FvH4_3g46070

Transcription factor Pur-alpha

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0011498
Physical Location & Seq
Forward (+)
38223857 .. 38228588
4732 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g46070.t2

Sequence Viewer

Length: 870 bp
ATGGAAGGGAATTCGGGAGGAGGAGGTGGCAGTGGCGGCGGCGGTGGAGGAAATGACGTGGAGCTGCTCTGTAAGACGCTTCAGGTTGAGCACAAGCTATTCTACTTCGATCTCAAAGAGAACCCTCGCGGTCGTTATCTCAAAATCTCTGAAAAGACTTCAGCCACCAGGTCCACCATCATCGTTCCCTTCTCCGGCATCTCATGGTTCCTCGATCTCTTCAATTACTATGTCAATTCGGAGGATCAGGATGTCTTCAGCAAGGAATTGCAGCTCGACACCAAGGTCTTCTACTTTGATATCGGCGAGAACCGCAGGGGCCGCTTCTTGAAGGTATCTGAAGCTTCTGTTAGTAGAAATCGAAGTACTATCATTGTTCCTGCAGGGAGCACCCGGGATGAAGGGTGGGCAGCATTTAGGAACATTTTGGCTGAGATCAATGAAGCATCAAGGCTTTTTATACTGCCTAATCAGCAAAGTTCTGAATCTTCAGAGCGACTTGTTGGGCTTTCAGATGATGTAGGCGCCGGCTTCATATCTGGCCACAGTAGCCAAACTGTGCCAACTTCTGAACTGAATGTTGACCGGTCCACAGAGTTGCCGGCTCAAGATGAAATCGGTAACATGGGGGTTTCTAAAGTGATTAGAGCTGATCAAAAGAGATTCTTCTTTGATCTTGGAAACAATAACAGGGGACATTTCCTAAGAATATCAGAGGTTGCAGGCTCTGATAGGTCATCCATAATTCTCCCACTGTCAGGGCTCAAACAGTTCCATGAAATAGTGGGTCATTTTGTGGAGATAACCAAAGACCGAATTGAAGGAATGACAGGTGCAAATGTTCGGACAGTCGATCCTCCTCAGAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0010035 GO:0010038 GO:0042221 GO:0044424 GO:0044464 GO:0046686 GO:0050896 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PurA

Protein Analysis

290

Amino Acids

31.88

Weight (kDa)

5.66

Isoelectric Point (pI)

