Prupe.6G000600_v2.0.a1

Transcription factor Pur-alpha

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0011498
Physical Location & Seq
Reverse (-)
139726 .. 146917
7192 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G000600.1

Sequence Viewer

Length: 921 bp
ATGGAAGGGAATTCGGGTGGCGTAGGAGGAGGAGGAGCAGTAGCAGGAGTAGGAGCAGGAGGAGCAACGACAGTAGGAGGTGGAGCTGGAGGCGGAGGTAATGACGTGGAGCTTCTGTGTAAGACGCTGCAGGTTGAGCACAAGCTCTTCTACTTCGATCTCAAAGAGAACCCTCGCGGCCGCTATCTCAAAATTTCCGAGAAGACGTCAGCCACCAGGTCCACCATCATCGTTCCCTTCTCCGGTATCTCCTGGTTCCTCGATCTCTTCAATTACTATGTCAATTCAGACGATCAGGATGTCTTCAGCAAGGAATTGCAGCTAGACACCAAGGTCTTCTACTTTGACATTGGCGAGAACCGCAGGGGCCGTTTCTTGAAGGTATCCGAAGCTTCTGTTAGTAGAAATCGCAGTACTATCATTGTTCCTGCAGGAAGCGCCCGGGATGAAGGGTGGGCAGCATTTAGAAACATTTTGGCAGAGATCAATGAAGCATCCAGACTTTTTATACTGCCCAATCAGCAGCAAAGTTCTGAACCTTCAGAGCGTCTTGTTGGGCTTTCAGATGATGTAGGCGCTGGCTTCATATCTGGCCACAGTAGTCAAACTGCTCCAACTTCTGAACTGAATGTTGACAGATCTGCAGAGTTGCCTGCACAGGATGAAATTGGTAACATGGGGGTATCTAAAGTGATCAGAGCTGATCAAAAAAGGTTCTTCTTTGATCTTGGGAGTAATAACAGGGGCCATTTCCTAAGAATATCCGAGGTTGCAGGTTCTGATCGCTCCTCCATAATTCTCCCGCTGTCAGGGCTCAAGCAGTTCCATGAAATAGTAGGTCACTTTGTGGAGATAACCAAAGACCGAATTGAAGGAATGACAGGTGCAAATGTTCGGACTGTGGATTCCCCCCAGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0010035 GO:0010038 GO:0042221 GO:0044424 GO:0044464 GO:0046686 GO:0050896 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PurA

Protein Analysis

307

Amino Acids

33.08

Weight (kDa)

5.65

Isoelectric Point (pI)

