Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035629.1

Orthogroup ID

OG0011498

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 3510

Gene Structure 3510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035629.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ggtggcggtggcggtggcggtggaggtaatgacgtggagctgctttgtaagacgctgcaggttgagcacaagcttttctacttcgatctcaaagagaaccctcgcggtcgttatctcaaaatttctgaaaagacttcagccaccaggtccactatcatcgttcccttctccggcatctcgtggttcctcgatctcttcaattactatgtcaattcggacgatcaggatgtcttcagcaaggaactgcagctcgacacaaaggtcttctactttgacattggcgagaaccgcaggggccgcttcttgaaggtatccgaagcttctgttagtagaaatcgaagtactatcattgttcctgcagggagcacccgggatgaagggtgggcagcatttaggaacattttggctgagatcaatgaagcatcaaggcttttcatactgcctaatcagcaaagttctgaatcttcagagcgacttgttgggctttcagacgatgtaggtgctggcttcatatctggccacagtagccaaactgtgccaacttctgaactgaatattgacagatccacagagttgccggcacaagatgaaattggtaacatgggggtttctaaagtgattagagctgatcaaaagagattcttctttgatcttggaaacaataacaggggacattttctaagaatatcggaggttgcaggctctgataggtcatccataattctcccactgtcagggctcaaacagttccatgaaatagtgggtcattttgtggagataaccaaagatcgaattgaaggaatgacaggtgcaaatgttcgcacagtggatcctcctcagagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0010035 GO:0010038 GO:0042221 GO:0044424 GO:0044464 GO:0046686 GO:0050896 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PurA

Protein Analysis

281

Amino Acids

31.16

Weight (kDa)

5.82

Isoelectric Point (pI)

