Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0003769

Physical Location & Seq

Genomic Coordinates Reverse (-)

3164 .. 19260

Gene Structure 16097 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g00010.t11

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3048 bp

ATGGCGCTCTCGGCGTCTGACCTACCGGCCATGTTCTCGTTGCTGACCAACTCATTGAGCAGGGATGACAGTGTCCGGAAACCGGCAGAGGCGGCGCTCTCTCAGTCGGAAGCGAGGCCTGGTTTCTGCTCTTGTCTCATGGAAGTCATAACAGCCAAGGATTTGGCACCTCATGTAGATGTTCGCTTGATGGCTTCGGTGTATTTCAAAAACAGTATTAATCGTTACTGGAGGCACCGCCGTGATTCCTCGGGAATTAGCCACGAGGAGAAACTATATCTCAGACAGAAACTCTTATCACACTTCCGAGAAGAGAACAATCAGATAGCGCAAATGTTGGCTGTGCTTGTTTCCAAAATTGCTCGTATAGATTACCCGAAAGAATGGCCTGAGCTCTTTTCTGATTTAGCACAGAAGCTTCAATCAGCAGATATTCTTTCTTCCCACAGAATTTTTTTGACCCTCTTTCGAACCTTGAAGGAGTTGTCCACTAAGCGTCTTATCTCAGACCAAAAGAACTTTGCAGAGATATCAGCCCGATTCTTTGATTATAGCTGGCACCTTTGGCAGACGGATGTGCAAACGTTGTTGCATGGTTTTTCTACATTTTCTCAAAGCTACAACTCAAGTACATTGGAGCAGCATCACGATGATCTTTATCTAACGTGTGAGCGATGGCTGTTGTGCCTAAAGATAATACGCCAATTAATAATTTCAGGGTTTCCAAGTGATGCAAAATGTGTACAGGAGGTCCGACCAGTCATGGAGGTCTCGCCCATGCTCCTGAATGCCATTCAGTCATTTCTCCCATACTATTCATCTTTTCAGAAAGGACATCCTAAATTTTTGGACTTCCTAAAGAGGGCTTGTACTAAACTGATGAAGGTGTTAATTGCACTTCAGGGCAGGCATCCCTATTCATTTAGTGATAAATGCGTCCTTCCGGTTGTACTGGATTTCTGTTTACAGAAGATAACACATCCTGATCCAGATGTATTATCCTTTGAGCAGTTTCTGATTCAATGTATGGTAATGATCAAATCTGTATTAGAATGTAAAGAGTACAAGCCAAGTCTCACTGGTAGGGTGATGGATGAAAATGGGGTTACCCTGGAGCAAATAAAGAAAAATATATCTGGTGCTGTCAGTGGCATCCTGACTTCCCTTATGACAAGTGAACGCATTATAGTCTTGTGTAATATACTGATAAGAAGGTATTTTGTTCTAACACCAAGTGATTTGGAAGAGTGGTACCAGAATCCTGAATCTTTTCATCATGAGCAGGACATGGTTCAGTGGACAGAAAAATTAAGGCCATGTGCTGAAGCTCTATACATTGTTCTTTTTGAAAACCACAGCCAGCTCCTAGGCCCCGTTGTGGTTTCCATCCTTCAAGAGGCAATGAATGGCTGCCCAACTTCAGTGACCGAAATCACTCCAGGGTTGCTTCTTAAAGATGCTGCTTATGGTGCTGCTGCATATGTTTACTACGAACTCTCAAATTACCTGAGCTTTAAAGATTGGTTTAATGGTGCATTATCCCTTGAACTCTCAAATGATCATCCAAATATGCGTATCATCCATCGGAAAGTTGCACTAATTTTGGGACAATGGGTTTCTGAGATTAAAGAGGACACGAAGAGGCCAGTTTACTGTGCTTTAATTCGCTTACTACAGGACAAAGACCTGTCTGTCAGGCTGGCAGCCTGTAGGTCTCTGTGTTCACATATTGAAGATGCTAGCTTTTCCGAAGGAGAATTCGTCGATCTTCTTCCTATATGTTGGGACTCAAGTTTTAGGTTGATTGAGGAGGTTCAGGAGTTTGACTCGAAGGTTCAGGTTTTGAACTTGATTTCTGTTCTCATTGGACACGTGAGTGAAGTTATTCCGTTCGCAGACAAGCTTGTTCTATTTTTTCAGAAGGTTTGGGAGGAATCTTCTGGTGAATGCCTTCTGCAGATTCAACTTCTCATTGCATTGAAGAACTTTGTGGTCGCACTTGGATACCAATCACCGCTCTGCTACAACATATTGCTGCCTGTTCTGCAAAAGGGAATTGATATAAATAGCCCTGATGAACTCAATCTTCTAGAGGATAGCATGATGTTATGGGAAGCAACACTTTCTCAAGCCCCCTCAATGGTGCCTCAACTGCTAGCATACTTCGCGTGCCTAGTTGAGATTCTGGAAAGAAGTTTTGATCACTTGCAGGTTGCTGTCACTATAATTGAAGATTACATCATCTTAGGCGGATCGGAATTTCTGAGTATGCATGCATCAAGTGTTGCCAACATACTAGATCTGGTTGTTGGAAATGTCAATGATAGAGGACTTCTTTCAACTCTTCCTGTTATTGATATTCTAATACAGGTACCTATCAAACTTTGTTTCCCTACAGAAGTACCACAGTTGATCAGCAGTTCATTACAAAAATTAATTGTTATATGTATGACTGGAGCTGATGACCGAGATCCTTCTAAGGCCACTGTTAAAGCATCTTCTGCTGCCATATTGGCAAGAATATTGGTTATGAATACCAATTACCTAGCACACTTGACATCCGAGCCATCGCTTTTGTTACTCCTTCAAAAGTCGGGTGTCCCAATTGAGGAAAATATACTTCTTTGTCTCGTCGACATATGGCTTGACAAGATAGATAATGTATCATCTGTCCAAAGGAAGACTTATGGCTTAGCTCTTTCTATAATGTTGACACTAAGACTTCCTCAAGTGCTCGATAAACTTGATCAGATTCTAAGTGTGTGTACGACTGTAATTTTGGGTGTGAATGATGACTTAGTAGAGGAGTCCAGTGGTGATAGTATAAGCTCCAGTGGGTCTCTTAGTAAGGACAGCATCCCGAGTAAAGAAATGCGAAGAAGACAGGTCAAGTTTTCAGACCCTATAAACCAAATGTCTCTAGAGGATTCAGTAAGGGAAAACCTTCAGACTTGTGCTGCTCTTCATGGAGAATCTTTTAGTAAGGCCATCGGTAACATGCATCCCTCAGCCCTTACACAGTTGAAGCAGGCATTAAAGATGGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001650 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005730 GO:0005737 GO:0005829 GO:0006810 GO:0008104 GO:0008150 GO:0008565 GO:0012505 GO:0015031 GO:0015833 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0033036 GO:0042886 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044452 GO:0044464 GO:0045184 GO:0051179 GO:0051234 GO:0070013 GO:0071702 GO:0071705