45.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011498)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G32080 AT2G32080
fragaria_vesca FvH4_3g46070 FvH4_3g46070
malus_domestica MD03G1000100.v1.1 MD11G1000500.v1.1
prunus_persica Prupe.6G000600_v2.0.a1 Prupe.6G000600_v2.0.a1
pyrus_communis pycom03g00040 pycom11g00080
rosa_chinensis RchiOBHm_Chr5g0084131
rosa_laevigata RLG00000037085
rosa_multiflora Rmu_sc0035629.1_g000001
rosa_roxburghii Rroxscaffold_1G00000510
rosa_rugosa Rorug05G0489400
rosa_samantha Rh5AG542000 Rh5BG567800 Rh5CG589500 Rh5DG575900
rosa_wichuraiana Rw5G050420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 332
AatII GACGTC 1 cut(s) 209
Acc36I ACCTGC 2 cut(s) 121, 764
AccII CGCG 1 cut(s) 177
AciI CCGC 5 cut(s) 93, 177, 181, 361, 803
AcoI YGGCCR 2 cut(s) 178, 592
AcsI RAATTY 2 cut(s) 10, 192
AcuI CTGAAG 2 cut(s) 289, 525
AcyI GRCGYC 1 cut(s) 206
AdeI CACNNNGTG 1 cut(s) 847
AfaI GTAC 1 cut(s) 415
AfiI CCNNNNNNNGG 3 cut(s) 242, 809, 915
AgsI TTSAA 3 cut(s) 271, 379, 872
AjiI CACGTC 1 cut(s) 106
AjnI CCWGG 2 cut(s) 215, 251
AluBI AGCT 6 cut(s) 86, 112, 145, 322, 392, 701
AluI AGCT 6 cut(s) 86, 112, 145, 322, 392, 701
Alw21I GWGCWC 1 cut(s) 141
AlwNI CAGNNNCTG 1 cut(s) 779
Ama87I CYCGRG 1 cut(s) 441
AoxI GGCC 4 cut(s) 178, 367, 592, 745
ApeKI GCWGC 4 cut(s) 127, 319, 458, 523
ApoI RAATTY 2 cut(s) 10, 192
AspLEI GCGC 2 cut(s) 440, 578
AspS9I GGNCC 3 cut(s) 219, 367, 745
AsuC2I CCSGG 2 cut(s) 442, 443
AvaI CYCGRG 1 cut(s) 441
AvaII GGWCC 1 cut(s) 219
BalI TGGCCA 1 cut(s) 594
BanII GRGCYC 1 cut(s) 816
BbsI GAAGAC 3 cut(s) 209, 295, 328
Bbv12I GWGCWC 1 cut(s) 141
BbvI GCAGC 4 cut(s) 114, 331, 470, 535
BccI CCATC 1 cut(s) 233
BceAI ACGGC 1 cut(s) 354
BciT130I CCWGG 2 cut(s) 217, 253
BciVI GTATCC 1 cut(s) 394
BclI TGATCA 2 cut(s) 693, 703
BcnI CCSGG 2 cut(s) 442, 443
BfaI CTAG 1 cut(s) 323
BfmI CTRYAG 3 cut(s) 128, 429, 642
BfoI RGCGCY 2 cut(s) 441, 579
BfuAI ACCTGC 2 cut(s) 121, 764
BfuI GTATCC 1 cut(s) 394
BglII AGATCT 1 cut(s) 638
BisI GCNGC 6 cut(s) 128, 178, 181, 320, 459, 524
BlsI GCNGC 6 cut(s) 129, 179, 182, 321, 460, 525
BmcAI AGTACT 1 cut(s) 415
Bme1390I CCNGG 4 cut(s) 217, 253, 442, 443
Bme18I GGWCC 1 cut(s) 219
BmeT110I CYCGRG 1 cut(s) 441
BmgBI CACGTC 1 cut(s) 106
BmgT120I GGNCC 3 cut(s) 219, 367, 745
BmiI GGNNCC 3 cut(s) 257, 368, 746
BmrFI CCNGG 4 cut(s) 217, 253, 442, 443
BmsI GCATC 1 cut(s) 503
BpiI GAAGAC 3 cut(s) 209, 295, 328
BpmI CTGGAG 1 cut(s) 108
BpuEI CTTGAG 1 cut(s) 800
BpuMI CCSGG 2 cut(s) 442, 443
