Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0006538

Physical Location & Seq

Genomic Coordinates Forward (+)

86662055 .. 86662878

Gene Structure 824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036933

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGCTTCAGCTTCCAGATCAAGTTCTTTGCTTTTCAATCTCACAGATAACTGGCTCCTAATTGCTACTACGACACTCATCTGTATATTTGCAGGTTATGTTGTTTACGACGCTGTAATGGCCACTATGTCCGAGCTGCTGCAACGTTTGCTGGTGATTTCGCCTTTGCTTTTAGTGATTGTGGTTCATTGGCTCTCCACAGGCAGCCAGGTCAACATTGGGATTCCGGGGTCTGAGCCGGGAGCTATCCACAGAGCTGGGGGATCACCTTGGGGTGTGGCCTTTGTTCTAAGTTTGTTACAATTTCTGGTGACCTTTAATGGGTTGGGTCCTGACCATCCGTACTGCTCTGGTGGGCCTGCTTTAACTTATGGCCAAAAGTCACGTGCTGCTGACACCTCTGACACGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko05206 map00270 map01100 map05206

Pfam Domains

Protein Families

BAH Chromo DNA_methylase

Protein Analysis

138

Amino Acids

14.49

Weight (kDa)

5.76

Isoelectric Point (pI)

39.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006538)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19875
fragaria_vesca	FvH4_3g44720
malus_domestica	MD03G1010900.v1.1 MD11G1012700.v1.1
prunus_persica	Prupe.6G010800_v2.0.a1
pyrus_communis	pycom03g00970 pycom11g00830
rosa_chinensis	RchiOBHm_Chr5g0081381 RchiOBHm_Chr5g0081421
rosa_laevigata	RLG00000036929 RLG00000036933
rosa_multiflora	Rmu_co8325121.1_g000001 Rmu_sc0007768.1_g000016 Rmu_sc0007768.1_g000023 Rmu_sc0009187.1_g000006 Rmu_sc0009187.1_g000007 Rmu_sc0009187.1_g000011
rosa_rugosa	Rorug05G0476000 Rorug05G0476300
rosa_samantha	Rh5AG527500 Rh5AG527700 Rh5BG551800 Rh5BG552200 Rh5CG574600 Rh5CG574800 Rh5DG561800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	83
AclI	AACGTT	1 cut(s)	145
AclWI	GGATC	1 cut(s)	271
AcoI	YGGCCR	2 cut(s)	120, 373
AcvI	CACGTG	2 cut(s)	386, 408
AfaI	GTAC	1 cut(s)	344
AfiI	CCNNNNNNNGG	1 cut(s)	321
AflIII	ACRYGT	2 cut(s)	405, 407
AgsI	TTSAA	1 cut(s)	37
AjnI	CCWGG	1 cut(s)	207
AluBI	AGCT	4 cut(s)	11, 136, 245, 257
AluI	AGCT	4 cut(s)	11, 136, 245, 257
AlwI	GGATC	1 cut(s)	271
AoxI	GGCC	4 cut(s)	120, 279, 356, 373
ApeKI	GCWGC	4 cut(s)	136, 139, 204, 389
AspS9I	GGNCC	2 cut(s)	329, 356
AsuC2I	CCSGG	2 cut(s)	228, 240
AsuHPI	GGTGA	3 cut(s)	166, 258, 322
AvaII	GGWCC	1 cut(s)	329
BalI	TGGCCA	2 cut(s)	122, 375
BbrPI	CACGTG	2 cut(s)	386, 408
BbvI	GCAGC	4 cut(s)	123, 126, 216, 376
BccI	CCATC	1 cut(s)	345
BciT130I	CCWGG	1 cut(s)	209
BcnI	CCSGG	2 cut(s)	228, 240