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBN_N Xpo1

Protein Analysis

1016

Amino Acids

114.44

Weight (kDa)

5.54

Isoelectric Point (pI)

50.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_IPO11	PF25758	544 - 896	1.5e-71	Importin-11-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0003769)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08960 AT3G08960 AT3G08960
fragaria_vesca	FvH4_4g00010 FvH4_4g00010 FvH4_4g00010 FvH4_4g00010 FvH4_4g00010 FvH4_4g00010 FvH4_4g00010 FvH4_4g00010 FvH4_4g00010 FvH4_4g00010 FvH4_4g00010 FvH4_4g00010
malus_domestica	MD04G1000200.v1.1 MD04G1000400.v1.1
prunus_persica	Prupe.1G000100_v2.0.a1 Prupe.1G000100_v2.0.a1 Prupe.1G000300_v2.0.a1 Prupe.1G000300_v2.0.a1
pyrus_communis	pycom04g00040 pycom04g00060 pycom04g00090
rosa_laevigata	RLG00000010280
rosa_multiflora	Rmu_sc0006822.1_g000022 Rmu_sc0020186.1_g000001
rosa_roxburghii	Rroxscaffold_5G00332670
rosa_rugosa	Rorug03G0296500
rosa_samantha	Rh4AG000300 Rh4BG000300 Rh4CG000100 Rh4DG000500
rosa_wichuraiana	Rw4G000860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1691
Acc36I	ACCTGC	1 cut(s)	2200
Acc65I	GGTACC	2 cut(s)	1251, 2371
AccB1I	GGYRCC	6 cut(s)	166, 234, 558, 1251, 2143, 2371
AccBSI	CCGCTC	1 cut(s)	2017
AccI	GTMKAC	1 cut(s)	2634
AccII	CGCG	1 cut(s)	2168
AccIII	TCCGGA	1 cut(s)	75
AciI	CCGC	4 cut(s)	92, 238, 2015, 2250
AclI	AACGTT	1 cut(s)	584
AclWI	GGATC	3 cut(s)	980, 2260, 2465
AcoI	YGGCCR	1 cut(s)	27
AcsI	RAATTY	4 cut(s)	450, 842, 1757, 2258
AcuI	CTGAAG	4 cut(s)	884, 1344, 1404, 2930
AcvI	CACGTG	1 cut(s)	1873
AcyI	GRCGYC	1 cut(s)	14
AdeI	CACNNNGTG	1 cut(s)	1235
AfaI	GTAC	9 cut(s)	631, 744, 871, 951, 1064, 1253, 2373, 2403, 2767
AfiI	CCNNNNNNNGG	6 cut(s)	82, 862, 1378, 1396, 2140, 2608
AflIII	ACRYGT	2 cut(s)	665, 1870
AjnI	CCWGG	3 cut(s)	118, 1110, 1438
AleI	CACNNNNGTG	2 cut(s)	240, 1875
Alw21I	GWGCWC	2 cut(s)	396, 2736
Alw26I	GTCTC	7 cut(s)	140, 775, 1079, 1719, 2633, 2844, 2922
AlwI	GGATC	3 cut(s)	980, 2260, 2465
AlwNI	CAGNNNCTG	1 cut(s)	1015
Ama87I	CYCGRG	2 cut(s)	250, 2860
Aor13HI	TCCGGA	1 cut(s)	75
AoxI	GGCC	8 cut(s)	27, 116, 386, 1313, 1369, 1643, 2481, 2985
ApeKI	GCWGC	9 cut(s)	640, 1410, 1460, 1472, 1475, 1703, 2035, 2504, 2957
ApoI	RAATTY	4 cut(s)	450, 842, 1757, 2258
ArsI	GACNNNNNNTTYG	2 cut(s)	2761, 2793
AseI	ATTAAT	3 cut(s)	219, 707, 2435
Asp700I	GAANNNNTTC	4 cut(s)	1269, 1884, 1950, 2943
Asp718I	GGTACC	2 cut(s)	1251, 2371
AspA2I	CCTAGG	1 cut(s)	1366
AspLEI	GCGC	3 cut(s)	7, 97, 331
AspS9I	GGNCC	2 cut(s)	751, 1370
AsuHPI	GGTGA	4 cut(s)	1099, 1955, 2004, 2828
AsuII	TTCGAA	1 cut(s)	469
AsuNHI	GCTAGC	2 cut(s)	1739, 2155
AvaI	CYCGRG	2 cut(s)	250, 2860
AvaII	GGWCC	1 cut(s)	751
AvrII	CCTAGG	1 cut(s)	1366
BaeI	ACNNNNGTAYC	2 cut(s)	2385, 2418
BanI	GGYRCC	6 cut(s)	166, 234, 558, 1251, 2143, 2371
BanII	GRGCYC	1 cut(s)	396
BauI	CACGAG	1 cut(s)	263
BbrPI	CACGTG	1 cut(s)	1873
BbsI	GAAGAC	2 cut(s)	2687, 2887
Bbv12I	GWGCWC	2 cut(s)	396, 2736
BbvCI	CCTCAGC	1 cut(s)	3007
