RLG00000037085

Transcription factor Pur-alpha

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0011498
Physical Location & Seq
Forward (+)
88183055 .. 88186601
3547 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000037085

Sequence Viewer

Length: 906 bp
ATGGAAGGGAATTCGGGGGGCGTAGGTGGAGGAGGAGGAGGAGCAATAGCAGGAGGTGGCGGTGGCGGTGGCGGTGGCGGTGGAGGTAATGACGTGGAGCTGCTTTGTAAGACGCTGCAGGTTGAGCACAAGCTTTTCTACTTCGATCTCAAAGAGAACCCTCGCGGTCGTTATCTCAAAATTTCTGAAAAGACTTCAGCCACCAGGTCCACTATCATCGTTCCCTTCTCCGGCATCTCGTGGTTCCTCGATCTGTTCAATTACTATGTCAATTCGGACGATCAGGATGTCTCCAGCAAGGAACTGCAGCTCGACACAAAGGTCTTCTACTTTGACATTGGCGAGAACCGCAGGGGCCGCTTCTTGAAGGTATCCGAAGCTTCTGTTAGTAGAAATCGAAGTACTATCATTGTTCCTGCAGGGAGCACCCGGGATGAAGGGTGGGCAGCATTTAGGAACATTTTGGCTGAGATCAATGAAGCATCAAGGCTTTTCATACTGCCTAATCAGCAAAATTCTGAATCTTCAGAGCGACTTGTTGGGCTTTCAGATGATGTAGGTGCTGGCTTCATATCTGGCCACAGTAGCCAAACTGTGCCAACTTCTGAACTGAATGTTGACAGATCCACAGAGTTGCCGGCACAAGATGAAATTGGTAACATGGGGGTTTCCAAAGTGATTAGAGCTGATCAAAAGAGATTCTTCTTTGATCTTGGAAACAATAACAGGGGACATTTTCTAAGAATATCGGAGGTTGCAGGCTCTGATAGGTCATCCATAATTCTCCCACTGTCGGGGCTCAAACAGTTCCATGAAATAGTGGGTCATTTTGTGGAGATAACCAAAGATCGAATTGAAGGAATGACAGGTGCAAATGTTCGCACAGTGGATCCTCCTCAGAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0010035 GO:0010038 GO:0042221 GO:0044424 GO:0044464 GO:0046686 GO:0050896 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PurA

Protein Analysis

302

Amino Acids

32.61

Weight (kDa)

5.65

Isoelectric Point (pI)

47.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PurA PF04845 34 - 160 7e-21 PurA ssDNA and RNA-binding protein
PurA PF04845 215 - 278 3.3e-12 PurA ssDNA and RNA-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011498)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G32080 AT2G32080
fragaria_vesca FvH4_3g46070 FvH4_3g46070
malus_domestica MD03G1000100.v1.1 MD11G1000500.v1.1
prunus_persica Prupe.6G000600_v2.0.a1 Prupe.6G000600_v2.0.a1
pyrus_communis pycom03g00040 pycom11g00080
rosa_chinensis RchiOBHm_Chr5g0084131
rosa_laevigata RLG00000037085
rosa_multiflora Rmu_sc0035629.1_g000001
rosa_roxburghii Rroxscaffold_1G00000510
rosa_rugosa Rorug05G0489400
rosa_samantha Rh5AG542000 Rh5BG567800 Rh5CG589500 Rh5DG575900
rosa_wichuraiana Rw5G050420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 320
Acc36I ACCTGC 1 cut(s) 109
AccII CGCG 1 cut(s) 165
AciI CCGC 7 cut(s) 60, 66, 72, 78, 165, 349, 358
AclWI GGATC 3 cut(s) 618, 884, 897
AcoI YGGCCR 1 cut(s) 577
AcsI RAATTY 3 cut(s) 10, 180, 514
AcuI CTGAAG 2 cut(s) 180, 510
AfaI GTAC 1 cut(s) 403
AfiI CCNNNNNNNGG 3 cut(s) 230, 793, 794
AgsI TTSAA 3 cut(s) 259, 367, 857
AjiI CACGTC 1 cut(s) 94
AjnI CCWGG 1 cut(s) 203
AluBI AGCT 5 cut(s) 100, 133, 310, 380, 686
AluI AGCT 5 cut(s) 100, 133, 310, 380, 686
Alw21I GWGCWC 2 cut(s) 129, 428
Alw26I GTCTC 1 cut(s) 295
AlwI GGATC 3 cut(s) 618, 884, 897
AlwNI CAGNNNCTG 1 cut(s) 764
Ama87I CYCGRG 1 cut(s) 429
AoxI GGCC 2 cut(s) 355, 577
ApeKI GCWGC 4 cut(s) 100, 115, 307, 446
ApoI RAATTY 3 cut(s) 10, 180, 514
AspS9I GGNCC 2 cut(s) 207, 355
AsuC2I CCSGG 2 cut(s) 430, 431
AvaI CYCGRG 1 cut(s) 429
AvaII GGWCC 1 cut(s) 207
BalI TGGCCA 1 cut(s) 579
BamHI GGATCC 1 cut(s) 889
BanII GRGCYC 1 cut(s) 801
BauI CACGAG 1 cut(s) 238
BbsI GAAGAC 1 cut(s) 316
Bbv12I GWGCWC 2 cut(s) 129, 428
BbvI GCAGC 4 cut(s) 87, 102, 319, 458
BciT130I CCWGG 1 cut(s) 205
BciVI GTATCC 1 cut(s) 382
BclI TGATCA 1 cut(s) 688
BcnI CCSGG 2 cut(s) 430, 431
BcoDI GTCTC 1 cut(s) 295
BfmI CTRYAG 3 cut(s) 116, 305, 417
BfuAI ACCTGC 1 cut(s) 109
BfuI GTATCC 1 cut(s) 382
BisI GCNGC 5 cut(s) 101, 116, 308, 358, 447
BlsI GCNGC 5 cut(s) 102, 117, 309, 359, 448
BmcAI AGTACT 1 cut(s) 403
Bme1390I CCNGG 3 cut(s) 205, 430, 431
Bme18I GGWCC 1 cut(s) 207
BmeT110I CYCGRG 1 cut(s) 429
BmgBI CACGTC 1 cut(s) 94
BmgT120I GGNCC 2 cut(s) 207, 355
BmiI GGNNCC 3 cut(s) 245, 356, 891
BmrFI CCNGG 3 cut(s) 205, 430, 431
BmsI GCATC 2 cut(s) 243, 491
BpiI GAAGAC 1 cut(s) 316
BpmI CTGGAG 1 cut(s) 277
BpuMI CCSGG 2 cut(s) 430, 431
BsaJI CCNNGG 1 cut(s) 429
Bsc4I CCNNNNNNNGG 3 cut(s) 230, 793, 794
Bse118I RCCGGY 1 cut(s) 637
BseBI CCWGG 1 cut(s) 205
BseDI CCNNGG 1 cut(s) 429
BseGI GGATG 3 cut(s) 292, 439, 773
BseLI CCNNNNNNNGG 3 cut(s) 230, 793, 794
BseMII CTCAG 1 cut(s) 459
BseRI GAGGAG 5 cut(s) 45, 48, 51, 54, 885
BseXI GCAGC 4 cut(s) 87, 102, 319, 458
Bsh1236I CGCG 1 cut(s) 165
Bsh1285I CGRYCG 1 cut(s) 169
BshFI GGCC 2 cut(s) 357, 579
BsiEI CGRYCG 1 cut(s) 169
BsiHKAI GWGCWC 2 cut(s) 129, 428
BsiHKCI CYCGRG 1 cut(s) 429
BsiSI CCGG 3 cut(s) 231, 430, 638
