Rw5G050420

Transcription factor Pur-alpha

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0011498
Physical Location & Seq
Forward (+)
86978233 .. 86979283
1051 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G050420.1

Sequence Viewer

Length: 600 bp
ATGGAACTCTATCCTACTTCCGATTTTTTTCTTCAAGGTGAATGGTGCATAGCTGAGATCAAGGTATCCGAAGCTTCTGTTAGTAGAAATCGAAGTACTATCATTGTTCCTGCAGGGAGCACCCGGGATGAAGGGTGGGCAGCATTTAGGAACATTTTGGCTGAGATCAATGAAGCATCAAGGCTTTTCATACTGCCTAATCAGCAAAGTTCTGAATCTTCAGAGCGACTTGTTGGGCTTTCAGACGATGTAGGTGCTGGCTTCATATCTGGCCACAGTAGCCAAACTGTGCCAACTTCTGAACTGAATATTGACAGATCCACAGAGTTGCCGGCACAAGATGAAATTGGTAACATGGGGGTTTCTAAAGTGATTAGAGCTGATCAAAAGAGATTCTTCTTTGATCTTGGAAACAATAACAGGGGACATTTTCTAAGAATATCGGAGGTTGCAGGCTCTGATAGGTCATCCATAATTCTCCCACTGTCAGGGCTCAAACAGTTCCATGAAATAGTGGGTCATTTTGTGGAGATAACCAAAGATCGAATTGAAGGAATGACAGGTGCAAATGTTCGCACAGTGGATCCTCCTCAGAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0010035 GO:0010038 GO:0042221 GO:0044424 GO:0044464 GO:0046686 GO:0050896 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PurA

Protein Analysis

199

Amino Acids

21.95

Weight (kDa)

5.15

Isoelectric Point (pI)