49.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PurA PF04845 22 - 148 1.9e-20 PurA ssDNA and RNA-binding protein
PurA PF04845 205 - 267 3.7e-12 PurA ssDNA and RNA-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011498)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G32080 AT2G32080
fragaria_vesca FvH4_3g46070 FvH4_3g46070
malus_domestica MD03G1000100.v1.1 MD11G1000500.v1.1
prunus_persica Prupe.6G000600_v2.0.a1 Prupe.6G000600_v2.0.a1
pyrus_communis pycom03g00040 pycom11g00080
rosa_chinensis RchiOBHm_Chr5g0084131
rosa_laevigata RLG00000037085
rosa_multiflora Rmu_sc0035629.1_g000001
rosa_roxburghii Rroxscaffold_1G00000510
rosa_rugosa Rorug05G0489400
rosa_samantha Rh5AG542000 Rh5BG567800 Rh5CG589500 Rh5DG575900
rosa_wichuraiana Rw5G050420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 284
AccB1I GGYRCC 1 cut(s) 524
AccII CGCG 1 cut(s) 129
AciI CCGC 6 cut(s) 36, 39, 42, 129, 313, 322
AclWI GGATC 2 cut(s) 252, 848
AcoI YGGCCR 1 cut(s) 541
AcsI RAATTY 1 cut(s) 10
AcuI CTGAAG 5 cut(s) 65, 144, 241, 360, 474
AcyI GRCGYC 1 cut(s) 525
AfaI GTAC 1 cut(s) 367
AfiI CCNNNNNNNGG 2 cut(s) 194, 758
AgeI ACCGGT 1 cut(s) 585
AgsI TTSAA 3 cut(s) 223, 331, 821
AjiI CACGTC 1 cut(s) 58
AjnI CCWGG 1 cut(s) 167
AluBI AGCT 5 cut(s) 64, 97, 274, 344, 650
AluI AGCT 5 cut(s) 64, 97, 274, 344, 650
Alw21I GWGCWC 2 cut(s) 93, 392
AlwI GGATC 2 cut(s) 252, 848
AlwNI CAGNNNCTG 1 cut(s) 728
Ama87I CYCGRG 1 cut(s) 393
AoxI GGCC 2 cut(s) 319, 541
ApeKI GCWGC 3 cut(s) 64, 271, 410
ApoI RAATTY 1 cut(s) 10
AsiGI ACCGGT 1 cut(s) 585
AspLEI GCGC 1 cut(s) 527
AspS9I GGNCC 3 cut(s) 171, 319, 588
AsuC2I CCSGG 2 cut(s) 394, 395
AvaI CYCGRG 1 cut(s) 393
AvaII GGWCC 2 cut(s) 171, 588
BalI TGGCCA 1 cut(s) 543
BanI GGYRCC 1 cut(s) 524
BanII GRGCYC 1 cut(s) 765
BbsI GAAGAC 2 cut(s) 247, 280
Bbv12I GWGCWC 2 cut(s) 93, 392
BbvI GCAGC 3 cut(s) 51, 283, 422
BccI CCATC 1 cut(s) 185
BciT130I CCWGG 1 cut(s) 169
BclI TGATCA 1 cut(s) 652
BcnI CCSGG 2 cut(s) 394, 395
BfmI CTRYAG 1 cut(s) 381
BfoI RGCGCY 1 cut(s) 528
BisI GCNGC 6 cut(s) 37, 40, 65, 272, 322, 411
BlsI GCNGC 6 cut(s) 38, 41, 66, 273, 323, 412
BmcAI AGTACT 1 cut(s) 367
Bme1390I CCNGG 3 cut(s) 169, 394, 395
Bme18I GGWCC 2 cut(s) 171, 588
BmeT110I CYCGRG 1 cut(s) 393
BmgBI CACGTC 1 cut(s) 58
BmgT120I GGNCC 3 cut(s) 171, 319, 588
BmiI GGNNCC 3 cut(s) 209, 320, 526
BmrFI CCNGG 3 cut(s) 169, 394, 395
BmsI GCATC 2 cut(s) 207, 455
BpiI GAAGAC 2 cut(s) 247, 280
BpuEI CTTGAG 1 cut(s) 591
BpuMI CCSGG 2 cut(s) 394, 395
