RchiOBHm_Chr5g0084131

Transcription factor Pur-alpha

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0011498
Physical Location & Seq
Forward (+)
89752877 .. 89757378
4502 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35822

Sequence Viewer

Length: 858 bp
ATGGAAGGGAATTCGGGGGGCGTAGGTGGAGGAGGAGGAGCAATAGCAGGAGGTGGCGGTGGCGGTGGAGGTAATGACGTGGAGCTGCTTTGTAAGACGCTGCAGGTTGAGCACAAGCTTTTCTACTTCGATCTCAAAGAGAACCCTCGCGGTCGTTATCTCAAAATTTCTGAAAAGACTTCAGCCACCAGGTCCACTATCATCGTTCCCTTCTCCGGCATCTCGTGGTTCCTCGATCTCTTCAATTACTATGTCAATTCGGACGATCAGGATGTCTTCTACTTTGACATTGGCGAGAACCGCAGGGGCCGCTTCTTGAAGGTATCCGAAGCTTCTGTTAGTAGAAATCGAAGTACTATCATTGTTCCTGCAGGGAGCACCCGGGATGAAGGGTGGGCAGCATTTAGGAACATTTTGGCTGAGATCAATGAAGCATCAAGGCTTTTCATACTGCCTAATCAGCAAAGTTCTGAATCTTCAGAGCGACTTGTTGGGCTTTCAGACGATGTAGGTGCTGGCTTCATATCTGGCCACAGTAGCCAAACTGTGCCAACTTCTGAACTGAATATTGACAGATCCACAGAGTTGCCGGCACAAGATGAAATTGGTAACATGGGGGTTTCTAAAGTGATTAGAGCTGATCAAAAGAGATTCTTCTTTGATCTTGGAAACAATAACAGGGGACATTTTCTAAGAATATCGGAGGTTGCAGGCTCTGATAGGTCATCCATAATTCTCCCACTGTCAGGGCTCAAACAGTTCCATGAAATAGTGGGTCATTTTGTGGAGATAACCAAAGATCGAATTGAAGGAATGACAGGTGCAAATGTTCGCACAGTGGATCCTCCTCAGAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0010035 GO:0010038 GO:0042221 GO:0044424 GO:0044464 GO:0046686 GO:0050896 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PurA

Protein Analysis

285

Amino Acids

31.08

Weight (kDa)

5.64

Isoelectric Point (pI)