52.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PurA PF04845 113 - 176 1.3e-12 PurA ssDNA and RNA-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011498)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G32080 AT2G32080
fragaria_vesca FvH4_3g46070 FvH4_3g46070
malus_domestica MD03G1000100.v1.1 MD11G1000500.v1.1
prunus_persica Prupe.6G000600_v2.0.a1 Prupe.6G000600_v2.0.a1
pyrus_communis pycom03g00040 pycom11g00080
rosa_chinensis RchiOBHm_Chr5g0084131
rosa_laevigata RLG00000037085
rosa_multiflora Rmu_sc0035629.1_g000001
rosa_roxburghii Rroxscaffold_1G00000510
rosa_rugosa Rorug05G0489400
rosa_samantha Rh5AG542000 Rh5BG567800 Rh5CG589500 Rh5DG575900
rosa_wichuraiana Rw5G050420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 312, 578, 591
AcoI YGGCCR 1 cut(s) 271
AcuI CTGAAG 1 cut(s) 204
AfaI GTAC 1 cut(s) 97
AfiI CCNNNNNNNGG 1 cut(s) 488
AgsI TTSAA 2 cut(s) 35, 551
AluBI AGCT 3 cut(s) 53, 74, 380
AluI AGCT 3 cut(s) 53, 74, 380
Alw21I GWGCWC 1 cut(s) 122
AlwI GGATC 3 cut(s) 312, 578, 591
AlwNI CAGNNNCTG 1 cut(s) 458
Ama87I CYCGRG 1 cut(s) 123
AoxI GGCC 1 cut(s) 271
ApeKI GCWGC 1 cut(s) 140
AsuC2I CCSGG 2 cut(s) 124, 125
AsuHPI GGTGA 1 cut(s) 50
AvaI CYCGRG 1 cut(s) 123
BalI TGGCCA 1 cut(s) 273
BamHI GGATCC 1 cut(s) 583
BanII GRGCYC 1 cut(s) 495
Bbv12I GWGCWC 1 cut(s) 122
BbvI GCAGC 1 cut(s) 152
BcgI CGANNNNNNTGC 2 cut(s) 236, 270
BciVI GTATCC 1 cut(s) 76
BclI TGATCA 1 cut(s) 382
BcnI CCSGG 2 cut(s) 124, 125
BfmI CTRYAG 1 cut(s) 111
BfuI GTATCC 1 cut(s) 76
BisI GCNGC 1 cut(s) 141
BlsI GCNGC 1 cut(s) 142
BmcAI AGTACT 1 cut(s) 97
Bme1390I CCNGG 2 cut(s) 124, 125
BmeT110I CYCGRG 1 cut(s) 123
BmiI GGNNCC 1 cut(s) 585
BmrFI CCNGG 2 cut(s) 124, 125
BmsI GCATC 1 cut(s) 185
BpuMI CCSGG 2 cut(s) 124, 125
BsaJI CCNNGG 1 cut(s) 123
Bsc4I CCNNNNNNNGG 1 cut(s) 488
Bse118I RCCGGY 1 cut(s) 331
BseDI CCNNGG 1 cut(s) 123
BseGI GGATG 2 cut(s) 133, 467
BseLI CCNNNNNNNGG 1 cut(s) 488
BseMII CTCAG 2 cut(s) 45, 153
BseRI GAGGAG 1 cut(s) 579
BseXI GCAGC 1 cut(s) 152
BshFI GGCC 1 cut(s) 273
BsiHKAI GWGCWC 1 cut(s) 122
BsiHKCI CYCGRG 1 cut(s) 123
BsiSI CCGG 2 cut(s) 124, 332
BslFI GGGAC 1 cut(s) 438
BslI CCNNNNNNNGG 1 cut(s) 488
BsmFI GGGAC 1 cut(s) 438
BsnI GGCC 1 cut(s) 273
BsoBI CYCGRG 1 cut(s) 123
Bsp1286I GDGCHC 2 cut(s) 122, 495
Bsp143I GATC 7 cut(s) 57, 165, 317, 382, 403, 541, 583
BspANI GGCC 1 cut(s) 273
BspCNI CTCAG 2 cut(s) 46, 154
BspLI GGNNCC 1 cut(s) 585
BspMAI CTGCAG 1 cut(s) 115
BspPI GGATC 3 cut(s) 312, 578, 591
BsrFI RCCGGY 1 cut(s) 331
BssAI RCCGGY 1 cut(s) 331
BssECI CCNNGG 1 cut(s) 123
BssMI GATC 7 cut(s) 57, 165, 317, 382, 403, 541, 583
Bst4CI ACNGT 5 cut(s) 278, 289, 486, 501, 580
BstC8I GCNNGC 3 cut(s) 259, 333, 454
BstDEI CTNAG 4 cut(s) 54, 162, 434, 591
BstF5I GGATG 2 cut(s) 133, 467
BstKTI GATC 7 cut(s) 60, 168, 320, 385, 406, 544, 586
BstMBI GATC 7 cut(s) 57, 165, 317, 382, 403, 541, 583
BstMWI GCNNNNNNNGC 2 cut(s) 202, 279
BstSCI CCNGG 2 cut(s) 122, 123
BstSFI CTRYAG 1 cut(s) 111
BstV1I GCAGC 1 cut(s) 152
BstX2I RGATCY 2 cut(s) 317, 583
BstYI RGATCY 2 cut(s) 317, 583
BsuI GTATCC 1 cut(s) 76
BsuRI GGCC 1 cut(s) 273
BtsCI GGATG 2 cut(s) 133, 467
BtsIMutI CAGTG 2 cut(s) 482, 585
Cac8I GCNNGC 3 cut(s) 259, 333, 454
CaiI CAGNNNCTG 1 cut(s) 458
Cfr10I RCCGGY 1 cut(s) 331