50.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32080 AT2G32080
fragaria_vesca	FvH4_3g46070 FvH4_3g46070
malus_domestica	MD03G1000100.v1.1 MD11G1000500.v1.1
prunus_persica	Prupe.6G000600_v2.0.a1 Prupe.6G000600_v2.0.a1
pyrus_communis	pycom03g00040 pycom11g00080
rosa_chinensis	RchiOBHm_Chr5g0084131
rosa_laevigata	RLG00000037085
rosa_multiflora	Rmu_sc0035629.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000510
rosa_rugosa	Rorug05G0489400
rosa_samantha	Rh5AG542000 Rh5BG567800 Rh5CG589500 Rh5DG575900
rosa_wichuraiana	Rw5G050420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	260
Acc36I	ACCTGC	1 cut(s)	49
AccII	CGCG	1 cut(s)	105
AciI	CCGC	6 cut(s)	6, 12, 18, 105, 289, 298
AclWI	GGATC	3 cut(s)	558, 824, 837
AcoI	YGGCCR	1 cut(s)	517
AcsI	RAATTY	1 cut(s)	120
AcuI	CTGAAG	3 cut(s)	120, 217, 450
AfaI	GTAC	1 cut(s)	343
AfiI	CCNNNNNNNGG	2 cut(s)	170, 734
AgsI	TTSAA	3 cut(s)	199, 307, 797
AjiI	CACGTC	1 cut(s)	34
AjnI	CCWGG	1 cut(s)	143
AluBI	AGCT	5 cut(s)	40, 73, 250, 320, 626
AluI	AGCT	5 cut(s)	40, 73, 250, 320, 626
Alw21I	GWGCWC	2 cut(s)	69, 368
AlwI	GGATC	3 cut(s)	558, 824, 837
AlwNI	CAGNNNCTG	1 cut(s)	704
Ama87I	CYCGRG	1 cut(s)	369
AoxI	GGCC	2 cut(s)	295, 517
ApeKI	GCWGC	4 cut(s)	40, 55, 247, 386
ApoI	RAATTY	1 cut(s)	120
AspS9I	GGNCC	2 cut(s)	147, 295
AsuC2I	CCSGG	2 cut(s)	370, 371
AvaI	CYCGRG	1 cut(s)	369
AvaII	GGWCC	1 cut(s)	147
BalI	TGGCCA	1 cut(s)	519
BamHI	GGATCC	1 cut(s)	829
BanII	GRGCYC	1 cut(s)	741
BauI	CACGAG	1 cut(s)	178
BbsI	GAAGAC	2 cut(s)	223, 256
Bbv12I	GWGCWC	2 cut(s)	69, 368
BbvI	GCAGC	4 cut(s)	27, 42, 259, 398
BcgI	CGANNNNNNTGC	2 cut(s)	482, 516
BciT130I	CCWGG	1 cut(s)	145
BciVI	GTATCC	1 cut(s)	322
BclI	TGATCA	1 cut(s)	628
BcnI	CCSGG	2 cut(s)	370, 371
BfmI	CTRYAG	3 cut(s)	56, 245, 357
BfuAI	ACCTGC	1 cut(s)	49
BfuI	GTATCC	1 cut(s)	322
BisI	GCNGC	5 cut(s)	41, 56, 248, 298, 387
BlsI	GCNGC	5 cut(s)	42, 57, 249, 299, 388
BmcAI	AGTACT	1 cut(s)	343
Bme1390I	CCNGG	3 cut(s)	145, 370, 371
Bme18I	GGWCC	1 cut(s)	147
BmeT110I	CYCGRG	1 cut(s)	369
BmgBI	CACGTC	1 cut(s)	34
BmgT120I	GGNCC	2 cut(s)	147, 295
BmiI	GGNNCC	3 cut(s)	185, 296, 831
BmrFI	CCNGG	3 cut(s)	145, 370, 371
BmsI	GCATC	2 cut(s)	183, 431
BpiI	GAAGAC	2 cut(s)	223, 256
BpuMI	CCSGG	2 cut(s)	370, 371
BsaJI	CCNNGG	1 cut(s)	369
Bsc4I	CCNNNNNNNGG	2 cut(s)	170, 734
Bse118I	RCCGGY	1 cut(s)	577
BseBI	CCWGG	1 cut(s)	145
BseDI	CCNNGG	1 cut(s)	369
BseGI	GGATG	3 cut(s)	232, 379, 713
BseLI	CCNNNNNNNGG	2 cut(s)	170, 734
BseMII	CTCAG	1 cut(s)	399
BseRI	GAGGAG	1 cut(s)	825
BseXI	GCAGC	4 cut(s)	27, 42, 259, 398
Bsh1236I	CGCG	1 cut(s)	105
Bsh1285I	CGRYCG	1 cut(s)	109
BshFI	GGCC	2 cut(s)	297, 519
BsiEI	CGRYCG	1 cut(s)	109
BsiHKAI	GWGCWC	2 cut(s)	69, 368
BsiHKCI	CYCGRG	1 cut(s)	369
BsiSI	CCGG	3 cut(s)	171, 370, 578
BslFI	GGGAC	1 cut(s)	684
BslI	CCNNNNNNNGG	2 cut(s)	170, 734
BsmFI	GGGAC	1 cut(s)	684
BsnI	GGCC	2 cut(s)	297, 519
BsoBI	CYCGRG	1 cut(s)	369
Bsp1286I	GDGCHC	3 cut(s)	69, 368, 741