50.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PurA PF04845 32 - 86 7.6e-09 PurA ssDNA and RNA-binding protein
PurA PF04845 90 - 144 4.1e-07 PurA ssDNA and RNA-binding protein
PurA PF04845 199 - 262 2.9e-12 PurA ssDNA and RNA-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011498)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G32080 AT2G32080
fragaria_vesca FvH4_3g46070 FvH4_3g46070
malus_domestica MD03G1000100.v1.1 MD11G1000500.v1.1
prunus_persica Prupe.6G000600_v2.0.a1 Prupe.6G000600_v2.0.a1
pyrus_communis pycom03g00040 pycom11g00080
rosa_chinensis RchiOBHm_Chr5g0084131
rosa_laevigata RLG00000037085
rosa_multiflora Rmu_sc0035629.1_g000001
rosa_roxburghii Rroxscaffold_1G00000510
rosa_rugosa Rorug05G0489400
rosa_samantha Rh5AG542000 Rh5BG567800 Rh5CG589500 Rh5DG575900
rosa_wichuraiana Rw5G050420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 94
AccII CGCG 1 cut(s) 150
AciI CCGC 5 cut(s) 57, 63, 150, 301, 310
AclWI GGATC 3 cut(s) 570, 836, 849
AcoI YGGCCR 1 cut(s) 529
AcsI RAATTY 2 cut(s) 10, 165
AcuI CTGAAG 2 cut(s) 165, 462
AfaI GTAC 1 cut(s) 355
AfiI CCNNNNNNNGG 2 cut(s) 215, 746
AgsI TTSAA 3 cut(s) 244, 319, 809
AjiI CACGTC 1 cut(s) 79
AjnI CCWGG 1 cut(s) 188
AluBI AGCT 4 cut(s) 85, 118, 332, 638
AluI AGCT 4 cut(s) 85, 118, 332, 638
Alw21I GWGCWC 2 cut(s) 114, 380
AlwI GGATC 3 cut(s) 570, 836, 849
AlwNI CAGNNNCTG 1 cut(s) 716
Ama87I CYCGRG 1 cut(s) 381
AoxI GGCC 2 cut(s) 307, 529
ApeKI GCWGC 3 cut(s) 85, 100, 398
ApoI RAATTY 2 cut(s) 10, 165
AspS9I GGNCC 2 cut(s) 192, 307
AsuC2I CCSGG 2 cut(s) 382, 383
AvaI CYCGRG 1 cut(s) 381
AvaII GGWCC 1 cut(s) 192
BalI TGGCCA 1 cut(s) 531
BamHI GGATCC 1 cut(s) 841
BanII GRGCYC 1 cut(s) 753
BauI CACGAG 1 cut(s) 223
BbsI GAAGAC 1 cut(s) 268
Bbv12I GWGCWC 2 cut(s) 114, 380
BbvI GCAGC 3 cut(s) 72, 87, 410
BcgI CGANNNNNNTGC 2 cut(s) 494, 528
BciT130I CCWGG 1 cut(s) 190
BciVI GTATCC 1 cut(s) 334
BclI TGATCA 1 cut(s) 640
BcnI CCSGG 2 cut(s) 382, 383
BfmI CTRYAG 2 cut(s) 101, 369
BfuAI ACCTGC 1 cut(s) 94
BfuI GTATCC 1 cut(s) 334
BisI GCNGC 4 cut(s) 86, 101, 310, 399
BlsI GCNGC 4 cut(s) 87, 102, 311, 400
BmcAI AGTACT 1 cut(s) 355
Bme1390I CCNGG 3 cut(s) 190, 382, 383
Bme18I GGWCC 1 cut(s) 192
BmeT110I CYCGRG 1 cut(s) 381
BmgBI CACGTC 1 cut(s) 79
BmgT120I GGNCC 2 cut(s) 192, 307
BmiI GGNNCC 3 cut(s) 230, 308, 843
BmrFI CCNGG 3 cut(s) 190, 382, 383
BmsI GCATC 2 cut(s) 228, 443
BpiI GAAGAC 1 cut(s) 268
BpuMI CCSGG 2 cut(s) 382, 383
BsaJI CCNNGG 1 cut(s) 381
Bsc4I CCNNNNNNNGG 2 cut(s) 215, 746
Bse118I RCCGGY 1 cut(s) 589
BseBI CCWGG 1 cut(s) 190
BseDI CCNNGG 1 cut(s) 381
BseGI GGATG 3 cut(s) 277, 391, 725
BseLI CCNNNNNNNGG 2 cut(s) 215, 746
BseMII CTCAG 1 cut(s) 411
BseRI GAGGAG 4 cut(s) 45, 48, 51, 837
BseXI GCAGC 3 cut(s) 72, 87, 410
Bsh1236I CGCG 1 cut(s) 150
Bsh1285I CGRYCG 1 cut(s) 154
BshFI GGCC 2 cut(s) 309, 531
BsiEI CGRYCG 1 cut(s) 154
BsiHKAI GWGCWC 2 cut(s) 114, 380
BsiHKCI CYCGRG 1 cut(s) 381
BsiSI CCGG 3 cut(s) 216, 382, 590
