Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0011498

Physical Location & Seq

Genomic Coordinates Forward (+)

1515 .. 5614

Gene Structure 4100 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1000100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGAAGGGAGTTCGGGGGGCGTAGGAGGCGGTGCGGCGGCAGTAGGCGGTGGAGGTGGAGGTGGCGGCGGCGGTAATGATGTCGAGCTCCTGTGTAAGACGCTGCAGGTTGAGCACAAGCTCTTCTACTTCGATCTCAAAGAGAACCCTCGCGGCCGCTATCTCAAAATTTCCGAGAAGACGTCGGCCACCAGGTCCACCATCATCGTTCCCTTCTCCGGCATCTCTTGGTTTCTCGATCTCTTCAATTACTATGTCAATTCCGACGACCAGGAAGTCTTCAGCAAGGAATTGCAGCTCGACACCAAGGTCTTCTACTTTGACATTGGCGAAAATCGCAGGGGCCGCTTCTTGAAGGTTTCTGAAGCTTCTGTTAGTAGAAATCGCAGTACTATCATTGTTCCTGCAGGAAGCACCCGAGATGAAGGGTGGGCAGCATTTAGAAACATTTTAGCTGATATCAATGAAGCATCAAGGCTTTTTATACTGCCGAATCAGCAAAGTTCTGAACCTTCAGAGCGCCTTGTTGGGCTTTCAGATGACGTAGGCGCTGGCTTCATATCTGGCCACAATAGTCAAACTGCTCCAACTTCTGAACTGAATGTTGACAGATCCGCAGAGTTGCCGGCACAAGATGAAATTGGTAACATGGGGGTGTCTAAAGTGATCAGAGCTGATCAAAAGAGATTCTTCTTTGATCTTGGGAATAATAATAGGGGACATTTCCTAAGAATATCTGAGGTTGCAGGTTCTGATCGGTCCTCCATAATTCTCCCCCTGTCAGGGCTCAAGCAGTTCCATGAAATAGTAGGTCATTTTGTGGAGATAACCAAAGACCGAATTGAAGGAATGACAGGTGCAAATGTTCGGACAGTGGATTCTCCCCAGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0010035 GO:0010038 GO:0042221 GO:0044424 GO:0044464 GO:0046686 GO:0050896 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PurA

Protein Analysis

298

Amino Acids

32.36

Weight (kDa)

5.65

Isoelectric Point (pI)