Bsp143I	GATC	9 cut(s)	85, 190, 220, 411, 563, 628, 649, 787, 829
BspACI	CCGC	6 cut(s)	6, 12, 18, 105, 289, 298
BspANI	GGCC	2 cut(s)	297, 519
BspCNI	CTCAG	1 cut(s)	400
BspFNI	CGCG	1 cut(s)	105
BspLI	GGNNCC	3 cut(s)	185, 296, 831
BspMAI	CTGCAG	3 cut(s)	60, 249, 361
BspMI	ACCTGC	1 cut(s)	49
BspPI	GGATC	3 cut(s)	558, 824, 837
BsrFI	RCCGGY	1 cut(s)	577
BssAI	RCCGGY	1 cut(s)	577
BssECI	CCNNGG	1 cut(s)	369
BssMI	GATC	9 cut(s)	85, 190, 220, 411, 563, 628, 649, 787, 829
BssSI	CACGAG	1 cut(s)	178
Bst2BI	CACGAG	1 cut(s)	178
Bst2UI	CCWGG	1 cut(s)	145
Bst4CI	ACNGT	5 cut(s)	524, 535, 732, 747, 826
Bst6I	CTCTTC	1 cut(s)	200
BstC8I	GCNNGC	3 cut(s)	505, 579, 700
BstDEI	CTNAG	3 cut(s)	408, 680, 837
BstF5I	GGATG	3 cut(s)	232, 379, 713
BstFNI	CGCG	1 cut(s)	105
BstKTI	GATC	9 cut(s)	88, 193, 223, 414, 566, 631, 652, 790, 832
BstMBI	GATC	9 cut(s)	85, 190, 220, 411, 563, 628, 649, 787, 829
BstMCI	CGRYCG	1 cut(s)	109
BstMWI	GCNNNNNNNGC	5 cut(s)	64, 288, 297, 448, 525
BstNI	CCWGG	1 cut(s)	145
BstSCI	CCNGG	3 cut(s)	143, 368, 369
BstSFI	CTRYAG	3 cut(s)	56, 245, 357
BstUI	CGCG	1 cut(s)	105
BstV1I	GCAGC	4 cut(s)	27, 42, 259, 398
BstV2I	GAAGAC	2 cut(s)	223, 256
BstX2I	RGATCY	2 cut(s)	563, 829
BstYI	RGATCY	2 cut(s)	563, 829
BsuI	GTATCC	1 cut(s)	322
BsuRI	GGCC	2 cut(s)	297, 519
BtrI	CACGTC	1 cut(s)	34
BtsCI	GGATG	3 cut(s)	232, 379, 713
BtsIMutI	CAGTG	2 cut(s)	728, 831
BveI	ACCTGC	1 cut(s)	49
Cac8I	GCNNGC	3 cut(s)	505, 579, 700
CaiI	CAGNNNCTG	1 cut(s)	704
Cfr10I	RCCGGY	1 cut(s)	577
Cfr13I	GGNCC	2 cut(s)	147, 295
Cfr9I	CCCGGG	1 cut(s)	369
CseI	GACGC	1 cut(s)	61
CsiI	ACCWGGT	1 cut(s)	143
Csp6I	GTAC	1 cut(s)	342
CviAII	CATG	2 cut(s)	601, 752
CviQI	GTAC	1 cut(s)	342
DdeI	CTNAG	3 cut(s)	408, 680, 837
DpnI	GATC	9 cut(s)	87, 192, 222, 413, 565, 630, 651, 789, 831
DpnII	GATC	9 cut(s)	85, 190, 220, 411, 563, 628, 649, 787, 829
DrdI	GACNNNNNNGTC	1 cut(s)	260
DseDI	GACNNNNNNGTC	1 cut(s)	260
EaeI	YGGCCR	1 cut(s)	517
Eam1104I	CTCTTC	1 cut(s)	200
EarI	CTCTTC	1 cut(s)	200
Eco24I	GRGCYC	1 cut(s)	741
Eco47I	GGWCC	1 cut(s)	147
Eco57I	CTGAAG	3 cut(s)	120, 217, 450
Eco88I	CYCGRG	1 cut(s)	369
EcoRII	CCWGG	1 cut(s)	143
EcoT38I	GRGCYC	1 cut(s)	741
FaeI	CATG	2 cut(s)	604, 755
FaiI	YATR	6 cut(s)	207, 437, 512, 602, 719, 753
FalI	AAGNNNNNCTT	2 cut(s)	626, 658
FaqI	GGGAC	1 cut(s)	684
FatI	CATG	2 cut(s)	600, 751
FbaI	TGATCA	1 cut(s)	628
Fnu4HI	GCNGC	5 cut(s)	41, 56, 248, 298, 387
FokI	GGATG	3 cut(s)	239, 386, 700
FriOI	GRGCYC	1 cut(s)	741
Fsp4HI	GCNGC	5 cut(s)	41, 56, 248, 298, 387
GluI	GCNGC	5 cut(s)	41, 56, 248, 298, 387
HaeIII	GGCC	2 cut(s)	297, 519
HapII	CCGG	3 cut(s)	171, 370, 578
HgaI	GACGC	1 cut(s)	61
Hin1II	CATG	2 cut(s)	604, 755
HindIII	AAGCTT	2 cut(s)	71, 318
HinfI	GANTC	2 cut(s)	461, 639
HpaII	CCGG	3 cut(s)	171, 370, 578
Hpy166II	GTNNAC	1 cut(s)	150
Hpy188III	TCNNGA	2 cut(s)	224, 304
Hpy8I	GTNNAC	1 cut(s)	150
HpyAV	CCTTC	4 cut(s)	175, 301, 371, 791
HpyCH4III	ACNGT	5 cut(s)	524, 535, 732, 747, 826
HpyCH4IV	ACGT	1 cut(s)	33
