Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0011498

Physical Location & Seq

Genomic Coordinates Reverse (-)

954296 .. 958159

Gene Structure 3864 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00000510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGAAGGGAATTCGGGGGGCGTAGGTGGAGGAGGAGGAGCAATAGCAGGAGGTGGCGGTGGCGGTGGCGGTGGAGGTAATGACGTGGAGCTGCTTTGTAAGACGCTGCAGGTTGAGCACAAGCTTTTCTACTTCGATCTCAAAGAGAACCCTCGCGGTCGTTATCTCAAAATTTCTGAAAAGACTTCAGCCACCAGGTCCACTATCATCGTTCCCTTCTCTGGCATCTCGTGGTTCCTCGATCTCTTCAATTACTATGTCAATTCGGACGATCAGGATGTCTTCAGCAAGGAACTGCAGCTCGACACAAAGGCACCGCTCGTCTTCTACTTTGACATTGGCGAGAACCGCAGGGGCCGCTTCTTGAAGGTATCCGAAGCTTCTGTTAGTAGAAATCGAAGTACTATCATTGTTCCTGCAGGGAGCACCCGGGATGAAGGGTGGGCAGCATTTAGGAACATTTTGGCTGAGATCAATGAAGCATCAAGGCTTGTCATACTGCCTAATCAGCAGCAAAGTTCTGAATCTTCAGAGCGACTTGTTGGGCTTTCGGATGATGTAGGTGCTGGCTTCATATCTGGCCACAGTAGCCAAACTGTGCCAACTTCTGAACTGAATGTTGACAGATCCACAGAGTTGCCGGCACAAGATGAAATTGGTAACATGGGGGTTTCTAAAGTGATTAGAGCTGATCAAAAGAGATTCTTCTTTGATCTTGGAAACAATAACAGGGGACATTTTCTAAGAATATCGGAGGTTGCAGGCTCTGATAGGTCATCCATAATTCTCCCACTGTCAGGGCTCAAACAGTTCCATGAAATAGTGGGTCATTTTGTGGAGATAACCAAAGATCGAATTGAAGGAATGACAGGTGCAAATGTTCGCACAGTGGATCCTCCTCAGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0010035 GO:0010038 GO:0042221 GO:0044424 GO:0044464 GO:0046686 GO:0050896 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PurA

Protein Analysis

302

Amino Acids

32.83

Weight (kDa)

5.65

Isoelectric Point (pI)