48.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PurA	PF04845	30 - 156	1.9e-20	PurA ssDNA and RNA-binding protein
PurA	PF04845	211 - 274	2.9e-12	PurA ssDNA and RNA-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32080 AT2G32080
fragaria_vesca	FvH4_3g46070 FvH4_3g46070
malus_domestica	MD03G1000100.v1.1 MD11G1000500.v1.1
prunus_persica	Prupe.6G000600_v2.0.a1 Prupe.6G000600_v2.0.a1
pyrus_communis	pycom03g00040 pycom11g00080
rosa_chinensis	RchiOBHm_Chr5g0084131
rosa_laevigata	RLG00000037085
rosa_multiflora	Rmu_sc0035629.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000510
rosa_rugosa	Rorug05G0489400
rosa_samantha	Rh5AG542000 Rh5BG567800 Rh5CG589500 Rh5DG575900
rosa_wichuraiana	Rw5G050420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	275, 308
AatII	GACGTC	1 cut(s)	185
Acc36I	ACCTGC	2 cut(s)	97, 737
AccII	CGCG	1 cut(s)	153
AclWI	GGATC	1 cut(s)	606
AcoI	YGGCCR	3 cut(s)	154, 186, 565
AcsI	RAATTY	1 cut(s)	168
AcuI	CTGAAG	3 cut(s)	265, 384, 498
AcyI	GRCGYC	1 cut(s)	182
AfaI	GTAC	1 cut(s)	391
AfiI	CCNNNNNNNGG	3 cut(s)	218, 782, 783
AgsI	TTSAA	3 cut(s)	247, 355, 845
AjnI	CCWGG	2 cut(s)	191, 270
AluBI	AGCT	6 cut(s)	88, 121, 298, 368, 455, 674
AluI	AGCT	6 cut(s)	88, 121, 298, 368, 455, 674
Alw21I	GWGCWC	2 cut(s)	90, 117
AlwI	GGATC	1 cut(s)	606
AlwNI	CAGNNNCTG	1 cut(s)	752
Ama87I	CYCGRG	1 cut(s)	417
AoxI	GGCC	4 cut(s)	154, 186, 343, 565
ApeKI	GCWGC	3 cut(s)	103, 295, 434
ApoI	RAATTY	1 cut(s)	168
AspLEI	GCGC	2 cut(s)	522, 551
AspS9I	GGNCC	3 cut(s)	195, 343, 759
AvaI	CYCGRG	1 cut(s)	417
AvaII	GGWCC	2 cut(s)	195, 759
BalI	TGGCCA	1 cut(s)	567
BanII	GRGCYC	2 cut(s)	90, 789
BbsI	GAAGAC	3 cut(s)	185, 271, 304
Bbv12I	GWGCWC	2 cut(s)	90, 117
BbvI	GCAGC	3 cut(s)	90, 307, 446
BccI	CCATC	1 cut(s)	209
BciT130I	CCWGG	2 cut(s)	193, 272
BclI	TGATCA	2 cut(s)	666, 676
BfmI	CTRYAG	2 cut(s)	104, 405
BfoI	RGCGCY	2 cut(s)	523, 552
BfuAI	ACCTGC	2 cut(s)	97, 737
BmcAI	AGTACT	1 cut(s)	391
Bme1390I	CCNGG	2 cut(s)	193, 272
Bme18I	GGWCC	2 cut(s)	195, 759
BmeT110I	CYCGRG	1 cut(s)	417
BmgT120I	GGNCC	3 cut(s)	195, 343, 759
BmiI	GGNNCC	1 cut(s)	344
BmrFI	CCNGG	2 cut(s)	193, 272
BmsI	GCATC	2 cut(s)	231, 479
BpiI	GAAGAC	3 cut(s)	185, 271, 304
BpuEI	CTTGAG	1 cut(s)	773
BsaHI	GRCGYC	1 cut(s)	182
BsaJI	CCNNGG	1 cut(s)	306
Bsc4I	CCNNNNNNNGG	3 cut(s)	218, 782, 783
Bse118I	RCCGGY	1 cut(s)	625