BfuAI	ACCTGC	1 cut(s)	83
BisI	GCNGC	4 cut(s)	137, 140, 205, 390
BlsI	GCNGC	4 cut(s)	138, 141, 206, 391
Bme1390I	CCNGG	3 cut(s)	209, 228, 240
Bme18I	GGWCC	1 cut(s)	329
BmgT120I	GGNCC	2 cut(s)	329, 356
BmiI	GGNNCC	2 cut(s)	56, 330
BmrFI	CCNGG	3 cut(s)	209, 228, 240
BpuMI	CCSGG	2 cut(s)	228, 240
BsaAI	YACGTR	2 cut(s)	386, 408
BsaJI	CCNNGG	2 cut(s)	227, 269
Bsc4I	CCNNNNNNNGG	1 cut(s)	321
Bse1I	ACTGG	1 cut(s)	56
BseBI	CCWGG	1 cut(s)	209
BseDI	CCNNGG	2 cut(s)	227, 269
BseGI	GGATG	1 cut(s)	337
BseLI	CCNNNNNNNGG	1 cut(s)	321
BseMII	CTCAG	1 cut(s)	225
BseNI	ACTGG	1 cut(s)	56
BseXI	GCAGC	4 cut(s)	123, 126, 216, 376
BseYI	CCCAGC	1 cut(s)	257
BshFI	GGCC	4 cut(s)	122, 281, 358, 375
BsiSI	CCGG	2 cut(s)	227, 239
BslI	CCNNNNNNNGG	1 cut(s)	321
BsnI	GGCC	4 cut(s)	122, 281, 358, 375
Bsp143I	GATC	2 cut(s)	17, 263
BspANI	GGCC	4 cut(s)	122, 281, 358, 375
BspCNI	CTCAG	1 cut(s)	226
BspLI	GGNNCC	2 cut(s)	56, 330
BspMI	ACCTGC	1 cut(s)	83
BspPI	GGATC	1 cut(s)	271
BsrI	ACTGG	1 cut(s)	56
BssECI	CCNNGG	2 cut(s)	227, 269
BssMI	GATC	2 cut(s)	17, 263
BssT1I	CCWWGG	1 cut(s)	269
Bst2UI	CCWGG	1 cut(s)	209
BstAPI	GCANNNNNTGC	1 cut(s)	148
BstBAI	YACGTR	2 cut(s)	386, 408
BstC8I	GCNNGC	1 cut(s)	360
BstDEI	CTNAG	2 cut(s)	234, 290
BstEII	GGTNACC	1 cut(s)	310
BstF5I	GGATG	1 cut(s)	337
BstKTI	GATC	2 cut(s)	20, 266
BstMBI	GATC	2 cut(s)	17, 263
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 148
BstNI	CCWGG	1 cut(s)	209
BstPI	GGTNACC	1 cut(s)	310
BstSCI	CCNGG	3 cut(s)	207, 226, 238
BstV1I	GCAGC	4 cut(s)	123, 126, 216, 376
BstXI	CCANNNNNNTGG	1 cut(s)	257
BsuRI	GGCC	4 cut(s)	122, 281, 358, 375
BtsCI	GGATG	1 cut(s)	337
BveI	ACCTGC	1 cut(s)	83
Cac8I	GCNNGC	1 cut(s)	360
Cfr13I	GGNCC	2 cut(s)	329, 356
CseI	GACGC	1 cut(s)	119
Csp6I	GTAC	1 cut(s)	343
CviQI	GTAC	1 cut(s)	343
DdeI	CTNAG	2 cut(s)	234, 290
DpnI	GATC	2 cut(s)	19, 265
DpnII	GATC	2 cut(s)	17, 263
EaeI	YGGCCR	2 cut(s)	120, 373
Eco130I	CCWWGG	1 cut(s)	269
Eco47I	GGWCC	1 cut(s)	329
Eco72I	CACGTG	2 cut(s)	386, 408
Eco91I	GGTNACC	1 cut(s)	310
EcoO109I	RGGNCCY	1 cut(s)	329
EcoO65I	GGTNACC	1 cut(s)	310
EcoRII	CCWGG	1 cut(s)	207
EcoT14I	CCWWGG	1 cut(s)	269
ErhI	CCWWGG	1 cut(s)	269
FaiI	YATR	4 cut(s)	86, 99, 128, 372
Fnu4HI	GCNGC	4 cut(s)	137, 140, 205, 390
FokI	GGATG	1 cut(s)	324
Fsp4HI	GCNGC	4 cut(s)	137, 140, 205, 390
GluI	GCNGC	4 cut(s)	137, 140, 205, 390
GsaI	CCCAGC	1 cut(s)	261
HaeIII	GGCC	4 cut(s)	122, 281, 358, 375
HapII	CCGG	2 cut(s)	227, 239
