Prupe.6G010800_v2.0.a1

DNA (cytosine-5)-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0006538
Physical Location & Seq
Reverse (-)
798100 .. 798495
396 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G010800.1

Sequence Viewer

Length: 348 bp
ATGGCTTCAGCTCCCAGATCAAGTTCTTGGTTTTTCAATCTCTCAGAAAATTGGCTCCCAATGGCTACTATGATACTCATTTGTGGGTTTGTAGGTTACGTGGTTTACGACGCTGTAATGGCCACAGTATCCGAGCTGCTGCAACGTTTGCTGGTAATTTCTCCTTTGCTTATAGTCATTGTAGTTCATTGGCTCTCCACAGGCAGCCAAGTTAGCATTAGCATTCCAGGGTCTGAGCCTGGAGCCATCCACAGAGCAGGAGGCTCACCTTGGGGTGTGGCCTTTGTACTATTTCTGCTTTTCTTTCTCATTTCTTACCAACCTTCCTTGCATGGCCTTCTTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 ko01100 ko05206 map00270 map01100 map05206
Pfam Domains
Protein Families
BAH Chromo DNA_methylase

Protein Analysis

116

Amino Acids

12.56

Weight (kDa)

6.23

Isoelectric Point (pI)

43.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 145
AcoI YGGCCR 1 cut(s) 120
AfaI GTAC 1 cut(s) 288
AgsI TTSAA 1 cut(s) 37
AjnI CCWGG 2 cut(s) 226, 238
AluBI AGCT 2 cut(s) 11, 136
AluI AGCT 2 cut(s) 11, 136
AlwNI CAGNNNCTG 1 cut(s) 233
AoxI GGCC 3 cut(s) 120, 279, 334
ApeKI GCWGC 3 cut(s) 136, 139, 204
AsuHPI GGTGA 1 cut(s) 258
BalI TGGCCA 1 cut(s) 122
BbvI GCAGC 3 cut(s) 123, 126, 216
BccI CCATC 1 cut(s) 254
BciT130I CCWGG 2 cut(s) 228, 240
BciVI GTATCC 1 cut(s) 139
BfaI CTAG 1 cut(s) 346
BfuI GTATCC 1 cut(s) 139
BisI GCNGC 3 cut(s) 137, 140, 205
BlsI GCNGC 3 cut(s) 138, 141, 206
Bme1390I CCNGG 2 cut(s) 228, 240
BmiI GGNNCC 2 cut(s) 56, 244
BmrFI CCNGG 2 cut(s) 228, 240
BpmI CTGGAG 1 cut(s) 261
BsaAI YACGTR 1 cut(s) 100
BsaJI CCNNGG 2 cut(s) 227, 269
BseBI CCWGG 2 cut(s) 228, 240
BseDI CCNNGG 2 cut(s) 227, 269
BseGI GGATG 1 cut(s) 246
BseMII CTCAG 2 cut(s) 57, 225
BseXI GCAGC 3 cut(s) 123, 126, 216
BshFI GGCC 3 cut(s) 122, 281, 336
BsmI GAATGC 1 cut(s) 222
BsnI GGCC 3 cut(s) 122, 281, 336
Bsp143I GATC 1 cut(s) 17
BspANI GGCC 3 cut(s) 122, 281, 336
BspCNI CTCAG 2 cut(s) 56, 226
BspLI GGNNCC 2 cut(s) 56, 244
BssECI CCNNGG 2 cut(s) 227, 269
BssMI GATC 1 cut(s) 17
BssT1I CCWWGG 1 cut(s) 269
Bst2UI CCWGG 2 cut(s) 228, 240
Bst4CI ACNGT 1 cut(s) 127
BstAPI GCANNNNNTGC 1 cut(s) 148
BstBAI YACGTR 1 cut(s) 100
BstDEI CTNAG 2 cut(s) 43, 234
BstF5I GGATG 1 cut(s) 246
BstKTI GATC 1 cut(s) 20
BstMBI GATC 1 cut(s) 17
BstMWI GCNNNNNNNGC 3 cut(s) 119, 148, 213
BstNI CCWGG 2 cut(s) 228, 240
BstSCI CCNGG 2 cut(s) 226, 238
BstV1I GCAGC 3 cut(s) 123, 126, 216
BsuI GTATCC 1 cut(s) 139
BsuRI GGCC 3 cut(s) 122, 281, 336
BtsCI GGATG 1 cut(s) 246
CaiI CAGNNNCTG 1 cut(s) 233