49.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PurA	PF04845	31 - 160	1.2e-18	PurA ssDNA and RNA-binding protein
PurA	PF04845	217 - 279	3.9e-12	PurA ssDNA and RNA-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32080 AT2G32080
fragaria_vesca	FvH4_3g46070 FvH4_3g46070
malus_domestica	MD03G1000100.v1.1 MD11G1000500.v1.1
prunus_persica	Prupe.6G000600_v2.0.a1 Prupe.6G000600_v2.0.a1
pyrus_communis	pycom03g00040 pycom11g00080
rosa_chinensis	RchiOBHm_Chr5g0084131
rosa_laevigata	RLG00000037085
rosa_multiflora	Rmu_sc0035629.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000510
rosa_rugosa	Rorug05G0489400
rosa_samantha	Rh5AG542000 Rh5BG567800 Rh5CG589500 Rh5DG575900
rosa_wichuraiana	Rw5G050420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	100
AccB1I	GGYRCC	1 cut(s)	313
AccBSI	CCGCTC	1 cut(s)	319
AccII	CGCG	1 cut(s)	156
AciI	CCGC	7 cut(s)	57, 63, 69, 156, 317, 349, 358
AclWI	GGATC	3 cut(s)	621, 887, 900
AcoI	YGGCCR	1 cut(s)	580
AcsI	RAATTY	2 cut(s)	10, 171
AcuI	CTGAAG	3 cut(s)	171, 268, 513
AfaI	GTAC	1 cut(s)	403
AfiI	CCNNNNNNNGG	2 cut(s)	221, 797
AgsI	TTSAA	3 cut(s)	250, 367, 860
AjiI	CACGTC	1 cut(s)	85
AjnI	CCWGG	1 cut(s)	194
AluBI	AGCT	5 cut(s)	91, 124, 301, 380, 689
AluI	AGCT	5 cut(s)	91, 124, 301, 380, 689
Alw21I	GWGCWC	2 cut(s)	120, 428
AlwI	GGATC	3 cut(s)	621, 887, 900
AlwNI	CAGNNNCTG	1 cut(s)	767
Ama87I	CYCGRG	1 cut(s)	429
AoxI	GGCC	2 cut(s)	355, 580
ApeKI	GCWGC	5 cut(s)	91, 106, 298, 446, 511
ApoI	RAATTY	2 cut(s)	10, 171
AspS9I	GGNCC	2 cut(s)	198, 355
AsuC2I	CCSGG	2 cut(s)	430, 431
AvaI	CYCGRG	1 cut(s)	429
AvaII	GGWCC	1 cut(s)	198
BalI	TGGCCA	1 cut(s)	582
BamHI	GGATCC	1 cut(s)	892
BanI	GGYRCC	1 cut(s)	313
BanII	GRGCYC	1 cut(s)	804
BauI	CACGAG	1 cut(s)	229
BbsI	GAAGAC	2 cut(s)	274, 316
Bbv12I	GWGCWC	2 cut(s)	120, 428
BbvI	GCAGC	5 cut(s)	78, 93, 310, 458, 523
BciT130I	CCWGG	1 cut(s)	196
BciVI	GTATCC	1 cut(s)	382
BclI	TGATCA	1 cut(s)	691
BcnI	CCSGG	2 cut(s)	430, 431
BfmI	CTRYAG	3 cut(s)	107, 296, 417
BfuAI	ACCTGC	1 cut(s)	100
BfuI	GTATCC	1 cut(s)	382
BisI	GCNGC	6 cut(s)	92, 107, 299, 358, 447, 512
BlsI	GCNGC	6 cut(s)	93, 108, 300, 359, 448, 513
BmcAI	AGTACT	1 cut(s)	403
Bme1390I	CCNGG	3 cut(s)	196, 430, 431
Bme18I	GGWCC	1 cut(s)	198
BmeT110I	CYCGRG	1 cut(s)	429
BmgBI	CACGTC	1 cut(s)	85
BmgT120I	GGNCC	2 cut(s)	198, 355