BseBI	CCWGG	2 cut(s)	193, 272
BseDI	CCNNGG	1 cut(s)	306
BseLI	CCNNNNNNNGG	3 cut(s)	218, 782, 783
BseMII	CTCAG	1 cut(s)	729
BseX3I	CGGCCG	1 cut(s)	154
BseXI	GCAGC	3 cut(s)	90, 307, 446
Bsh1236I	CGCG	1 cut(s)	153
Bsh1285I	CGRYCG	1 cut(s)	157
BshFI	GGCC	4 cut(s)	156, 188, 345, 567
BsiEI	CGRYCG	1 cut(s)	157
BsiHKAI	GWGCWC	2 cut(s)	90, 117
BsiHKCI	CYCGRG	1 cut(s)	417
BsiSI	CCGG	2 cut(s)	219, 626
BslFI	GGGAC	1 cut(s)	732
BslI	CCNNNNNNNGG	3 cut(s)	218, 782, 783
BsmFI	GGGAC	1 cut(s)	732
BsnI	GGCC	4 cut(s)	156, 188, 345, 567
BsoBI	CYCGRG	1 cut(s)	417
Bsp1286I	GDGCHC	3 cut(s)	90, 117, 789
Bsp143I	GATC	7 cut(s)	133, 238, 611, 666, 676, 697, 754
BspANI	GGCC	4 cut(s)	156, 188, 345, 567
BspCNI	CTCAG	1 cut(s)	730
BspFNI	CGCG	1 cut(s)	153
BspLI	GGNNCC	1 cut(s)	344
BspMAI	CTGCAG	2 cut(s)	108, 409
BspMI	ACCTGC	2 cut(s)	97, 737
BspPI	GGATC	1 cut(s)	606
BspQI	GCTCTTC	1 cut(s)	128
BsrFI	RCCGGY	1 cut(s)	625
BssAI	RCCGGY	1 cut(s)	625
BssECI	CCNNGG	1 cut(s)	306
BssMI	GATC	7 cut(s)	133, 238, 611, 666, 676, 697, 754
BssNI	GRCGYC	1 cut(s)	182
BssT1I	CCWWGG	1 cut(s)	306
Bst2UI	CCWGG	2 cut(s)	193, 272
Bst4CI	ACNGT	1 cut(s)	874
Bst6I	CTCTTC	2 cut(s)	128, 248
BstACI	GRCGYC	1 cut(s)	182
BstC8I	GCNNGC	2 cut(s)	553, 627
BstDEI	CTNAG	2 cut(s)	728, 738
BstFNI	CGCG	1 cut(s)	153
BstH2I	RGCGCY	2 cut(s)	523, 552
BstHHI	GCGC	2 cut(s)	522, 551
BstKTI	GATC	7 cut(s)	136, 241, 614, 669, 679, 700, 757
BstMBI	GATC	7 cut(s)	133, 238, 611, 666, 676, 697, 754
BstMCI	CGRYCG	1 cut(s)	157
BstMWI	GCNNNNNNNGC	5 cut(s)	27, 112, 336, 345, 496
BstNI	CCWGG	2 cut(s)	193, 272
BstSCI	CCNGG	2 cut(s)	191, 270
BstSFI	CTRYAG	2 cut(s)	104, 405
BstUI	CGCG	1 cut(s)	153
BstV1I	GCAGC	3 cut(s)	90, 307, 446
BstV2I	GAAGAC	3 cut(s)	185, 271, 304
BstX2I	RGATCY	1 cut(s)	611
BstYI	RGATCY	1 cut(s)	611
BstZI	CGGCCG	1 cut(s)	154
BsuRI	GGCC	4 cut(s)	156, 188, 345, 567
BtsIMutI	CAGTG	1 cut(s)	879
BveI	ACCTGC	2 cut(s)	97, 737
Cac8I	GCNNGC	2 cut(s)	553, 627
CaiI	CAGNNNCTG	1 cut(s)	752
CciNI	GCGGCCGC	1 cut(s)	154
CfoI	GCGC	2 cut(s)	522, 551
Cfr10I	RCCGGY	1 cut(s)	625
Cfr13I	GGNCC	3 cut(s)	195, 343, 759
CseI	GACGC	1 cut(s)	109
CsiI	ACCWGGT	1 cut(s)	191
Csp6I	GTAC	1 cut(s)	390
CviAII	CATG	2 cut(s)	649, 800
CviQI	GTAC	1 cut(s)	390
DdeI	CTNAG	2 cut(s)	728, 738
DpnI	GATC	7 cut(s)	135, 240, 613, 668, 678, 699, 756
DpnII	GATC	7 cut(s)	133, 238, 611, 666, 676, 697, 754