BslFI GGGAC 1 cut(s) 696
BslI CCNNNNNNNGG 2 cut(s) 215, 746
BsmFI GGGAC 1 cut(s) 696
BsnI GGCC 2 cut(s) 309, 531
BsoBI CYCGRG 1 cut(s) 381
Bsp1286I GDGCHC 3 cut(s) 114, 380, 753
Bsp143I GATC 9 cut(s) 130, 235, 265, 423, 575, 640, 661, 799, 841
BspACI CCGC 5 cut(s) 57, 63, 150, 301, 310
BspANI GGCC 2 cut(s) 309, 531
BspCNI CTCAG 1 cut(s) 412
BspFNI CGCG 1 cut(s) 150
BspLI GGNNCC 3 cut(s) 230, 308, 843
BspMAI CTGCAG 2 cut(s) 105, 373
BspMI ACCTGC 1 cut(s) 94
BspPI GGATC 3 cut(s) 570, 836, 849
BsrFI RCCGGY 1 cut(s) 589
BssAI RCCGGY 1 cut(s) 589
BssECI CCNNGG 1 cut(s) 381
BssMI GATC 9 cut(s) 130, 235, 265, 423, 575, 640, 661, 799, 841
BssSI CACGAG 1 cut(s) 223
Bst2BI CACGAG 1 cut(s) 223
Bst2UI CCWGG 1 cut(s) 190
Bst4CI ACNGT 5 cut(s) 536, 547, 744, 759, 838
Bst6I CTCTTC 1 cut(s) 245
BstC8I GCNNGC 3 cut(s) 517, 591, 712
BstDEI CTNAG 3 cut(s) 420, 692, 849
BstF5I GGATG 3 cut(s) 277, 391, 725
BstFNI CGCG 1 cut(s) 150
BstKTI GATC 9 cut(s) 133, 238, 268, 426, 578, 643, 664, 802, 844
BstMBI GATC 9 cut(s) 130, 235, 265, 423, 575, 640, 661, 799, 841
BstMCI CGRYCG 1 cut(s) 154
BstMWI GCNNNNNNNGC 5 cut(s) 109, 300, 309, 460, 537
BstNI CCWGG 1 cut(s) 190
BstSCI CCNGG 3 cut(s) 188, 380, 381
BstSFI CTRYAG 2 cut(s) 101, 369
BstUI CGCG 1 cut(s) 150
BstV1I GCAGC 3 cut(s) 72, 87, 410
BstV2I GAAGAC 1 cut(s) 268
BstX2I RGATCY 2 cut(s) 575, 841
BstYI RGATCY 2 cut(s) 575, 841
BsuI GTATCC 1 cut(s) 334
BsuRI GGCC 2 cut(s) 309, 531
BtrI CACGTC 1 cut(s) 79
BtsCI GGATG 3 cut(s) 277, 391, 725
BtsIMutI CAGTG 2 cut(s) 740, 843
BveI ACCTGC 1 cut(s) 94
Cac8I GCNNGC 3 cut(s) 517, 591, 712
CaiI CAGNNNCTG 1 cut(s) 716
Cfr10I RCCGGY 1 cut(s) 589
Cfr13I GGNCC 2 cut(s) 192, 307
Cfr9I CCCGGG 1 cut(s) 381
CseI GACGC 1 cut(s) 106
CsiI ACCWGGT 1 cut(s) 188
Csp6I GTAC 1 cut(s) 354
CviAII CATG 2 cut(s) 613, 764
CviQI GTAC 1 cut(s) 354
DdeI CTNAG 3 cut(s) 420, 692, 849
DpnI GATC 9 cut(s) 132, 237, 267, 425, 577, 642, 663, 801, 843
DpnII GATC 9 cut(s) 130, 235, 265, 423, 575, 640, 661, 799, 841
EaeI YGGCCR 1 cut(s) 529
Eam1104I CTCTTC 1 cut(s) 245
EarI CTCTTC 1 cut(s) 245
Eco24I GRGCYC 1 cut(s) 753
Eco47I GGWCC 1 cut(s) 192
Eco57I CTGAAG 2 cut(s) 165, 462
Eco88I CYCGRG 1 cut(s) 381
EcoRI GAATTC 1 cut(s) 10
EcoRII CCWGG 1 cut(s) 188
EcoT38I GRGCYC 1 cut(s) 753
FaeI CATG 2 cut(s) 616, 767
FaiI YATR 6 cut(s) 252, 449, 524, 614, 731, 765
FalI AAGNNNNNCTT 2 cut(s) 638, 670
FaqI GGGAC 1 cut(s) 696
FatI CATG 2 cut(s) 612, 763
FbaI TGATCA 1 cut(s) 640
Fnu4HI GCNGC 4 cut(s) 86, 101, 310, 399
FokI GGATG 3 cut(s) 284, 398, 712
FriOI GRGCYC 1 cut(s) 753
Fsp4HI GCNGC 4 cut(s) 86, 101, 310, 399
GluI GCNGC 4 cut(s) 86, 101, 310, 399
HaeIII GGCC 2 cut(s) 309, 531
HapII CCGG 3 cut(s) 216, 382, 590
HgaI GACGC 1 cut(s) 106
Hin1II CATG 2 cut(s) 616, 767
HindIII AAGCTT 2 cut(s) 116, 330
HinfI GANTC 2 cut(s) 473, 651
HpaII CCGG 3 cut(s) 216, 382, 590
Hpy166II GTNNAC 1 cut(s) 195
Hpy188III TCNNGA 2 cut(s) 269, 316
Hpy8I GTNNAC 1 cut(s) 195