BmiI	GGNNCC	4 cut(s)	236, 315, 356, 894
BmrFI	CCNGG	3 cut(s)	196, 430, 431
BmsI	GCATC	2 cut(s)	234, 491
BpiI	GAAGAC	2 cut(s)	274, 316
BpuMI	CCSGG	2 cut(s)	430, 431
BsaJI	CCNNGG	1 cut(s)	429
Bsc4I	CCNNNNNNNGG	2 cut(s)	221, 797
Bse118I	RCCGGY	1 cut(s)	640
BseBI	CCWGG	1 cut(s)	196
BseDI	CCNNGG	1 cut(s)	429
BseGI	GGATG	4 cut(s)	283, 439, 559, 776
BseLI	CCNNNNNNNGG	2 cut(s)	221, 797
BseMII	CTCAG	1 cut(s)	459
BseRI	GAGGAG	4 cut(s)	45, 48, 51, 888
BseXI	GCAGC	5 cut(s)	78, 93, 310, 458, 523
Bsh1236I	CGCG	1 cut(s)	156
Bsh1285I	CGRYCG	1 cut(s)	160
BshFI	GGCC	2 cut(s)	357, 582
BshNI	GGYRCC	1 cut(s)	313
BsiEI	CGRYCG	1 cut(s)	160
BsiHKAI	GWGCWC	2 cut(s)	120, 428
BsiHKCI	CYCGRG	1 cut(s)	429
BsiSI	CCGG	2 cut(s)	430, 641
BslFI	GGGAC	1 cut(s)	747
BslI	CCNNNNNNNGG	2 cut(s)	221, 797
BsmFI	GGGAC	1 cut(s)	747
BsnI	GGCC	2 cut(s)	357, 582
BsoBI	CYCGRG	1 cut(s)	429
Bsp1286I	GDGCHC	3 cut(s)	120, 428, 804
Bsp143I	GATC	9 cut(s)	136, 241, 271, 471, 626, 691, 712, 850, 892
BspACI	CCGC	7 cut(s)	57, 63, 69, 156, 317, 349, 358
BspANI	GGCC	2 cut(s)	357, 582
BspCNI	CTCAG	1 cut(s)	460
BspFNI	CGCG	1 cut(s)	156
BspLI	GGNNCC	4 cut(s)	236, 315, 356, 894
BspMAI	CTGCAG	3 cut(s)	111, 300, 421
BspMI	ACCTGC	1 cut(s)	100
BspPI	GGATC	3 cut(s)	621, 887, 900
BspT107I	GGYRCC	1 cut(s)	313
BsrBI	CCGCTC	1 cut(s)	319
BsrFI	RCCGGY	1 cut(s)	640
BssAI	RCCGGY	1 cut(s)	640
BssECI	CCNNGG	1 cut(s)	429
BssMI	GATC	9 cut(s)	136, 241, 271, 471, 626, 691, 712, 850, 892
BssSI	CACGAG	1 cut(s)	229
Bst2BI	CACGAG	1 cut(s)	229
Bst2UI	CCWGG	1 cut(s)	196
Bst4CI	ACNGT	5 cut(s)	587, 598, 795, 810, 889
Bst6I	CTCTTC	1 cut(s)	251
BstC8I	GCNNGC	3 cut(s)	568, 642, 763
BstDEI	CTNAG	3 cut(s)	468, 743, 900
BstF5I	GGATG	4 cut(s)	283, 439, 559, 776
BstFNI	CGCG	1 cut(s)	156
BstKTI	GATC	9 cut(s)	139, 244, 274, 474, 629, 694, 715, 853, 895
BstMBI	GATC	9 cut(s)	136, 241, 271, 471, 626, 691, 712, 850, 892
BstMCI	CGRYCG	1 cut(s)	160
BstMWI	GCNNNNNNNGC	5 cut(s)	115, 348, 357, 508, 588
BstNI	CCWGG	1 cut(s)	196
BstSCI	CCNGG	3 cut(s)	194, 428, 429
BstSFI	CTRYAG	3 cut(s)	107, 296, 417
BstUI	CGCG	1 cut(s)	156
BstV1I	GCAGC	5 cut(s)	78, 93, 310, 458, 523
BstV2I	GAAGAC	2 cut(s)	274, 316
BstX2I	RGATCY	2 cut(s)	626, 892
BstYI	RGATCY	2 cut(s)	626, 892
BsuI	GTATCC	1 cut(s)	382
BsuRI	GGCC	2 cut(s)	357, 582
BtrI	CACGTC	1 cut(s)	85
BtsCI	GGATG	4 cut(s)	283, 439, 559, 776