BslFI GGGAC 1 cut(s) 744
BslI CCNNNNNNNGG 3 cut(s) 230, 793, 794
BsmAI GTCTC 1 cut(s) 295
BsmFI GGGAC 1 cut(s) 744
BsnI GGCC 2 cut(s) 357, 579
BsoBI CYCGRG 1 cut(s) 429
Bsp1286I GDGCHC 3 cut(s) 129, 428, 801
Bsp143I GATC 9 cut(s) 145, 250, 280, 471, 623, 688, 709, 847, 889
BspACI CCGC 7 cut(s) 60, 66, 72, 78, 165, 349, 358
BspANI GGCC 2 cut(s) 357, 579
BspCNI CTCAG 1 cut(s) 460
BspFNI CGCG 1 cut(s) 165
BspLI GGNNCC 3 cut(s) 245, 356, 891
BspMAI CTGCAG 3 cut(s) 120, 309, 421
BspMI ACCTGC 1 cut(s) 109
BspPI GGATC 3 cut(s) 618, 884, 897
BsrFI RCCGGY 1 cut(s) 637
BssAI RCCGGY 1 cut(s) 637
BssECI CCNNGG 1 cut(s) 429
BssMI GATC 9 cut(s) 145, 250, 280, 471, 623, 688, 709, 847, 889
BssSI CACGAG 1 cut(s) 238
Bst2BI CACGAG 1 cut(s) 238
Bst2UI CCWGG 1 cut(s) 205
Bst4CI ACNGT 5 cut(s) 584, 595, 792, 807, 886
BstC8I GCNNGC 3 cut(s) 565, 639, 760
BstDEI CTNAG 3 cut(s) 468, 740, 897
BstF5I GGATG 3 cut(s) 292, 439, 773
BstFNI CGCG 1 cut(s) 165
BstKTI GATC 9 cut(s) 148, 253, 283, 474, 626, 691, 712, 850, 892
BstMAI GTCTC 1 cut(s) 295
BstMBI GATC 9 cut(s) 145, 250, 280, 471, 623, 688, 709, 847, 889
BstMCI CGRYCG 1 cut(s) 169
BstMWI GCNNNNNNNGC 5 cut(s) 124, 348, 357, 508, 585
BstNI CCWGG 1 cut(s) 205
BstSCI CCNGG 3 cut(s) 203, 428, 429
BstSFI CTRYAG 3 cut(s) 116, 305, 417
BstUI CGCG 1 cut(s) 165
BstV1I GCAGC 4 cut(s) 87, 102, 319, 458
BstV2I GAAGAC 1 cut(s) 316
BstX2I RGATCY 2 cut(s) 623, 889
BstYI RGATCY 2 cut(s) 623, 889
BsuI GTATCC 1 cut(s) 382
BsuRI GGCC 2 cut(s) 357, 579
BtrI CACGTC 1 cut(s) 94
BtsCI GGATG 3 cut(s) 292, 439, 773
BtsIMutI CAGTG 2 cut(s) 788, 891
BveI ACCTGC 1 cut(s) 109
Cac8I GCNNGC 3 cut(s) 565, 639, 760
CaiI CAGNNNCTG 1 cut(s) 764
Cfr10I RCCGGY 1 cut(s) 637
Cfr13I GGNCC 2 cut(s) 207, 355
Cfr9I CCCGGG 1 cut(s) 429
CseI GACGC 1 cut(s) 121
CsiI ACCWGGT 1 cut(s) 203
Csp6I GTAC 1 cut(s) 402
CviAII CATG 2 cut(s) 661, 812
CviQI GTAC 1 cut(s) 402
DdeI CTNAG 3 cut(s) 468, 740, 897
DpnI GATC 9 cut(s) 147, 252, 282, 473, 625, 690, 711, 849, 891
DpnII GATC 9 cut(s) 145, 250, 280, 471, 623, 688, 709, 847, 889
DrdI GACNNNNNNGTC 1 cut(s) 320
DseDI GACNNNNNNGTC 1 cut(s) 320
EaeI YGGCCR 1 cut(s) 577
Eco24I GRGCYC 1 cut(s) 801
Eco47I GGWCC 1 cut(s) 207
Eco57I CTGAAG 2 cut(s) 180, 510
Eco88I CYCGRG 1 cut(s) 429
EcoRI GAATTC 1 cut(s) 10
EcoRII CCWGG 1 cut(s) 203
EcoT38I GRGCYC 1 cut(s) 801
FaeI CATG 2 cut(s) 664, 815
FaiI YATR 6 cut(s) 267, 497, 572, 662, 779, 813
FalI AAGNNNNNCTT 2 cut(s) 686, 718
FaqI GGGAC 1 cut(s) 744
FatI CATG 2 cut(s) 660, 811
FbaI TGATCA 1 cut(s) 688
Fnu4HI GCNGC 5 cut(s) 101, 116, 308, 358, 447
FokI GGATG 3 cut(s) 299, 446, 760
FriOI GRGCYC 1 cut(s) 801
Fsp4HI GCNGC 5 cut(s) 101, 116, 308, 358, 447
GluI GCNGC 5 cut(s) 101, 116, 308, 358, 447
GsuI CTGGAG 1 cut(s) 277
HaeIII GGCC 2 cut(s) 357, 579
HapII CCGG 3 cut(s) 231, 430, 638
HgaI GACGC 1 cut(s) 121
Hin1II CATG 2 cut(s) 664, 815
HincII GTYRAC 1 cut(s) 619
HindII GTYRAC 1 cut(s) 619
HindIII AAGCTT 2 cut(s) 131, 378
HinfI GANTC 2 cut(s) 521, 699
HpaII CCGG 3 cut(s) 231, 430, 638
Hpy166II GTNNAC 2 cut(s) 210, 619
Hpy188III TCNNGA 2 cut(s) 284, 364