BsaHI GRCGYC 1 cut(s) 525
BsaJI CCNNGG 2 cut(s) 282, 393
BsaWI WCCGGW 1 cut(s) 585
Bsc4I CCNNNNNNNGG 2 cut(s) 194, 758
Bse118I RCCGGY 3 cut(s) 527, 585, 601
BseBI CCWGG 1 cut(s) 169
BseDI CCNNGG 2 cut(s) 282, 393
BseGI GGATG 3 cut(s) 256, 403, 737
BseLI CCNNNNNNNGG 2 cut(s) 194, 758
BseMII CTCAG 1 cut(s) 423
BseRI GAGGAG 3 cut(s) 33, 36, 849
BseXI GCAGC 3 cut(s) 51, 283, 422
Bsh1236I CGCG 1 cut(s) 129
Bsh1285I CGRYCG 1 cut(s) 133
BshFI GGCC 2 cut(s) 321, 543
BshNI GGYRCC 1 cut(s) 524
BshTI ACCGGT 1 cut(s) 585
BsiEI CGRYCG 1 cut(s) 133
BsiHKAI GWGCWC 2 cut(s) 93, 392
BsiHKCI CYCGRG 1 cut(s) 393
BsiSI CCGG 5 cut(s) 195, 394, 528, 586, 602
BslFI GGGAC 1 cut(s) 708
BslI CCNNNNNNNGG 2 cut(s) 194, 758
BsmFI GGGAC 1 cut(s) 708
BsnI GGCC 2 cut(s) 321, 543
BsoBI CYCGRG 1 cut(s) 393
Bsp1286I GDGCHC 3 cut(s) 93, 392, 765
Bsp143I GATC 7 cut(s) 109, 214, 244, 435, 652, 673, 853
BspACI CCGC 6 cut(s) 36, 39, 42, 129, 313, 322
BspANI GGCC 2 cut(s) 321, 543
BspCNI CTCAG 1 cut(s) 424
BspFNI CGCG 1 cut(s) 129
BspLI GGNNCC 3 cut(s) 209, 320, 526
BspMAI CTGCAG 1 cut(s) 385
BspPI GGATC 2 cut(s) 252, 848
BspT107I GGYRCC 1 cut(s) 524
BsrFI RCCGGY 3 cut(s) 527, 585, 601
BssAI RCCGGY 3 cut(s) 527, 585, 601
BssECI CCNNGG 2 cut(s) 282, 393
BssMI GATC 7 cut(s) 109, 214, 244, 435, 652, 673, 853
BssNI GRCGYC 1 cut(s) 525
BssT1I CCWWGG 1 cut(s) 282
Bst2UI CCWGG 1 cut(s) 169
Bst4CI ACNGT 5 cut(s) 548, 559, 756, 771, 850
Bst6I CTCTTC 1 cut(s) 224
BstACI GRCGYC 1 cut(s) 525
BstC8I GCNNGC 3 cut(s) 529, 603, 724
BstDEI CTNAG 3 cut(s) 432, 704, 861
BstF5I GGATG 3 cut(s) 256, 403, 737
BstFNI CGCG 1 cut(s) 129
BstH2I RGCGCY 1 cut(s) 528
BstHHI GCGC 1 cut(s) 527
BstKTI GATC 7 cut(s) 112, 217, 247, 438, 655, 676, 856
BstMBI GATC 7 cut(s) 109, 214, 244, 435, 652, 673, 853
BstMCI CGRYCG 1 cut(s) 133
BstMWI GCNNNNNNNGC 5 cut(s) 36, 312, 321, 472, 549
BstNI CCWGG 1 cut(s) 169
BstSCI CCNGG 3 cut(s) 167, 392, 393
BstSFI CTRYAG 1 cut(s) 381
BstUI CGCG 1 cut(s) 129
BstV1I GCAGC 3 cut(s) 51, 283, 422
BstV2I GAAGAC 2 cut(s) 247, 280
BsuRI GGCC 2 cut(s) 321, 543
BtrI CACGTC 1 cut(s) 58
BtsCI GGATG 3 cut(s) 256, 403, 737
BtsI GCAGTG 1 cut(s) 37
BtsIMutI CAGTG 2 cut(s) 37, 752
Cac8I GCNNGC 3 cut(s) 529, 603, 724
CaiI CAGNNNCTG 1 cut(s) 728
CfoI GCGC 1 cut(s) 527
Cfr10I RCCGGY 3 cut(s) 527, 585, 601
Cfr13I GGNCC 3 cut(s) 171, 319, 588
Cfr9I CCCGGG 1 cut(s) 393
CseI GACGC 1 cut(s) 85
CsiI ACCWGGT 1 cut(s) 167
Csp6I GTAC 1 cut(s) 366
CspAI ACCGGT 1 cut(s) 585