DrdI	GACNNNNNNGTC	2 cut(s)	275, 308
DseDI	GACNNNNNNGTC	2 cut(s)	275, 308
EaeI	YGGCCR	3 cut(s)	154, 186, 565
EagI	CGGCCG	1 cut(s)	154
Eam1104I	CTCTTC	2 cut(s)	128, 248
EarI	CTCTTC	2 cut(s)	128, 248
Ecl136II	GAGCTC	1 cut(s)	88
EclXI	CGGCCG	1 cut(s)	154
Eco130I	CCWWGG	1 cut(s)	306
Eco24I	GRGCYC	2 cut(s)	90, 789
Eco32I	GATATC	1 cut(s)	460
Eco47I	GGWCC	2 cut(s)	195, 759
Eco52I	CGGCCG	1 cut(s)	154
Eco53kI	GAGCTC	1 cut(s)	88
Eco57I	CTGAAG	3 cut(s)	265, 384, 498
Eco88I	CYCGRG	1 cut(s)	417
EcoICRI	GAGCTC	1 cut(s)	88
EcoRII	CCWGG	2 cut(s)	191, 270
EcoRV	GATATC	1 cut(s)	460
EcoT14I	CCWWGG	1 cut(s)	306
EcoT38I	GRGCYC	2 cut(s)	90, 789
ErhI	CCWWGG	1 cut(s)	306
FaeI	CATG	2 cut(s)	652, 803
FaiI	YATR	6 cut(s)	255, 485, 560, 650, 767, 801
FalI	AAGNNNNNCTT	2 cut(s)	674, 706
FaqI	GGGAC	1 cut(s)	732
FatI	CATG	2 cut(s)	648, 799
FbaI	TGATCA	2 cut(s)	666, 676
FriOI	GRGCYC	2 cut(s)	90, 789
GlaI	GCGC	2 cut(s)	521, 550
HaeII	RGCGCY	2 cut(s)	523, 552
HaeIII	GGCC	4 cut(s)	156, 188, 345, 567
HapII	CCGG	2 cut(s)	219, 626
HgaI	GACGC	1 cut(s)	109
HhaI	GCGC	2 cut(s)	522, 551
Hin1I	GRCGYC	1 cut(s)	182
Hin1II	CATG	2 cut(s)	652, 803
Hin6I	GCGC	2 cut(s)	520, 549
HinP1I	GCGC	2 cut(s)	520, 549
HincII	GTYRAC	1 cut(s)	607
HindII	GTYRAC	1 cut(s)	607
HindIII	AAGCTT	1 cut(s)	366
HinfI	GANTC	3 cut(s)	493, 687, 878
HpaII	CCGG	2 cut(s)	219, 626
Hpy166II	GTNNAC	2 cut(s)	198, 607
Hpy188III	TCNNGA	2 cut(s)	236, 352
Hpy8I	GTNNAC	2 cut(s)	198, 607
Hpy99I	CGWCG	2 cut(s)	187, 269
HpyAV	CCTTC	5 cut(s)	223, 349, 419, 522, 839
HpyCH4III	ACNGT	1 cut(s)	874
HpyCH4IV	ACGT	2 cut(s)	182, 543
HpyCH4V	TGCA	5 cut(s)	106, 295, 407, 746, 860
HpyF10VI	GCNNNNNNNGC	5 cut(s)	27, 112, 336, 345, 496
HpyF3I	CTNAG	2 cut(s)	728, 738
HpySE526I	ACGT	2 cut(s)	182, 543
Hsp92I	GRCGYC	1 cut(s)	182
Hsp92II	CATG	2 cut(s)	652, 803
HspAI	GCGC	2 cut(s)	520, 549
KroI	GCCGGC	1 cut(s)	625
KroNI	GCCGGC	1 cut(s)	627
Ksp22I	TGATCA	2 cut(s)	666, 676
Kzo9I	GATC	7 cut(s)	133, 238, 611, 666, 676, 697, 754
LguI	GCTCTTC	1 cut(s)	128
LmnI	GCTCC	2 cut(s)	93, 589
Lsp1109I	GCAGC	3 cut(s)	90, 307, 446
LweI	GCATC	2 cut(s)	231, 479
MabI	ACCWGGT	1 cut(s)	191
MaeII	ACGT	2 cut(s)	182, 543
MaeIII	GTNAC	1 cut(s)	644
MalI	GATC	7 cut(s)	135, 240, 613, 668, 678, 699, 756
MboI	GATC	7 cut(s)	133, 238, 611, 666, 676, 697, 754
MboII	GAAGA	6 cut(s)	115, 190, 235, 271, 304, 682
MflI	RGATCY	1 cut(s)	611