BsaHI GRCGYC 1 cut(s) 206
BsaJI CCNNGG 3 cut(s) 330, 441, 765
BsaWI WCCGGW 1 cut(s) 242
BsaXI ACNNNNNCTCC 4 cut(s) 24, 54, 101, 131
Bsc4I CCNNNNNNNGG 3 cut(s) 242, 809, 915
BseBI CCWGG 2 cut(s) 217, 253
BseDI CCNNGG 3 cut(s) 330, 441, 765
BseGI GGATG 4 cut(s) 304, 451, 494, 667
BseLI CCNNNNNNNGG 3 cut(s) 242, 809, 915
BseRI GAGGAG 5 cut(s) 42, 45, 48, 75, 778
BseX3I CGGCCG 1 cut(s) 178
BseXI GCAGC 4 cut(s) 114, 331, 470, 535
BsgI GTGCAG 1 cut(s) 639
Bsh1236I CGCG 1 cut(s) 177
Bsh1285I CGRYCG 1 cut(s) 181
BshFI GGCC 4 cut(s) 180, 369, 594, 747
BsiEI CGRYCG 1 cut(s) 181
BsiHKAI GWGCWC 1 cut(s) 141
BsiHKCI CYCGRG 1 cut(s) 441
BsiSI CCGG 2 cut(s) 243, 442
BslI CCNNNNNNNGG 3 cut(s) 242, 809, 915
BsnI GGCC 4 cut(s) 180, 369, 594, 747
BsoBI CYCGRG 1 cut(s) 441
Bsp1286I GDGCHC 2 cut(s) 141, 816
Bsp143I GATC 9 cut(s) 157, 262, 292, 483, 638, 693, 703, 724, 781
BspACI CCGC 5 cut(s) 93, 177, 181, 361, 803
BspANI GGCC 4 cut(s) 180, 369, 594, 747
BspFNI CGCG 1 cut(s) 177
BspLI GGNNCC 3 cut(s) 257, 368, 746
BspMAI CTGCAG 3 cut(s) 132, 433, 646
BspMI ACCTGC 2 cut(s) 121, 764
BspQI GCTCTTC 1 cut(s) 152
BssECI CCNNGG 3 cut(s) 330, 441, 765
BssMI GATC 9 cut(s) 157, 262, 292, 483, 638, 693, 703, 724, 781
BssNI GRCGYC 1 cut(s) 206
BssT1I CCWWGG 1 cut(s) 330
Bst2UI CCWGG 2 cut(s) 217, 253
Bst4CI ACNGT 3 cut(s) 73, 599, 901
Bst6I CTCTTC 2 cut(s) 152, 272
BstACI GRCGYC 1 cut(s) 206
BstC8I GCNNGC 2 cut(s) 580, 654
BstDEI CTNAG 1 cut(s) 755
BstF5I GGATG 4 cut(s) 304, 451, 494, 667
BstFNI CGCG 1 cut(s) 177
BstH2I RGCGCY 2 cut(s) 441, 579
BstHHI GCGC 2 cut(s) 440, 578
BstKTI GATC 9 cut(s) 160, 265, 295, 486, 641, 696, 706, 727, 784
BstMBI GATC 9 cut(s) 157, 262, 292, 483, 638, 693, 703, 724, 781
BstMCI CGRYCG 1 cut(s) 181
BstMWI GCNNNNNNNGC 6 cut(s) 62, 136, 360, 437, 520, 811
BstNI CCWGG 2 cut(s) 217, 253
BstSCI CCNGG 4 cut(s) 215, 251, 440, 441
BstSFI CTRYAG 3 cut(s) 128, 429, 642
BstUI CGCG 1 cut(s) 177
BstV1I GCAGC 4 cut(s) 114, 331, 470, 535
BstV2I GAAGAC 3 cut(s) 209, 295, 328
BstX2I RGATCY 1 cut(s) 638
BstYI RGATCY 1 cut(s) 638
BstZI CGGCCG 1 cut(s) 178
BsuI GTATCC 1 cut(s) 394
BsuRI GGCC 4 cut(s) 180, 369, 594, 747
BtrI CACGTC 1 cut(s) 106
BtsCI GGATG 4 cut(s) 304, 451, 494, 667
BveI ACCTGC 2 cut(s) 121, 764
Cac8I GCNNGC 2 cut(s) 580, 654
CaiI CAGNNNCTG 1 cut(s) 779
CciNI GCGGCCGC 1 cut(s) 178
CfoI GCGC 2 cut(s) 440, 578
Cfr13I GGNCC 3 cut(s) 219, 367, 745
Cfr9I CCCGGG 1 cut(s) 441
CseI GACGC 2 cut(s) 133, 536
CsiI ACCWGGT 1 cut(s) 215
Csp6I GTAC 1 cut(s) 414
CviAII CATG 2 cut(s) 676, 827