Cfr9I CCCGGG 1 cut(s) 123
Csp6I GTAC 1 cut(s) 96
CviAII CATG 2 cut(s) 355, 506
CviQI GTAC 1 cut(s) 96
DdeI CTNAG 4 cut(s) 54, 162, 434, 591
DpnI GATC 7 cut(s) 59, 167, 319, 384, 405, 543, 585
DpnII GATC 7 cut(s) 57, 165, 317, 382, 403, 541, 583
EaeI YGGCCR 1 cut(s) 271
Eco24I GRGCYC 1 cut(s) 495
Eco57I CTGAAG 1 cut(s) 204
Eco88I CYCGRG 1 cut(s) 123
EcoT38I GRGCYC 1 cut(s) 495
FaeI CATG 2 cut(s) 358, 509
FaiI YATR 6 cut(s) 50, 191, 266, 356, 473, 507
FalI AAGNNNNNCTT 2 cut(s) 380, 412
FaqI GGGAC 1 cut(s) 438
FatI CATG 2 cut(s) 354, 505
FbaI TGATCA 1 cut(s) 382
Fnu4HI GCNGC 1 cut(s) 141
FokI GGATG 2 cut(s) 140, 454
FriOI GRGCYC 1 cut(s) 495
Fsp4HI GCNGC 1 cut(s) 141
GluI GCNGC 1 cut(s) 141
HaeIII GGCC 1 cut(s) 273
HapII CCGG 2 cut(s) 124, 332
Hin1II CATG 2 cut(s) 358, 509
HindIII AAGCTT 1 cut(s) 72
HinfI GANTC 2 cut(s) 215, 393
HpaII CCGG 2 cut(s) 124, 332
HphI GGTGA 1 cut(s) 50
Hpy188I TCNGA 9 cut(s) 22, 70, 214, 223, 244, 301, 445, 460, 594
HpyAV CCTTC 2 cut(s) 125, 545
HpyCH4III ACNGT 5 cut(s) 278, 289, 486, 501, 580
HpyCH4V TGCA 4 cut(s) 48, 113, 452, 566
HpyF10VI GCNNNNNNNGC 2 cut(s) 202, 279
HpyF3I CTNAG 4 cut(s) 54, 162, 434, 591
Hsp92II CATG 2 cut(s) 358, 509
KroI GCCGGC 1 cut(s) 331
KroNI GCCGGC 1 cut(s) 333
Ksp22I TGATCA 1 cut(s) 382
Kzo9I GATC 7 cut(s) 57, 165, 317, 382, 403, 541, 583
LmnI GCTCC 1 cut(s) 117
Lsp1109I GCAGC 1 cut(s) 152
LweI GCATC 1 cut(s) 185
MaeIII GTNAC 1 cut(s) 350
MalI GATC 7 cut(s) 59, 167, 319, 384, 405, 543, 585
MboI GATC 7 cut(s) 57, 165, 317, 382, 403, 541, 583
MboII GAAGA 3 cut(s) 23, 210, 388
MflI RGATCY 2 cut(s) 317, 583
MhlI GDGCHC 2 cut(s) 122, 495
MlsI TGGCCA 1 cut(s) 273
MluCI AATT 3 cut(s) 345, 474, 546
MluNI TGGCCA 1 cut(s) 273
MnlI CCTC 3 cut(s) 439, 597, 600
Mox20I TGGCCA 1 cut(s) 273
MroNI GCCGGC 1 cut(s) 331
MscI TGGCCA 1 cut(s) 273
Msp20I TGGCCA 1 cut(s) 273
MspI CCGG 2 cut(s) 124, 332
MspR9I CCNGG 2 cut(s) 124, 125
MwoI GCNNNNNNNGC 2 cut(s) 202, 279
NaeI GCCGGC 1 cut(s) 333
NciI CCSGG 2 cut(s) 124, 125
NdeII GATC 7 cut(s) 57, 165, 317, 382, 403, 541, 583
NgoMIV GCCGGC 1 cut(s) 331
NlaIII CATG 2 cut(s) 358, 509
NlaIV GGNNCC 1 cut(s) 585
PdiI GCCGGC 1 cut(s) 333
PfeI GAWTC 2 cut(s) 215, 393
PkrI GCNGC 1 cut(s) 142
PspN4I GGNNCC 1 cut(s) 585
PstI CTGCAG 1 cut(s) 115
PstNI CAGNNNCTG 1 cut(s) 458
PsuI RGATCY 2 cut(s) 317, 583
RsaI GTAC 1 cut(s) 97
RsaNI GTAC 1 cut(s) 96
SatI GCNGC 1 cut(s) 141
Sau3AI GATC 7 cut(s) 57, 165, 317, 382, 403, 541, 583
SbfI CCTGCAGG 1 cut(s) 115
ScaI AGTACT 1 cut(s) 97
ScrFI CCNGG 2 cut(s) 124, 125
SdaI CCTGCAGG 1 cut(s) 115
SduI GDGCHC 2 cut(s) 122, 495
SetI ASST 9 cut(s) 40, 55, 66, 76, 256, 382, 450, 467, 565
SfaNI GCATC 1 cut(s) 185
SfcI CTRYAG 1 cut(s) 111
SmaI CCCGGG 1 cut(s) 125
Sse8387I CCTGCAGG 1 cut(s) 115
Sse9I AATT 3 cut(s) 345, 474, 546
SspI AATATT 1 cut(s) 310
StyD4I CCNGG 2 cut(s) 122, 123
TaaI ACNGT 5 cut(s) 278, 289, 486, 501, 580
TaqI TCGA 2 cut(s) 91, 544
TasI AATT 3 cut(s) 345, 474, 546
TatI WGTACW 1 cut(s) 95
TfiI GAWTC 2 cut(s) 215, 393
TscAI CASTG 2 cut(s) 489, 585
TseI GCWGC 1 cut(s) 140
TspDTI ATGAA 6 cut(s) 144, 178, 186, 253, 357, 522
TspMI CCCGGG 1 cut(s) 123
TspRI CASTG 2 cut(s) 489, 585
XmaI CCCGGG 1 cut(s) 123
ZrmI AGTACT 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.