CseI GACGC 1 cut(s) 119
Csp6I GTAC 1 cut(s) 287
CviAII CATG 1 cut(s) 332
CviQI GTAC 1 cut(s) 287
DdeI CTNAG 2 cut(s) 43, 234
DpnI GATC 1 cut(s) 19
DpnII GATC 1 cut(s) 17
EaeI YGGCCR 1 cut(s) 120
Eco130I CCWWGG 1 cut(s) 269
EcoRII CCWGG 2 cut(s) 226, 238
EcoT14I CCWWGG 1 cut(s) 269
ErhI CCWWGG 1 cut(s) 269
FaeI CATG 1 cut(s) 335
FaiI YATR 3 cut(s) 71, 173, 333
FatI CATG 1 cut(s) 331
Fnu4HI GCNGC 3 cut(s) 137, 140, 205
FokI GGATG 1 cut(s) 233
Fsp4HI GCNGC 3 cut(s) 137, 140, 205
FspBI CTAG 1 cut(s) 346
GluI GCNGC 3 cut(s) 137, 140, 205
GsuI CTGGAG 1 cut(s) 261
HaeIII GGCC 3 cut(s) 122, 281, 336
HgaI GACGC 1 cut(s) 119
Hin1II CATG 1 cut(s) 335
HphI GGTGA 1 cut(s) 258
Hpy166II GTNNAC 1 cut(s) 106
Hpy188I TCNGA 3 cut(s) 46, 133, 235
Hpy8I GTNNAC 1 cut(s) 106
Hpy99I CGWCG 1 cut(s) 113
HpyAV CCTTC 2 cut(s) 333, 347
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4IV ACGT 2 cut(s) 99, 145
HpyCH4V TGCA 2 cut(s) 142, 331
HpyF10VI GCNNNNNNNGC 3 cut(s) 119, 148, 213
HpyF3I CTNAG 2 cut(s) 43, 234
HpySE526I ACGT 2 cut(s) 99, 145
Hsp92II CATG 1 cut(s) 335
Kzo9I GATC 1 cut(s) 17
LmnI GCTCC 3 cut(s) 16, 60, 242
LpnPI CCDG 8 cut(s) 28, 137, 186, 213, 225, 240, 243, 252
Lsp1109I GCAGC 3 cut(s) 123, 126, 216
MaeI CTAG 1 cut(s) 346
MaeII ACGT 2 cut(s) 99, 145
MaeIII GTNAC 1 cut(s) 95
MalI GATC 1 cut(s) 19
MboI GATC 1 cut(s) 17
MlsI TGGCCA 1 cut(s) 122
MluCI AATT 2 cut(s) 49, 156
MluNI TGGCCA 1 cut(s) 122
MnlI CCTC 1 cut(s) 254
Mox20I TGGCCA 1 cut(s) 122
MscI TGGCCA 1 cut(s) 122
Msp20I TGGCCA 1 cut(s) 122
MspR9I CCNGG 2 cut(s) 228, 240
Mva1269I GAATGC 1 cut(s) 222
MvaI CCWGG 2 cut(s) 228, 240
MwoI GCNNNNNNNGC 3 cut(s) 119, 148, 213
NdeII GATC 1 cut(s) 17
NlaIII CATG 1 cut(s) 335
NlaIV GGNNCC 2 cut(s) 56, 244
PcsI WCGNNNNNNNCGW 1 cut(s) 105
PctI GAATGC 1 cut(s) 222
PkrI GCNGC 3 cut(s) 138, 141, 206
Ppu21I YACGTR 1 cut(s) 100
Psp1406I AACGTT 1 cut(s) 145
Psp6I CCWGG 2 cut(s) 226, 238
PspGI CCWGG 2 cut(s) 226, 238
PspN4I GGNNCC 2 cut(s) 56, 244
PstNI CAGNNNCTG 1 cut(s) 233
RsaI GTAC 1 cut(s) 288
RsaNI GTAC 1 cut(s) 287
SatI GCNGC 3 cut(s) 137, 140, 205
Sau3AI GATC 1 cut(s) 17
ScrFI CCNGG 2 cut(s) 228, 240
SetI ASST 7 cut(s) 13, 97, 102, 138, 148, 271, 325
Sse9I AATT 2 cut(s) 49, 156
SspMI CTAG 1 cut(s) 346
StyD4I CCNGG 2 cut(s) 226, 238
StyI CCWWGG 1 cut(s) 269
TaaI ACNGT 1 cut(s) 127
TaiI ACGT 2 cut(s) 102, 148
TasI AATT 2 cut(s) 49, 156
TatI WGTACW 1 cut(s) 286
TseI GCWGC 3 cut(s) 136, 139, 204
TspDTI ATGAA 1 cut(s) 176
XspI CTAG 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.