BtsIMutI	CAGTG	2 cut(s)	791, 894
BveI	ACCTGC	1 cut(s)	100
Cac8I	GCNNGC	3 cut(s)	568, 642, 763
CaiI	CAGNNNCTG	1 cut(s)	767
Cfr10I	RCCGGY	1 cut(s)	640
Cfr13I	GGNCC	2 cut(s)	198, 355
Cfr9I	CCCGGG	1 cut(s)	429
CseI	GACGC	1 cut(s)	112
CsiI	ACCWGGT	1 cut(s)	194
Csp6I	GTAC	1 cut(s)	402
CviAII	CATG	2 cut(s)	664, 815
CviQI	GTAC	1 cut(s)	402
DdeI	CTNAG	3 cut(s)	468, 743, 900
DpnI	GATC	9 cut(s)	138, 243, 273, 473, 628, 693, 714, 852, 894
DpnII	GATC	9 cut(s)	136, 241, 271, 471, 626, 691, 712, 850, 892
EaeI	YGGCCR	1 cut(s)	580
Eam1104I	CTCTTC	1 cut(s)	251
EarI	CTCTTC	1 cut(s)	251
Eco24I	GRGCYC	1 cut(s)	804
Eco47I	GGWCC	1 cut(s)	198
Eco57I	CTGAAG	3 cut(s)	171, 268, 513
Eco88I	CYCGRG	1 cut(s)	429
EcoRI	GAATTC	1 cut(s)	10
EcoRII	CCWGG	1 cut(s)	194
EcoT38I	GRGCYC	1 cut(s)	804
FaeI	CATG	2 cut(s)	667, 818
FaiI	YATR	6 cut(s)	258, 497, 575, 665, 782, 816
FalI	AAGNNNNNCTT	2 cut(s)	689, 721
FaqI	GGGAC	1 cut(s)	747
FatI	CATG	2 cut(s)	663, 814
FbaI	TGATCA	1 cut(s)	691
Fnu4HI	GCNGC	6 cut(s)	92, 107, 299, 358, 447, 512
FokI	GGATG	4 cut(s)	290, 446, 566, 763
FriOI	GRGCYC	1 cut(s)	804
Fsp4HI	GCNGC	6 cut(s)	92, 107, 299, 358, 447, 512
GluI	GCNGC	6 cut(s)	92, 107, 299, 358, 447, 512
HaeIII	GGCC	2 cut(s)	357, 582
HapII	CCGG	2 cut(s)	430, 641
HgaI	GACGC	1 cut(s)	112
Hin1II	CATG	2 cut(s)	667, 818
HincII	GTYRAC	1 cut(s)	622
HindII	GTYRAC	1 cut(s)	622
HindIII	AAGCTT	2 cut(s)	122, 378
HinfI	GANTC	2 cut(s)	524, 702
HpaII	CCGG	2 cut(s)	430, 641
Hpy166II	GTNNAC	2 cut(s)	201, 622
Hpy188III	TCNNGA	2 cut(s)	275, 364
Hpy8I	GTNNAC	2 cut(s)	201, 622
HpyAV	CCTTC	4 cut(s)	226, 361, 431, 854
HpyCH4III	ACNGT	5 cut(s)	587, 598, 795, 810, 889
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	5 cut(s)	109, 298, 419, 761, 875
HpyF10VI	GCNNNNNNNGC	5 cut(s)	115, 348, 357, 508, 588
HpyF3I	CTNAG	3 cut(s)	468, 743, 900
HpySE526I	ACGT	1 cut(s)	84
Hsp92II	CATG	2 cut(s)	667, 818
KroI	GCCGGC	1 cut(s)	640
KroNI	GCCGGC	1 cut(s)	642
Ksp22I	TGATCA	1 cut(s)	691
Kzo9I	GATC	9 cut(s)	136, 241, 271, 471, 626, 691, 712, 850, 892
LmnI	GCTCC	3 cut(s)	38, 88, 423
Lsp1109I	GCAGC	5 cut(s)	78, 93, 310, 458, 523
LweI	GCATC	2 cut(s)	234, 491
MabI	ACCWGGT	1 cut(s)	194
MaeII	ACGT	1 cut(s)	84
MaeIII	GTNAC	1 cut(s)	659
MalI	GATC	9 cut(s)	138, 243, 273, 473, 628, 693, 714, 852, 894
MbiI	CCGCTC	1 cut(s)	319
