BstMAI	GTCTC	1 cut(s)	44
BstMBI	GATC	2 cut(s)	17, 263
BstMWI	GCNNNNNNNGC	4 cut(s)	119, 148, 213, 328
BstSCI	CCNGG	1 cut(s)	226
BstV1I	GCAGC	3 cut(s)	123, 126, 216
BsuRI	GGCC	3 cut(s)	122, 281, 336
BtsCI	GGATG	1 cut(s)	246
BtsIMutI	CAGTG	1 cut(s)	132
CseI	GACGC	1 cut(s)	119
CviAII	CATG	1 cut(s)	332
DpnI	GATC	2 cut(s)	19, 265
DpnII	GATC	2 cut(s)	17, 263
EaeI	YGGCCR	1 cut(s)	120
Eam1104I	CTCTTC	1 cut(s)	305
EarI	CTCTTC	1 cut(s)	305
Eco130I	CCWWGG	1 cut(s)	269
Eco24I	GRGCYC	1 cut(s)	240
EcoT14I	CCWWGG	1 cut(s)	269
EcoT38I	GRGCYC	1 cut(s)	240
ErhI	CCWWGG	1 cut(s)	269
FaeI	CATG	1 cut(s)	335
FaiI	YATR	4 cut(s)	71, 173, 311, 333
FatI	CATG	1 cut(s)	331
FauI	CCCGC	1 cut(s)	77
Fnu4HI	GCNGC	3 cut(s)	137, 140, 205
FokI	GGATG	1 cut(s)	233
FriOI	GRGCYC	1 cut(s)	240
Fsp4HI	GCNGC	3 cut(s)	137, 140, 205
FspBI	CTAG	1 cut(s)	346
GluI	GCNGC	3 cut(s)	137, 140, 205
HaeIII	GGCC	3 cut(s)	122, 281, 336
HapII	CCGG	2 cut(s)	227, 258
HgaI	GACGC	1 cut(s)	119
Hin1II	CATG	1 cut(s)	335
HpaII	CCGG	2 cut(s)	227, 258
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188I	TCNGA	3 cut(s)	46, 133, 235
Hpy188III	TCNNGA	1 cut(s)	58
Hpy8I	GTNNAC	1 cut(s)	106
Hpy99I	CGWCG	1 cut(s)	113
HpyAV	CCTTC	2 cut(s)	333, 347
HpyCH4III	ACNGT	1 cut(s)	127
HpyCH4IV	ACGT	1 cut(s)	145
HpyCH4V	TGCA	2 cut(s)	142, 331
HpyF10VI	GCNNNNNNNGC	4 cut(s)	119, 148, 213, 328
HpySE526I	ACGT	1 cut(s)	145
Hsp92II	CATG	1 cut(s)	335
Kzo9I	GATC	2 cut(s)	17, 263
LguI	GCTCTTC	1 cut(s)	305
LmnI	GCTCC	3 cut(s)	16, 60, 235
LpnPI	CCDG	7 cut(s)	28, 49, 137, 186, 240, 271, 332
Lsp1109I	GCAGC	3 cut(s)	123, 126, 216
LweI	GCATC	1 cut(s)	225
MaeI	CTAG	1 cut(s)	346
MaeII	ACGT	1 cut(s)	145
MaeIII	GTNAC	1 cut(s)	95
MalI	GATC	2 cut(s)	19, 265
MboI	GATC	2 cut(s)	17, 263
MboII	GAAGA	1 cut(s)	292
MhlI	GDGCHC	1 cut(s)	240
MlsI	TGGCCA	1 cut(s)	122
MluCI	AATT	2 cut(s)	49, 156
MluNI	TGGCCA	1 cut(s)	122
MmeI	TCCRAC	1 cut(s)	213
MnlI	CCTC	1 cut(s)	254
Mox20I	TGGCCA	1 cut(s)	122
MscI	TGGCCA	1 cut(s)	122
Msp20I	TGGCCA	1 cut(s)	122
MspI	CCGG	2 cut(s)	227, 258
MspR9I	CCNGG	1 cut(s)	228
Mva1269I	GAATGC	1 cut(s)	222
MwoI	GCNNNNNNNGC	4 cut(s)	119, 148, 213, 328
NciI	CCSGG	1 cut(s)	228
NdeII	GATC	2 cut(s)	17, 263
NlaIII	CATG	1 cut(s)	335
NlaIV	GGNNCC	2 cut(s)	56, 237
PciSI	GCTCTTC	1 cut(s)	305
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PctI	GAATGC	1 cut(s)	222
PkrI	GCNGC	3 cut(s)	138, 141, 206
Psp1406I	AACGTT	1 cut(s)	145
PspN4I	GGNNCC	2 cut(s)	56, 237
SapI	GCTCTTC	1 cut(s)	305
SatI	GCNGC	3 cut(s)	137, 140, 205
Sau3AI	GATC	2 cut(s)	17, 263
ScrFI	CCNGG	1 cut(s)	228
SduI	GDGCHC	1 cut(s)	240
SetI	ASST	3 cut(s)	26, 138, 148
SfaNI	GCATC	1 cut(s)	225
Sse9I	AATT	2 cut(s)	49, 156
SsiI	CCGC	1 cut(s)	84
SspMI	CTAG	1 cut(s)	346
StyD4I	CCNGG	1 cut(s)	226
StyI	CCWWGG	1 cut(s)	269
TaaI	ACNGT	1 cut(s)	127
TaiI	ACGT	1 cut(s)	148
TasI	AATT	2 cut(s)	49, 156
TscAI	CASTG	1 cut(s)	132
TseI	GCWGC	3 cut(s)	136, 139, 204
TspDTI	ATGAA	1 cut(s)	176
TspRI	CASTG	1 cut(s)	132
XspI	CTAG	1 cut(s)	346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.