HpyAV CCTTC 4 cut(s) 220, 313, 383, 803
HpyCH4III ACNGT 5 cut(s) 536, 547, 744, 759, 838
HpyCH4IV ACGT 1 cut(s) 78
HpyCH4V TGCA 4 cut(s) 103, 371, 710, 824
HpyF10VI GCNNNNNNNGC 5 cut(s) 109, 300, 309, 460, 537
HpyF3I CTNAG 3 cut(s) 420, 692, 849
HpySE526I ACGT 1 cut(s) 78
Hsp92II CATG 2 cut(s) 616, 767
KroI GCCGGC 1 cut(s) 589
KroNI GCCGGC 1 cut(s) 591
Ksp22I TGATCA 1 cut(s) 640
Kzo9I GATC 9 cut(s) 130, 235, 265, 423, 575, 640, 661, 799, 841
LmnI GCTCC 3 cut(s) 38, 82, 375
Lsp1109I GCAGC 3 cut(s) 72, 87, 410
LweI GCATC 2 cut(s) 228, 443
MabI ACCWGGT 1 cut(s) 188
MaeII ACGT 1 cut(s) 78
MaeIII GTNAC 1 cut(s) 608
MalI GATC 9 cut(s) 132, 237, 267, 425, 577, 642, 663, 801, 843
MboI GATC 9 cut(s) 130, 235, 265, 423, 575, 640, 661, 799, 841
MboII GAAGA 4 cut(s) 232, 268, 468, 646
MflI RGATCY 2 cut(s) 575, 841
MhlI GDGCHC 3 cut(s) 114, 380, 753
MlsI TGGCCA 1 cut(s) 531
MluCI AATT 7 cut(s) 10, 165, 244, 256, 603, 732, 804
MluNI TGGCCA 1 cut(s) 531
Mox20I TGGCCA 1 cut(s) 531
MroNI GCCGGC 1 cut(s) 589
MscI TGGCCA 1 cut(s) 531
Msp20I TGGCCA 1 cut(s) 531
MspI CCGG 3 cut(s) 216, 382, 590
MspR9I CCNGG 3 cut(s) 190, 382, 383
MvaI CCWGG 1 cut(s) 190
MvnI CGCG 1 cut(s) 150
MwoI GCNNNNNNNGC 5 cut(s) 109, 300, 309, 460, 537
NaeI GCCGGC 1 cut(s) 591
NciI CCSGG 2 cut(s) 382, 383
NdeII GATC 9 cut(s) 130, 235, 265, 423, 575, 640, 661, 799, 841
NgoMIV GCCGGC 1 cut(s) 589
NlaIII CATG 2 cut(s) 616, 767
NlaIV GGNNCC 3 cut(s) 230, 308, 843
PdiI GCCGGC 1 cut(s) 591
PfeI GAWTC 2 cut(s) 473, 651
PkrI GCNGC 4 cut(s) 87, 102, 311, 400
Psp6I CCWGG 1 cut(s) 188
PspGI CCWGG 1 cut(s) 188
PspN4I GGNNCC 3 cut(s) 230, 308, 843
PspPI GGNCC 2 cut(s) 192, 307
PstI CTGCAG 2 cut(s) 105, 373
PstNI CAGNNNCTG 1 cut(s) 716
PsuI RGATCY 2 cut(s) 575, 841
RsaI GTAC 1 cut(s) 355
RsaNI GTAC 1 cut(s) 354
SatI GCNGC 4 cut(s) 86, 101, 310, 399
Sau3AI GATC 9 cut(s) 130, 235, 265, 423, 575, 640, 661, 799, 841
Sau96I GGNCC 2 cut(s) 192, 307
SbfI CCTGCAGG 1 cut(s) 373
ScaI AGTACT 1 cut(s) 355
ScrFI CCNGG 3 cut(s) 190, 382, 383
SdaI CCTGCAGG 1 cut(s) 373
SduI GDGCHC 3 cut(s) 114, 380, 753
SexAI ACCWGGT 1 cut(s) 188
SfaNI GCATC 2 cut(s) 228, 443
SfcI CTRYAG 2 cut(s) 101, 369
SinI GGWCC 1 cut(s) 192
SmaI CCCGGG 1 cut(s) 383
Sse8387I CCTGCAGG 1 cut(s) 373
Sse9I AATT 7 cut(s) 10, 165, 244, 256, 603, 732, 804
SsiI CCGC 5 cut(s) 57, 63, 150, 301, 310
SspI AATATT 1 cut(s) 568
StyD4I CCNGG 3 cut(s) 188, 380, 381
TaaI ACNGT 5 cut(s) 536, 547, 744, 759, 838
TaiI ACGT 1 cut(s) 81
TaqI TCGA 4 cut(s) 129, 234, 349, 802
TasI AATT 7 cut(s) 10, 165, 244, 256, 603, 732, 804
TatI WGTACW 1 cut(s) 353
TauI GCSGC 1 cut(s) 312
TfiI GAWTC 2 cut(s) 473, 651
TscAI CASTG 2 cut(s) 747, 843
TseI GCWGC 3 cut(s) 85, 100, 398
TspDTI ATGAA 6 cut(s) 402, 436, 444, 511, 615, 780
TspMI CCCGGG 1 cut(s) 381
TspRI CASTG 2 cut(s) 747, 843
VpaK11BI GGWCC 1 cut(s) 192
XapI RAATTY 2 cut(s) 10, 165
XmaI CCCGGG 1 cut(s) 381
ZrmI AGTACT 1 cut(s) 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.