Rh5DG561800

DNA (cytosine-5)-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0006538
Physical Location & Seq
Forward (+)
86657353 .. 86657700
348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG561800.1

Sequence Viewer

Length: 348 bp
ATGGCTTCAGCTTCCAGATCAAGTTCTTTGCTTTTCAATCTCACAGATAACTGGCTCCTAATTGCTACTACGACACTCATCTCTGTATTTGCAGGTTATGTTGTTTACGATGCTGTAATGGCCACTATGTCCGAGCTGCTGCAACGTTTGCTGGTGATTTCGCCTTTGCTTTTAGTGATTGTGGTTCATTGGCTCTCCACAGGCAGCCAGGTCAACATTGGGATTCCGGGGTCTGAGCCGGGAGCTATCCACAGAGCTGGGGGATCACCTTGGGGTGTGGCCTTTGTTCTAGTACTGCTTTTCTTTCTCATATCGTATCAGCCTTCTTTCCTTGGCCTTCTTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 ko01100 ko05206 map00270 map01100 map05206
Pfam Domains
Protein Families
BAH Chromo DNA_methylase

Protein Analysis

115

Amino Acids

12.38

Weight (kDa)

5.98

Isoelectric Point (pI)

47.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 83
AclI AACGTT 1 cut(s) 145
AclWI GGATC 1 cut(s) 271
AcoI YGGCCR 1 cut(s) 120
AfaI GTAC 1 cut(s) 294
AgsI TTSAA 1 cut(s) 37
AjnI CCWGG 1 cut(s) 207
AluBI AGCT 4 cut(s) 11, 136, 245, 257
AluI AGCT 4 cut(s) 11, 136, 245, 257
AlwI GGATC 1 cut(s) 271
AoxI GGCC 3 cut(s) 120, 279, 334
ApeKI GCWGC 3 cut(s) 136, 139, 204
AsuC2I CCSGG 2 cut(s) 228, 240
AsuHPI GGTGA 2 cut(s) 166, 258
BalI TGGCCA 1 cut(s) 122
BbvI GCAGC 3 cut(s) 123, 126, 216
BciT130I CCWGG 1 cut(s) 209
BcnI CCSGG 2 cut(s) 228, 240
BfaI CTAG 2 cut(s) 290, 346
BfuAI ACCTGC 1 cut(s) 83
BisI GCNGC 3 cut(s) 137, 140, 205
BlsI GCNGC 3 cut(s) 138, 141, 206
BmcAI AGTACT 1 cut(s) 294
Bme1390I CCNGG 3 cut(s) 209, 228, 240
BmiI GGNNCC 1 cut(s) 56
BmrFI CCNGG 3 cut(s) 209, 228, 240
BmsI GCATC 1 cut(s) 100
BpuMI CCSGG 2 cut(s) 228, 240
BsaJI CCNNGG 3 cut(s) 227, 269, 331
Bse1I ACTGG 1 cut(s) 56
BseBI CCWGG 1 cut(s) 209
BseDI CCNNGG 3 cut(s) 227, 269, 331
BseMII CTCAG 1 cut(s) 225
BseNI ACTGG 1 cut(s) 56
BseXI GCAGC 3 cut(s) 123, 126, 216
BseYI CCCAGC 1 cut(s) 257
BshFI GGCC 3 cut(s) 122, 281, 336
BsiSI CCGG 2 cut(s) 227, 239
BsnI GGCC 3 cut(s) 122, 281, 336
Bsp143I GATC 2 cut(s) 17, 263
BspANI GGCC 3 cut(s) 122, 281, 336
BspCNI CTCAG 1 cut(s) 226
BspLI GGNNCC 1 cut(s) 56
BspMI ACCTGC 1 cut(s) 83
BspPI GGATC 1 cut(s) 271
BsrI ACTGG 1 cut(s) 56
BssECI CCNNGG 3 cut(s) 227, 269, 331
BssMI GATC 2 cut(s) 17, 263
BssT1I CCWWGG 2 cut(s) 269, 331
Bst2UI CCWGG 1 cut(s) 209
BstAPI GCANNNNNTGC 1 cut(s) 148
BstDEI CTNAG 1 cut(s) 234
BstKTI GATC 2 cut(s) 20, 266
BstMBI GATC 2 cut(s) 17, 263
BstMWI GCNNNNNNNGC 2 cut(s) 119, 148
BstNI CCWGG 1 cut(s) 209
BstSCI CCNGG 3 cut(s) 207, 226, 238