CviAII CATG 3 cut(s) 204, 625, 776
CviQI GTAC 1 cut(s) 366
DdeI CTNAG 3 cut(s) 432, 704, 861
DinI GGCGCC 1 cut(s) 526
DpnI GATC 7 cut(s) 111, 216, 246, 437, 654, 675, 855
DpnII GATC 7 cut(s) 109, 214, 244, 435, 652, 673, 853
DrdI GACNNNNNNGTC 1 cut(s) 284
DseDI GACNNNNNNGTC 1 cut(s) 284
EaeI YGGCCR 1 cut(s) 541
Eam1104I CTCTTC 1 cut(s) 224
EarI CTCTTC 1 cut(s) 224
Eco130I CCWWGG 1 cut(s) 282
Eco24I GRGCYC 1 cut(s) 765
Eco32I GATATC 1 cut(s) 301
Eco47I GGWCC 2 cut(s) 171, 588
Eco57I CTGAAG 5 cut(s) 65, 144, 241, 360, 474
Eco88I CYCGRG 1 cut(s) 393
EcoRI GAATTC 1 cut(s) 10
EcoRII CCWGG 1 cut(s) 167
EcoRV GATATC 1 cut(s) 301
EcoT14I CCWWGG 1 cut(s) 282
EcoT38I GRGCYC 1 cut(s) 765
EgeI GGCGCC 1 cut(s) 526
EheI GGCGCC 1 cut(s) 526
ErhI CCWWGG 1 cut(s) 282
FaeI CATG 3 cut(s) 207, 628, 779
FaiI YATR 7 cut(s) 205, 231, 461, 536, 626, 743, 777
FalI AAGNNNNNCTT 2 cut(s) 650, 682
FaqI GGGAC 1 cut(s) 708
FatI CATG 3 cut(s) 203, 624, 775
FbaI TGATCA 1 cut(s) 652
Fnu4HI GCNGC 6 cut(s) 37, 40, 65, 272, 322, 411
FokI GGATG 3 cut(s) 263, 410, 724
FriOI GRGCYC 1 cut(s) 765
Fsp4HI GCNGC 6 cut(s) 37, 40, 65, 272, 322, 411
GlaI GCGC 1 cut(s) 526
GluI GCNGC 6 cut(s) 37, 40, 65, 272, 322, 411
HaeII RGCGCY 1 cut(s) 528
HaeIII GGCC 2 cut(s) 321, 543
HapII CCGG 5 cut(s) 195, 394, 528, 586, 602
HgaI GACGC 1 cut(s) 85
HhaI GCGC 1 cut(s) 527
Hin1I GRCGYC 1 cut(s) 525
Hin1II CATG 3 cut(s) 207, 628, 779
Hin6I GCGC 1 cut(s) 525
HinP1I GCGC 1 cut(s) 525
HincII GTYRAC 1 cut(s) 583
HindII GTYRAC 1 cut(s) 583
HindIII AAGCTT 1 cut(s) 342
HinfI GANTC 2 cut(s) 485, 663
HpaII CCGG 5 cut(s) 195, 394, 528, 586, 602
Hpy166II GTNNAC 3 cut(s) 174, 583, 591
Hpy188III TCNNGA 4 cut(s) 15, 248, 328, 608
Hpy8I GTNNAC 3 cut(s) 174, 583, 591
HpyAV CCTTC 4 cut(s) 199, 325, 395, 815
HpyCH4III ACNGT 5 cut(s) 548, 559, 756, 771, 850
HpyCH4IV ACGT 1 cut(s) 57
HpyCH4V TGCA 4 cut(s) 271, 383, 722, 836
HpyF10VI GCNNNNNNNGC 5 cut(s) 36, 312, 321, 472, 549
HpyF3I CTNAG 3 cut(s) 432, 704, 861
HpySE526I ACGT 1 cut(s) 57
Hsp92I GRCGYC 1 cut(s) 525
Hsp92II CATG 3 cut(s) 207, 628, 779
HspAI GCGC 1 cut(s) 525
KasI GGCGCC 1 cut(s) 524
KroI GCCGGC 2 cut(s) 527, 601
KroNI GCCGGC 2 cut(s) 529, 603
Ksp22I TGATCA 1 cut(s) 652
Kzo9I GATC 7 cut(s) 109, 214, 244, 435, 652, 673, 853
LmnI GCTCC 2 cut(s) 61, 387
Lsp1109I GCAGC 3 cut(s) 51, 283, 422
LweI GCATC 2 cut(s) 207, 455
MabI ACCWGGT 1 cut(s) 167
MaeII ACGT 1 cut(s) 57
MaeIII GTNAC 1 cut(s) 620
MalI GATC 7 cut(s) 111, 216, 246, 437, 654, 675, 855