CviQI GTAC 1 cut(s) 414
DdeI CTNAG 1 cut(s) 755
DpnI GATC 9 cut(s) 159, 264, 294, 485, 640, 695, 705, 726, 783
DpnII GATC 9 cut(s) 157, 262, 292, 483, 638, 693, 703, 724, 781
DraIII CACNNNGTG 1 cut(s) 847
DrdI GACNNNNNNGTC 1 cut(s) 332
DseDI GACNNNNNNGTC 1 cut(s) 332
EaeI YGGCCR 2 cut(s) 178, 592
EagI CGGCCG 1 cut(s) 178
Eam1104I CTCTTC 2 cut(s) 152, 272
EarI CTCTTC 2 cut(s) 152, 272
EciI GGCGGA 1 cut(s) 108
EclXI CGGCCG 1 cut(s) 178
Eco130I CCWWGG 1 cut(s) 330
Eco24I GRGCYC 1 cut(s) 816
Eco47I GGWCC 1 cut(s) 219
Eco52I CGGCCG 1 cut(s) 178
Eco57I CTGAAG 2 cut(s) 289, 525
Eco88I CYCGRG 1 cut(s) 441
EcoRI GAATTC 1 cut(s) 10
EcoRII CCWGG 2 cut(s) 215, 251
EcoT14I CCWWGG 1 cut(s) 330
EcoT38I GRGCYC 1 cut(s) 816
ErhI CCWWGG 1 cut(s) 330
FaeI CATG 2 cut(s) 679, 830
FaiI YATR 6 cut(s) 279, 509, 587, 677, 794, 828
FatI CATG 2 cut(s) 675, 826
FauI CCCGC 1 cut(s) 810
FbaI TGATCA 2 cut(s) 693, 703
Fnu4HI GCNGC 6 cut(s) 128, 178, 181, 320, 459, 524
FokI GGATG 4 cut(s) 311, 458, 481, 674
FriOI GRGCYC 1 cut(s) 816
Fsp4HI GCNGC 6 cut(s) 128, 178, 181, 320, 459, 524
FspBI CTAG 1 cut(s) 323
GlaI GCGC 2 cut(s) 439, 577
GluI GCNGC 6 cut(s) 128, 178, 181, 320, 459, 524
GsuI CTGGAG 1 cut(s) 108
HaeII RGCGCY 2 cut(s) 441, 579
HaeIII GGCC 4 cut(s) 180, 369, 594, 747
HapII CCGG 2 cut(s) 243, 442
HgaI GACGC 2 cut(s) 133, 536
HhaI GCGC 2 cut(s) 440, 578
Hin1I GRCGYC 1 cut(s) 206
Hin1II CATG 2 cut(s) 679, 830
Hin6I GCGC 2 cut(s) 438, 576
HinP1I GCGC 2 cut(s) 438, 576
HincII GTYRAC 1 cut(s) 634
HindII GTYRAC 1 cut(s) 634
HindIII AAGCTT 1 cut(s) 390
HinfI GANTC 1 cut(s) 905
HpaII CCGG 2 cut(s) 243, 442
Hpy166II GTNNAC 2 cut(s) 222, 634
Hpy188III TCNNGA 3 cut(s) 296, 376, 498
Hpy8I GTNNAC 2 cut(s) 222, 634
HpyAV CCTTC 5 cut(s) 247, 373, 443, 549, 866
HpyCH4III ACNGT 3 cut(s) 73, 599, 901
HpyCH4IV ACGT 2 cut(s) 105, 206
HpyCH4V TGCA 7 cut(s) 130, 319, 431, 644, 656, 773, 887
HpyF10VI GCNNNNNNNGC 6 cut(s) 62, 136, 360, 437, 520, 811
HpyF3I CTNAG 1 cut(s) 755
HpySE526I ACGT 2 cut(s) 105, 206
Hsp92I GRCGYC 1 cut(s) 206
Hsp92II CATG 2 cut(s) 679, 830
HspAI GCGC 2 cut(s) 438, 576
Ksp22I TGATCA 2 cut(s) 693, 703
Kzo9I GATC 9 cut(s) 157, 262, 292, 483, 638, 693, 703, 724, 781
LguI GCTCTTC 1 cut(s) 152
LmnI GCTCC 7 cut(s) 35, 53, 62, 83, 109, 616, 791
Lsp1109I GCAGC 4 cut(s) 114, 331, 470, 535
LweI GCATC 1 cut(s) 503
MabI ACCWGGT 1 cut(s) 215
MaeI CTAG 1 cut(s) 323
MaeII ACGT 2 cut(s) 105, 206
MaeIII GTNAC 2 cut(s) 671, 839
MalI GATC 9 cut(s) 159, 264, 294, 485, 640, 695, 705, 726, 783