BstV1I GCAGC 3 cut(s) 123, 126, 216
BstXI CCANNNNNNTGG 1 cut(s) 257
BsuRI GGCC 3 cut(s) 122, 281, 336
BveI ACCTGC 1 cut(s) 83
Csp6I GTAC 1 cut(s) 293
CviQI GTAC 1 cut(s) 293
DdeI CTNAG 1 cut(s) 234
DpnI GATC 2 cut(s) 19, 265
DpnII GATC 2 cut(s) 17, 263
EaeI YGGCCR 1 cut(s) 120
Eco130I CCWWGG 2 cut(s) 269, 331
EcoRII CCWGG 1 cut(s) 207
EcoT14I CCWWGG 2 cut(s) 269, 331
ErhI CCWWGG 2 cut(s) 269, 331
FaiI YATR 3 cut(s) 99, 128, 311
Fnu4HI GCNGC 3 cut(s) 137, 140, 205
Fsp4HI GCNGC 3 cut(s) 137, 140, 205
FspBI CTAG 2 cut(s) 290, 346
GluI GCNGC 3 cut(s) 137, 140, 205
GsaI CCCAGC 1 cut(s) 261
HaeIII GGCC 3 cut(s) 122, 281, 336
HapII CCGG 2 cut(s) 227, 239
HincII GTYRAC 1 cut(s) 214
HindII GTYRAC 1 cut(s) 214
HinfI GANTC 1 cut(s) 223
HpaII CCGG 2 cut(s) 227, 239
HphI GGTGA 2 cut(s) 166, 258
Hpy166II GTNNAC 2 cut(s) 106, 214
Hpy188I TCNGA 2 cut(s) 133, 235
Hpy188III TCNNGA 1 cut(s) 15
Hpy8I GTNNAC 2 cut(s) 106, 214
HpyAV CCTTC 2 cut(s) 333, 347
HpyCH4IV ACGT 1 cut(s) 145
HpyCH4V TGCA 2 cut(s) 92, 142
HpyF10VI GCNNNNNNNGC 2 cut(s) 119, 148
HpyF3I CTNAG 1 cut(s) 234
HpySE526I ACGT 1 cut(s) 145
Kzo9I GATC 2 cut(s) 17, 263
LmnI GCTCC 2 cut(s) 60, 242
Lsp1109I GCAGC 3 cut(s) 123, 126, 216
LweI GCATC 1 cut(s) 100
MaeI CTAG 2 cut(s) 290, 346
MaeII ACGT 1 cut(s) 145
MalI GATC 2 cut(s) 19, 265
MboI GATC 2 cut(s) 17, 263
MlsI TGGCCA 1 cut(s) 122
MluCI AATT 1 cut(s) 60
MluNI TGGCCA 1 cut(s) 122
Mox20I TGGCCA 1 cut(s) 122
MscI TGGCCA 1 cut(s) 122
Msp20I TGGCCA 1 cut(s) 122
MspI CCGG 2 cut(s) 227, 239
MspR9I CCNGG 3 cut(s) 209, 228, 240
MvaI CCWGG 1 cut(s) 209
MwoI GCNNNNNNNGC 2 cut(s) 119, 148
NciI CCSGG 2 cut(s) 228, 240
NdeII GATC 2 cut(s) 17, 263
NlaIV GGNNCC 1 cut(s) 56
PfeI GAWTC 1 cut(s) 223
PkrI GCNGC 3 cut(s) 138, 141, 206
Psp1406I AACGTT 1 cut(s) 145
Psp6I CCWGG 1 cut(s) 207
PspFI CCCAGC 1 cut(s) 257
PspGI CCWGG 1 cut(s) 207
PspN4I GGNNCC 1 cut(s) 56
RsaI GTAC 1 cut(s) 294
RsaNI GTAC 1 cut(s) 293
SatI GCNGC 3 cut(s) 137, 140, 205
Sau3AI GATC 2 cut(s) 17, 263
ScaI AGTACT 1 cut(s) 294
ScrFI CCNGG 3 cut(s) 209, 228, 240
SetI ASST 8 cut(s) 13, 97, 138, 148, 213, 247, 259, 271
SfaNI GCATC 1 cut(s) 100
Sse9I AATT 1 cut(s) 60
SspMI CTAG 2 cut(s) 290, 346
StyD4I CCNGG 3 cut(s) 207, 226, 238
StyI CCWWGG 2 cut(s) 269, 331
TaiI ACGT 1 cut(s) 148
TasI AATT 1 cut(s) 60
TatI WGTACW 1 cut(s) 292
TfiI GAWTC 1 cut(s) 223
TseI GCWGC 3 cut(s) 136, 139, 204
TspDTI ATGAA 1 cut(s) 176
XcmI CCANNNNNNNNNTGG 1 cut(s) 215
XspI CTAG 2 cut(s) 290, 346
ZrmI AGTACT 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.