MboI GATC 7 cut(s) 109, 214, 244, 435, 652, 673, 853
MboII GAAGA 5 cut(s) 211, 247, 280, 480, 658
MhlI GDGCHC 3 cut(s) 93, 392, 765
MlsI TGGCCA 1 cut(s) 543
MluCI AATT 6 cut(s) 10, 223, 235, 266, 744, 816
MluNI TGGCCA 1 cut(s) 543
Mly113I GGCGCC 1 cut(s) 525
Mox20I TGGCCA 1 cut(s) 543
MroNI GCCGGC 2 cut(s) 527, 601
MscI TGGCCA 1 cut(s) 543
Msp20I TGGCCA 1 cut(s) 543
MspI CCGG 5 cut(s) 195, 394, 528, 586, 602
MspR9I CCNGG 3 cut(s) 169, 394, 395
MvaI CCWGG 1 cut(s) 169
MvnI CGCG 1 cut(s) 129
MwoI GCNNNNNNNGC 5 cut(s) 36, 312, 321, 472, 549
NaeI GCCGGC 2 cut(s) 529, 603
NarI GGCGCC 1 cut(s) 525
NciI CCSGG 2 cut(s) 394, 395
NdeII GATC 7 cut(s) 109, 214, 244, 435, 652, 673, 853
NgoMIV GCCGGC 2 cut(s) 527, 601
NlaIII CATG 3 cut(s) 207, 628, 779
NlaIV GGNNCC 3 cut(s) 209, 320, 526
PdiI GCCGGC 2 cut(s) 529, 603
PfeI GAWTC 2 cut(s) 485, 663
PinAI ACCGGT 1 cut(s) 585
PkrI GCNGC 6 cut(s) 38, 41, 66, 273, 323, 412
PluTI GGCGCC 1 cut(s) 528
Psp6I CCWGG 1 cut(s) 167
PspGI CCWGG 1 cut(s) 167
PspN4I GGNNCC 3 cut(s) 209, 320, 526
PspPI GGNCC 3 cut(s) 171, 319, 588
PstI CTGCAG 1 cut(s) 385
PstNI CAGNNNCTG 1 cut(s) 728
RsaI GTAC 1 cut(s) 367
RsaNI GTAC 1 cut(s) 366
SatI GCNGC 6 cut(s) 37, 40, 65, 272, 322, 411
Sau3AI GATC 7 cut(s) 109, 214, 244, 435, 652, 673, 853
Sau96I GGNCC 3 cut(s) 171, 319, 588
SbfI CCTGCAGG 1 cut(s) 385
ScaI AGTACT 1 cut(s) 367
ScrFI CCNGG 3 cut(s) 169, 394, 395
SdaI CCTGCAGG 1 cut(s) 385
SduI GDGCHC 3 cut(s) 93, 392, 765
SexAI ACCWGGT 1 cut(s) 167
SfaNI GCATC 2 cut(s) 207, 455
SfcI CTRYAG 1 cut(s) 381
SfoI GGCGCC 1 cut(s) 526
SinI GGWCC 2 cut(s) 171, 588
SmaI CCCGGG 1 cut(s) 395
SmlI CTYRAG 1 cut(s) 606
SmoI CTYRAG 1 cut(s) 606
Sse8387I CCTGCAGG 1 cut(s) 385
Sse9I AATT 6 cut(s) 10, 223, 235, 266, 744, 816
SsiI CCGC 6 cut(s) 36, 39, 42, 129, 313, 322
SspDI GGCGCC 1 cut(s) 524
StyD4I CCNGG 3 cut(s) 167, 392, 393
StyI CCWWGG 1 cut(s) 282
TaaI ACNGT 5 cut(s) 548, 559, 756, 771, 850
TaiI ACGT 1 cut(s) 60
TaqI TCGA 5 cut(s) 108, 213, 276, 361, 852
TaqII GACCGA 1 cut(s) 828
TasI AATT 6 cut(s) 10, 223, 235, 266, 744, 816
TatI WGTACW 1 cut(s) 365
TauI GCSGC 3 cut(s) 39, 42, 324
TfiI GAWTC 2 cut(s) 485, 663
TscAI CASTG 2 cut(s) 37, 759
TseI GCWGC 3 cut(s) 64, 271, 410
TspDTI ATGAA 5 cut(s) 414, 456, 523, 627, 792
TspMI CCCGGG 1 cut(s) 393
TspRI CASTG 2 cut(s) 37, 759
VpaK11BI GGWCC 2 cut(s) 171, 588
XapI RAATTY 1 cut(s) 10
XmaI CCCGGG 1 cut(s) 393
ZrmI AGTACT 1 cut(s) 367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.