Hpy8I GTNNAC 2 cut(s) 210, 619
HpyAV CCTTC 4 cut(s) 235, 361, 431, 851
HpyCH4III ACNGT 5 cut(s) 584, 595, 792, 807, 886
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 5 cut(s) 118, 307, 419, 758, 872
HpyF10VI GCNNNNNNNGC 5 cut(s) 124, 348, 357, 508, 585
HpyF3I CTNAG 3 cut(s) 468, 740, 897
HpySE526I ACGT 1 cut(s) 93
Hsp92II CATG 2 cut(s) 664, 815
KroI GCCGGC 1 cut(s) 637
KroNI GCCGGC 1 cut(s) 639
Ksp22I TGATCA 1 cut(s) 688
Kzo9I GATC 9 cut(s) 145, 250, 280, 471, 623, 688, 709, 847, 889
LmnI GCTCC 3 cut(s) 41, 97, 423
Lsp1109I GCAGC 4 cut(s) 87, 102, 319, 458
LweI GCATC 2 cut(s) 243, 491
MabI ACCWGGT 1 cut(s) 203
MaeII ACGT 1 cut(s) 93
MaeIII GTNAC 1 cut(s) 656
MalI GATC 9 cut(s) 147, 252, 282, 473, 625, 690, 711, 849, 891
MboI GATC 9 cut(s) 145, 250, 280, 471, 623, 688, 709, 847, 889
MboII GAAGA 3 cut(s) 316, 516, 694
MflI RGATCY 2 cut(s) 623, 889
MhlI GDGCHC 3 cut(s) 129, 428, 801
MlsI TGGCCA 1 cut(s) 579
MluCI AATT 8 cut(s) 10, 180, 259, 271, 514, 651, 780, 852
MluNI TGGCCA 1 cut(s) 579
Mox20I TGGCCA 1 cut(s) 579
MroNI GCCGGC 1 cut(s) 637
MscI TGGCCA 1 cut(s) 579
Msp20I TGGCCA 1 cut(s) 579
MspI CCGG 3 cut(s) 231, 430, 638
MspR9I CCNGG 3 cut(s) 205, 430, 431
MvaI CCWGG 1 cut(s) 205
MvnI CGCG 1 cut(s) 165
MwoI GCNNNNNNNGC 5 cut(s) 124, 348, 357, 508, 585
NaeI GCCGGC 1 cut(s) 639
NciI CCSGG 2 cut(s) 430, 431
NdeII GATC 9 cut(s) 145, 250, 280, 471, 623, 688, 709, 847, 889
NgoMIV GCCGGC 1 cut(s) 637
NlaIII CATG 2 cut(s) 664, 815
NlaIV GGNNCC 3 cut(s) 245, 356, 891
PdiI GCCGGC 1 cut(s) 639
PfeI GAWTC 2 cut(s) 521, 699
PkrI GCNGC 5 cut(s) 102, 117, 309, 359, 448
Psp6I CCWGG 1 cut(s) 203
PspGI CCWGG 1 cut(s) 203
PspN4I GGNNCC 3 cut(s) 245, 356, 891
PspPI GGNCC 2 cut(s) 207, 355
PstI CTGCAG 3 cut(s) 120, 309, 421
PstNI CAGNNNCTG 1 cut(s) 764
PsuI RGATCY 2 cut(s) 623, 889
RsaI GTAC 1 cut(s) 403
RsaNI GTAC 1 cut(s) 402
SatI GCNGC 5 cut(s) 101, 116, 308, 358, 447
Sau3AI GATC 9 cut(s) 145, 250, 280, 471, 623, 688, 709, 847, 889
Sau96I GGNCC 2 cut(s) 207, 355
SbfI CCTGCAGG 1 cut(s) 421
ScaI AGTACT 1 cut(s) 403
ScrFI CCNGG 3 cut(s) 205, 430, 431
SdaI CCTGCAGG 1 cut(s) 421
SduI GDGCHC 3 cut(s) 129, 428, 801
SexAI ACCWGGT 1 cut(s) 203
SfaNI GCATC 2 cut(s) 243, 491
SfcI CTRYAG 3 cut(s) 116, 305, 417
SinI GGWCC 1 cut(s) 207
SmaI CCCGGG 1 cut(s) 431
Sse8387I CCTGCAGG 1 cut(s) 421
Sse9I AATT 8 cut(s) 10, 180, 259, 271, 514, 651, 780, 852
SsiI CCGC 7 cut(s) 60, 66, 72, 78, 165, 349, 358
StyD4I CCNGG 3 cut(s) 203, 428, 429
TaaI ACNGT 5 cut(s) 584, 595, 792, 807, 886
TaiI ACGT 1 cut(s) 96
TaqI TCGA 5 cut(s) 144, 249, 312, 397, 850
TasI AATT 8 cut(s) 10, 180, 259, 271, 514, 651, 780, 852
TatI WGTACW 1 cut(s) 401
TauI GCSGC 1 cut(s) 360
TfiI GAWTC 2 cut(s) 521, 699
TscAI CASTG 2 cut(s) 795, 891
TseI GCWGC 4 cut(s) 100, 115, 307, 446
TspDTI ATGAA 6 cut(s) 450, 484, 492, 559, 663, 828
TspMI CCCGGG 1 cut(s) 429
TspRI CASTG 2 cut(s) 795, 891
VpaK11BI GGWCC 1 cut(s) 207
XapI RAATTY 3 cut(s) 10, 180, 514
XmaI CCCGGG 1 cut(s) 429
ZrmI AGTACT 1 cut(s) 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.