MboI	GATC	9 cut(s)	136, 241, 271, 471, 626, 691, 712, 850, 892
MboII	GAAGA	5 cut(s)	238, 274, 316, 519, 697
MflI	RGATCY	2 cut(s)	626, 892
MhlI	GDGCHC	3 cut(s)	120, 428, 804
MlsI	TGGCCA	1 cut(s)	582
MluCI	AATT	7 cut(s)	10, 171, 250, 262, 654, 783, 855
MluNI	TGGCCA	1 cut(s)	582
Mox20I	TGGCCA	1 cut(s)	582
MroNI	GCCGGC	1 cut(s)	640
MscI	TGGCCA	1 cut(s)	582
Msp20I	TGGCCA	1 cut(s)	582
MspI	CCGG	2 cut(s)	430, 641
MspR9I	CCNGG	3 cut(s)	196, 430, 431
MvaI	CCWGG	1 cut(s)	196
MvnI	CGCG	1 cut(s)	156
MwoI	GCNNNNNNNGC	5 cut(s)	115, 348, 357, 508, 588
NaeI	GCCGGC	1 cut(s)	642
NciI	CCSGG	2 cut(s)	430, 431
NdeII	GATC	9 cut(s)	136, 241, 271, 471, 626, 691, 712, 850, 892
NgoMIV	GCCGGC	1 cut(s)	640
NlaIII	CATG	2 cut(s)	667, 818
NlaIV	GGNNCC	4 cut(s)	236, 315, 356, 894
PdiI	GCCGGC	1 cut(s)	642
PfeI	GAWTC	2 cut(s)	524, 702
PkrI	GCNGC	6 cut(s)	93, 108, 300, 359, 448, 513
Psp6I	CCWGG	1 cut(s)	194
PspGI	CCWGG	1 cut(s)	194
PspN4I	GGNNCC	4 cut(s)	236, 315, 356, 894
PspPI	GGNCC	2 cut(s)	198, 355
PstI	CTGCAG	3 cut(s)	111, 300, 421
PstNI	CAGNNNCTG	1 cut(s)	767
PsuI	RGATCY	2 cut(s)	626, 892
RsaI	GTAC	1 cut(s)	403
RsaNI	GTAC	1 cut(s)	402
SatI	GCNGC	6 cut(s)	92, 107, 299, 358, 447, 512
Sau3AI	GATC	9 cut(s)	136, 241, 271, 471, 626, 691, 712, 850, 892
Sau96I	GGNCC	2 cut(s)	198, 355
SbfI	CCTGCAGG	1 cut(s)	421
ScaI	AGTACT	1 cut(s)	403
ScrFI	CCNGG	3 cut(s)	196, 430, 431
SdaI	CCTGCAGG	1 cut(s)	421
SduI	GDGCHC	3 cut(s)	120, 428, 804
SexAI	ACCWGGT	1 cut(s)	194
SfaNI	GCATC	2 cut(s)	234, 491
SfcI	CTRYAG	3 cut(s)	107, 296, 417
SinI	GGWCC	1 cut(s)	198
SmaI	CCCGGG	1 cut(s)	431
Sse8387I	CCTGCAGG	1 cut(s)	421
Sse9I	AATT	7 cut(s)	10, 171, 250, 262, 654, 783, 855
SsiI	CCGC	7 cut(s)	57, 63, 69, 156, 317, 349, 358
StyD4I	CCNGG	3 cut(s)	194, 428, 429
TaaI	ACNGT	5 cut(s)	587, 598, 795, 810, 889
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	5 cut(s)	135, 240, 303, 397, 853
TasI	AATT	7 cut(s)	10, 171, 250, 262, 654, 783, 855
TatI	WGTACW	1 cut(s)	401
TauI	GCSGC	1 cut(s)	360
TfiI	GAWTC	2 cut(s)	524, 702
TscAI	CASTG	2 cut(s)	798, 894
TseI	GCWGC	5 cut(s)	91, 106, 298, 446, 511
TspDTI	ATGAA	5 cut(s)	450, 492, 562, 666, 831
TspMI	CCCGGG	1 cut(s)	429
TspRI	CASTG	2 cut(s)	798, 894
VpaK11BI	GGWCC	1 cut(s)	198
XapI	RAATTY	2 cut(s)	10, 171
XmaI	CCCGGG	1 cut(s)	429
ZrmI	AGTACT	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.