MhlI	GDGCHC	3 cut(s)	90, 117, 789
MlsI	TGGCCA	1 cut(s)	567
MluCI	AATT	7 cut(s)	168, 247, 259, 290, 639, 768, 840
MluNI	TGGCCA	1 cut(s)	567
MmeI	TCCRAC	2 cut(s)	288, 611
MnlI	CCTC	7 cut(s)	20, 47, 53, 159, 733, 772, 882
Mox20I	TGGCCA	1 cut(s)	567
MroNI	GCCGGC	1 cut(s)	625
MscI	TGGCCA	1 cut(s)	567
MslI	CAYNNNNRTG	1 cut(s)	653
Msp20I	TGGCCA	1 cut(s)	567
MspI	CCGG	2 cut(s)	219, 626
MspR9I	CCNGG	2 cut(s)	193, 272
MvaI	CCWGG	2 cut(s)	193, 272
MvnI	CGCG	1 cut(s)	153
MwoI	GCNNNNNNNGC	5 cut(s)	27, 112, 336, 345, 496
NaeI	GCCGGC	1 cut(s)	627
NdeII	GATC	7 cut(s)	133, 238, 611, 666, 676, 697, 754
NgoMIV	GCCGGC	1 cut(s)	625
NlaIII	CATG	2 cut(s)	652, 803
NlaIV	GGNNCC	1 cut(s)	344
NotI	GCGGCCGC	1 cut(s)	154
PciSI	GCTCTTC	1 cut(s)	128
PdiI	GCCGGC	1 cut(s)	627
PfeI	GAWTC	3 cut(s)	493, 687, 878
Psp124BI	GAGCTC	1 cut(s)	90
Psp6I	CCWGG	2 cut(s)	191, 270
PspGI	CCWGG	2 cut(s)	191, 270
PspN4I	GGNNCC	1 cut(s)	344
PspPI	GGNCC	3 cut(s)	195, 343, 759
PstI	CTGCAG	2 cut(s)	108, 409
PstNI	CAGNNNCTG	1 cut(s)	752
PsuI	RGATCY	1 cut(s)	611
RsaI	GTAC	1 cut(s)	391
RsaNI	GTAC	1 cut(s)	390
RseI	CAYNNNNRTG	1 cut(s)	653
SacI	GAGCTC	1 cut(s)	90
SapI	GCTCTTC	1 cut(s)	128
Sau3AI	GATC	7 cut(s)	133, 238, 611, 666, 676, 697, 754
Sau96I	GGNCC	3 cut(s)	195, 343, 759
SbfI	CCTGCAGG	1 cut(s)	409
ScaI	AGTACT	1 cut(s)	391
ScrFI	CCNGG	2 cut(s)	193, 272
SdaI	CCTGCAGG	1 cut(s)	409
SduI	GDGCHC	3 cut(s)	90, 117, 789
SexAI	ACCWGGT	1 cut(s)	191
SfaNI	GCATC	2 cut(s)	231, 479
SfcI	CTRYAG	2 cut(s)	104, 405
SinI	GGWCC	2 cut(s)	195, 759
SmiMI	CAYNNNNRTG	1 cut(s)	653
SmlI	CTYRAG	1 cut(s)	788
SmoI	CTYRAG	1 cut(s)	788
Sse8387I	CCTGCAGG	1 cut(s)	409
Sse9I	AATT	7 cut(s)	168, 247, 259, 290, 639, 768, 840
SstI	GAGCTC	1 cut(s)	90
StyD4I	CCNGG	2 cut(s)	191, 270
StyI	CCWWGG	1 cut(s)	306
TaaI	ACNGT	1 cut(s)	874
TaiI	ACGT	2 cut(s)	185, 546
TaqI	TCGA	4 cut(s)	84, 132, 237, 300
TaqII	GACCGA	2 cut(s)	747, 852
TasI	AATT	7 cut(s)	168, 247, 259, 290, 639, 768, 840
TatI	WGTACW	1 cut(s)	389
TauI	GCSGC	7 cut(s)	38, 41, 69, 72, 156, 159, 348
TfiI	GAWTC	3 cut(s)	493, 687, 878
TscAI	CASTG	1 cut(s)	879
TseI	GCWGC	3 cut(s)	103, 295, 434
TspDTI	ATGAA	5 cut(s)	438, 480, 547, 651, 816
TspRI	CASTG	1 cut(s)	879
VpaK11BI	GGWCC	2 cut(s)	195, 759
XapI	RAATTY	1 cut(s)	168
ZraI	GACGTC	1 cut(s)	183
ZrmI	AGTACT	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.