HpyCH4V	TGCA	5 cut(s)	58, 247, 359, 698, 812
HpyF10VI	GCNNNNNNNGC	5 cut(s)	64, 288, 297, 448, 525
HpyF3I	CTNAG	3 cut(s)	408, 680, 837
HpySE526I	ACGT	1 cut(s)	33
Hsp92II	CATG	2 cut(s)	604, 755
KroI	GCCGGC	1 cut(s)	577
KroNI	GCCGGC	1 cut(s)	579
Ksp22I	TGATCA	1 cut(s)	628
Kzo9I	GATC	9 cut(s)	85, 190, 220, 411, 563, 628, 649, 787, 829
LmnI	GCTCC	2 cut(s)	37, 363
Lsp1109I	GCAGC	4 cut(s)	27, 42, 259, 398
LweI	GCATC	2 cut(s)	183, 431
MabI	ACCWGGT	1 cut(s)	143
MaeII	ACGT	1 cut(s)	33
MaeIII	GTNAC	1 cut(s)	596
MalI	GATC	9 cut(s)	87, 192, 222, 413, 565, 630, 651, 789, 831
MboI	GATC	9 cut(s)	85, 190, 220, 411, 563, 628, 649, 787, 829
MboII	GAAGA	5 cut(s)	187, 223, 256, 456, 634
MflI	RGATCY	2 cut(s)	563, 829
MhlI	GDGCHC	3 cut(s)	69, 368, 741
MlsI	TGGCCA	1 cut(s)	519
MluCI	AATT	6 cut(s)	120, 199, 211, 591, 720, 792
MluNI	TGGCCA	1 cut(s)	519
MnlI	CCTC	6 cut(s)	17, 111, 197, 685, 843, 846
Mox20I	TGGCCA	1 cut(s)	519
MroNI	GCCGGC	1 cut(s)	577
MscI	TGGCCA	1 cut(s)	519
Msp20I	TGGCCA	1 cut(s)	519
MspI	CCGG	3 cut(s)	171, 370, 578
MspR9I	CCNGG	3 cut(s)	145, 370, 371
MvaI	CCWGG	1 cut(s)	145
MvnI	CGCG	1 cut(s)	105
MwoI	GCNNNNNNNGC	5 cut(s)	64, 288, 297, 448, 525
NaeI	GCCGGC	1 cut(s)	579
NciI	CCSGG	2 cut(s)	370, 371
NdeII	GATC	9 cut(s)	85, 190, 220, 411, 563, 628, 649, 787, 829
NgoMIV	GCCGGC	1 cut(s)	577
NlaIII	CATG	2 cut(s)	604, 755
NlaIV	GGNNCC	3 cut(s)	185, 296, 831
PdiI	GCCGGC	1 cut(s)	579
PfeI	GAWTC	2 cut(s)	461, 639
PkrI	GCNGC	5 cut(s)	42, 57, 249, 299, 388
Psp6I	CCWGG	1 cut(s)	143
PspGI	CCWGG	1 cut(s)	143
PspN4I	GGNNCC	3 cut(s)	185, 296, 831
PspPI	GGNCC	2 cut(s)	147, 295
PstI	CTGCAG	3 cut(s)	60, 249, 361
PstNI	CAGNNNCTG	1 cut(s)	704
PsuI	RGATCY	2 cut(s)	563, 829
RsaI	GTAC	1 cut(s)	343
RsaNI	GTAC	1 cut(s)	342
SatI	GCNGC	5 cut(s)	41, 56, 248, 298, 387
Sau3AI	GATC	9 cut(s)	85, 190, 220, 411, 563, 628, 649, 787, 829
Sau96I	GGNCC	2 cut(s)	147, 295
SbfI	CCTGCAGG	1 cut(s)	361
ScaI	AGTACT	1 cut(s)	343
ScrFI	CCNGG	3 cut(s)	145, 370, 371
SdaI	CCTGCAGG	1 cut(s)	361
SduI	GDGCHC	3 cut(s)	69, 368, 741
SexAI	ACCWGGT	1 cut(s)	143
SfaNI	GCATC	2 cut(s)	183, 431
SfcI	CTRYAG	3 cut(s)	56, 245, 357
SinI	GGWCC	1 cut(s)	147
SmaI	CCCGGG	1 cut(s)	371
Sse8387I	CCTGCAGG	1 cut(s)	361
Sse9I	AATT	6 cut(s)	120, 199, 211, 591, 720, 792
SsiI	CCGC	6 cut(s)	6, 12, 18, 105, 289, 298
SspI	AATATT	1 cut(s)	556
StyD4I	CCNGG	3 cut(s)	143, 368, 369
TaaI	ACNGT	5 cut(s)	524, 535, 732, 747, 826
TaiI	ACGT	1 cut(s)	36
TaqI	TCGA	5 cut(s)	84, 189, 252, 337, 790
TasI	AATT	6 cut(s)	120, 199, 211, 591, 720, 792
TatI	WGTACW	1 cut(s)	341
TauI	GCSGC	1 cut(s)	300
TfiI	GAWTC	2 cut(s)	461, 639
TscAI	CASTG	2 cut(s)	735, 831
TseI	GCWGC	4 cut(s)	40, 55, 247, 386
TspDTI	ATGAA	6 cut(s)	390, 424, 432, 499, 603, 768
TspMI	CCCGGG	1 cut(s)	369
TspRI	CASTG	2 cut(s)	735, 831
VpaK11BI	GGWCC	1 cut(s)	147
XapI	RAATTY	1 cut(s)	120
XmaI	CCCGGG	1 cut(s)	369
ZrmI	AGTACT	1 cut(s)	343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.