MboI GATC 9 cut(s) 157, 262, 292, 483, 638, 693, 703, 724, 781
MboII GAAGA 6 cut(s) 139, 214, 259, 295, 328, 709
MflI RGATCY 1 cut(s) 638
MhlI GDGCHC 2 cut(s) 141, 816
MlsI TGGCCA 1 cut(s) 594
MluCI AATT 8 cut(s) 10, 192, 271, 283, 314, 666, 795, 867
MluNI TGGCCA 1 cut(s) 594
MmeI TCCRAC 1 cut(s) 638
Mox20I TGGCCA 1 cut(s) 594
MscI TGGCCA 1 cut(s) 594
Msp20I TGGCCA 1 cut(s) 594
MspA1I CMGCKG 1 cut(s) 805
MspI CCGG 2 cut(s) 243, 442
MspR9I CCNGG 4 cut(s) 217, 253, 442, 443
MvaI CCWGG 2 cut(s) 217, 253
MvnI CGCG 1 cut(s) 177
MwoI GCNNNNNNNGC 6 cut(s) 62, 136, 360, 437, 520, 811
NciI CCSGG 2 cut(s) 442, 443
NdeII GATC 9 cut(s) 157, 262, 292, 483, 638, 693, 703, 724, 781
NlaIII CATG 2 cut(s) 679, 830
NlaIV GGNNCC 3 cut(s) 257, 368, 746
NmuCI GTSAC 1 cut(s) 839
NotI GCGGCCGC 1 cut(s) 178
PciSI GCTCTTC 1 cut(s) 152
PfeI GAWTC 1 cut(s) 905
PkrI GCNGC 6 cut(s) 129, 179, 182, 321, 460, 525
Psp6I CCWGG 2 cut(s) 215, 251
PspGI CCWGG 2 cut(s) 215, 251
PspN4I GGNNCC 3 cut(s) 257, 368, 746
PspPI GGNCC 3 cut(s) 219, 367, 745
PstI CTGCAG 3 cut(s) 132, 433, 646
PstNI CAGNNNCTG 1 cut(s) 779
PsuI RGATCY 1 cut(s) 638
RsaI GTAC 1 cut(s) 415
RsaNI GTAC 1 cut(s) 414
SapI GCTCTTC 1 cut(s) 152
SatI GCNGC 6 cut(s) 128, 178, 181, 320, 459, 524
Sau3AI GATC 9 cut(s) 157, 262, 292, 483, 638, 693, 703, 724, 781
Sau96I GGNCC 3 cut(s) 219, 367, 745
SbfI CCTGCAGG 1 cut(s) 433
ScaI AGTACT 1 cut(s) 415
ScrFI CCNGG 4 cut(s) 217, 253, 442, 443
SdaI CCTGCAGG 1 cut(s) 433
SduI GDGCHC 2 cut(s) 141, 816
SexAI ACCWGGT 1 cut(s) 215
SfaNI GCATC 1 cut(s) 503
SfcI CTRYAG 3 cut(s) 128, 429, 642
SinI GGWCC 1 cut(s) 219
SmaI CCCGGG 1 cut(s) 443
SmlI CTYRAG 1 cut(s) 815
SmoI CTYRAG 1 cut(s) 815
Sse8387I CCTGCAGG 1 cut(s) 433
Sse9I AATT 8 cut(s) 10, 192, 271, 283, 314, 666, 795, 867
SsiI CCGC 5 cut(s) 93, 177, 181, 361, 803
SspMI CTAG 1 cut(s) 323
StyD4I CCNGG 4 cut(s) 215, 251, 440, 441
StyI CCWWGG 1 cut(s) 330
TaaI ACNGT 3 cut(s) 73, 599, 901
TaiI ACGT 2 cut(s) 108, 209
TaqI TCGA 2 cut(s) 156, 261
TaqII GACCGA 1 cut(s) 879
TasI AATT 8 cut(s) 10, 192, 271, 283, 314, 666, 795, 867
TatI WGTACW 1 cut(s) 413
TauI GCSGC 2 cut(s) 180, 183
TfiI GAWTC 1 cut(s) 905
TseFI GTSAC 1 cut(s) 839
TseI GCWGC 4 cut(s) 127, 319, 458, 523
Tsp45I GTSAC 1 cut(s) 839
TspDTI ATGAA 5 cut(s) 462, 504, 574, 678, 843
TspMI CCCGGG 1 cut(s) 441
VpaK11BI GGWCC 1 cut(s) 219
XapI RAATTY 2 cut(s) 10, 192
XmaI CCCGGG 1 cut(s) 441
XspI CTAG 1 cut(s) 323
ZraI GACGTC 1 cut(s) 207
ZrmI AGTACT 1 cut(s) 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.