HgaI	GACGC	1 cut(s)	119
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HinfI	GANTC	1 cut(s)	223
HpaII	CCGG	2 cut(s)	227, 239
HphI	GGTGA	3 cut(s)	166, 258, 322
Hpy166II	GTNNAC	2 cut(s)	106, 214
Hpy188I	TCNGA	3 cut(s)	133, 235, 403
Hpy188III	TCNNGA	2 cut(s)	15, 332
Hpy8I	GTNNAC	2 cut(s)	106, 214
Hpy99I	CGWCG	1 cut(s)	113
HpyCH4IV	ACGT	3 cut(s)	145, 385, 407
HpyCH4V	TGCA	2 cut(s)	92, 142
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 148
HpyF3I	CTNAG	2 cut(s)	234, 290
HpySE526I	ACGT	3 cut(s)	145, 385, 407
Kzo9I	GATC	2 cut(s)	17, 263
LmnI	GCTCC	2 cut(s)	60, 242
Lsp1109I	GCAGC	4 cut(s)	123, 126, 216, 376
MaeII	ACGT	3 cut(s)	145, 385, 407
MaeIII	GTNAC	3 cut(s)	297, 310, 381
MalI	GATC	2 cut(s)	19, 265
MboI	GATC	2 cut(s)	17, 263
MlsI	TGGCCA	2 cut(s)	122, 375
MluCI	AATT	2 cut(s)	60, 302
MluNI	TGGCCA	2 cut(s)	122, 375
MnlI	CCTC	1 cut(s)	409
Mox20I	TGGCCA	2 cut(s)	122, 375
MscI	TGGCCA	2 cut(s)	122, 375
MseI	TTAA	2 cut(s)	318, 365
Msp20I	TGGCCA	2 cut(s)	122, 375
MspI	CCGG	2 cut(s)	227, 239
MspR9I	CCNGG	3 cut(s)	209, 228, 240
MvaI	CCWGG	1 cut(s)	209
MwoI	GCNNNNNNNGC	2 cut(s)	119, 148
NciI	CCSGG	2 cut(s)	228, 240
NdeII	GATC	2 cut(s)	17, 263
NlaIV	GGNNCC	2 cut(s)	56, 330
NmuCI	GTSAC	2 cut(s)	310, 381
PfeI	GAWTC	1 cut(s)	223
PkrI	GCNGC	4 cut(s)	138, 141, 206, 391
PmaCI	CACGTG	2 cut(s)	386, 408
PmlI	CACGTG	2 cut(s)	386, 408
Ppu21I	YACGTR	2 cut(s)	386, 408
PpuMI	RGGWCCY	1 cut(s)	329
Psp1406I	AACGTT	1 cut(s)	145
Psp5II	RGGWCCY	1 cut(s)	329
Psp6I	CCWGG	1 cut(s)	207
PspCI	CACGTG	2 cut(s)	386, 408
PspEI	GGTNACC	1 cut(s)	310
PspFI	CCCAGC	1 cut(s)	257
PspGI	CCWGG	1 cut(s)	207
PspN4I	GGNNCC	2 cut(s)	56, 330
PspPI	GGNCC	2 cut(s)	329, 356
PspPPI	RGGWCCY	1 cut(s)	329
RsaI	GTAC	1 cut(s)	344
RsaNI	GTAC	1 cut(s)	343
SaqAI	TTAA	2 cut(s)	318, 365
SatI	GCNGC	4 cut(s)	137, 140, 205, 390
Sau3AI	GATC	2 cut(s)	17, 263
Sau96I	GGNCC	2 cut(s)	329, 356
ScrFI	CCNGG	3 cut(s)	209, 228, 240
SinI	GGWCC	1 cut(s)	329
Sse9I	AATT	2 cut(s)	60, 302
StyD4I	CCNGG	3 cut(s)	207, 226, 238
StyI	CCWWGG	1 cut(s)	269
TaiI	ACGT	3 cut(s)	148, 388, 410
TasI	AATT	2 cut(s)	60, 302
TfiI	GAWTC	1 cut(s)	223
Tru1I	TTAA	2 cut(s)	318, 365
Tru9I	TTAA	2 cut(s)	318, 365
TseFI	GTSAC	2 cut(s)	310, 381
TseI	GCWGC	4 cut(s)	136, 139, 204, 389
Tsp45I	GTSAC	2 cut(s)	310, 381
TspDTI	ATGAA	1 cut(s)	176
TspGWI	ACGGA	1 cut(s)	330
VpaK11BI	GGWCC	1 cut(s)	329
XcmI	CCANNNNNNNNNTGG	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.