BbvI	GCAGC	9 cut(s)	652, 1397, 1447, 1459, 1462, 1715, 2022, 2491, 2944
BccI	CCATC	8 cut(s)	184, 669, 1084, 1394, 1590, 2575, 2996, 3034
BceAI	ACGGC	1 cut(s)	225
BciT130I	CCWGG	3 cut(s)	120, 1112, 1440
BciVI	GTATCC	1 cut(s)	1997
BclI	TGATCA	5 cut(s)	1035, 1558, 2200, 2412, 2746
BcoDI	GTCTC	7 cut(s)	140, 775, 1079, 1719, 2633, 2844, 2922
BfaI	CTAG	8 cut(s)	1367, 1740, 2090, 2156, 2174, 2297, 2546, 2921
BfmI	CTRYAG	4 cut(s)	1673, 1708, 1955, 2394
BfoI	RGCGCY	2 cut(s)	8, 98
BfuAI	ACCTGC	1 cut(s)	2200
BfuI	GTATCC	1 cut(s)	1997
BglI	GCCNNNNNGGC	1 cut(s)	2513
BglII	AGATCT	1 cut(s)	2299
BlnI	CCTAGG	1 cut(s)	1366
BlpI	GCTNAGC	1 cut(s)	2692
Bme1390I	CCNGG	3 cut(s)	120, 1112, 1440
Bme18I	GGWCC	1 cut(s)	751
BmeT110I	CYCGRG	2 cut(s)	250, 2860
BmgT120I	GGNCC	2 cut(s)	751, 1370
BmiI	GGNNCC	7 cut(s)	168, 236, 560, 1253, 1372, 2145, 2373
BmrFI	CCNGG	3 cut(s)	120, 1112, 1440
BmtI	GCTAGC	2 cut(s)	1743, 2159
BpiI	GAAGAC	2 cut(s)	2687, 2887
BplI	GAGNNNNNCTC	2 cut(s)	1811, 1843
BpmI	CTGGAG	5 cut(s)	250, 1133, 1422, 2475, 2815
Bpu10I	CCTNAGC	3 cut(s)	390, 1508, 3007
Bpu1102I	GCTNAGC	1 cut(s)	2692
Bpu14I	TTCGAA	1 cut(s)	469
BpuEI	CTTGAG	4 cut(s)	610, 1774, 2112, 2712
BsaAI	YACGTR	1 cut(s)	1873
BsaBI	GATNNNNATC	2 cut(s)	657, 2008
BsaHI	GRCGYC	1 cut(s)	14
BsaI	GGTCTC	3 cut(s)	775, 1719, 2844
BsaJI	CCNNGG	5 cut(s)	156, 249, 1110, 1366, 1439
BsaWI	WCCGGW	2 cut(s)	75, 943
BsaXI	ACNNNNNCTCC	2 cut(s)	1746, 1776
Bsc4I	CCNNNNNNNGG	6 cut(s)	82, 862, 1378, 1396, 2140, 2608
Bse118I	RCCGGY	2 cut(s)	25, 82
Bse1I	ACTGG	8 cut(s)	233, 758, 957, 1084, 1646, 2458, 2811, 2832
Bse3DI	GCAATG	2 cut(s)	1407, 1971
Bse8I	GATNNNNATC	2 cut(s)	657, 2008
BseAI	TCCGGA	1 cut(s)	75
BseBI	CCWGG	3 cut(s)	120, 1112, 1440
BseDI	CCNNGG	5 cut(s)	156, 249, 1110, 1366, 1439
BseJI	GATNNNNATC	2 cut(s)	657, 2008
BseLI	CCNNNNNNNGG	6 cut(s)	82, 862, 1378, 1396, 2140, 2608
BseMI	GCAATG	2 cut(s)	1407, 1971
BseMII	CTCAG	8 cut(s)	116, 295, 381, 519, 1499, 1611, 2255, 3021
BseNI	ACTGG	8 cut(s)	233, 758, 957, 1084, 1646, 2458, 2811, 2832
BseRI	GAGGAG	3 cut(s)	281, 1823, 2819
BseXI	GCAGC	9 cut(s)	652, 1397, 1447, 1459, 1462, 1715, 2022, 2491, 2944
Bsh1236I	CGCG	1 cut(s)	2168
BshFI	GGCC	8 cut(s)	29, 118, 388, 1315, 1371, 1645, 2483, 2987
BshNI	GGYRCC	6 cut(s)	166, 234, 558, 1251, 2143, 2371
BsiHKAI	GWGCWC	2 cut(s)	396, 2736
BsiHKCI	CYCGRG	2 cut(s)	250, 2860
BsiSI	CCGG	4 cut(s)	26, 76, 83, 944
BslFI	GGGAC	3 cut(s)	1620, 1799, 2585
BslI	CCNNNNNNNGG	6 cut(s)	82, 862, 1378, 1396, 2140, 2608
BsmAI	GTCTC	7 cut(s)	140, 775, 1079, 1719, 2633, 2844, 2922
BsmFI	GGGAC	3 cut(s)	1620, 1799, 2585
BsmI	GAATGC	2 cut(s)	793, 1952
BsnI	GGCC	8 cut(s)	29, 118, 388, 1315, 1371, 1645, 2483, 2987
Bso31I	GGTCTC	3 cut(s)	775, 1719, 2844
BsoBI	CYCGRG	2 cut(s)	250, 2860
Bsp119I	TTCGAA	1 cut(s)	469
Bsp1286I	GDGCHC	2 cut(s)	396, 2736
Bsp13I	TCCGGA	1 cut(s)	75
Bsp1407I	TGTACA	1 cut(s)	742
Bsp1720I	GCTNAGC	1 cut(s)	2692
BspACI	CCGC	4 cut(s)	92, 238, 2015, 2250
BspANI	GGCC	8 cut(s)	29, 118, 388, 1315, 1371, 1645, 2483, 2987
BspCNI	CTCAG	8 cut(s)	115, 294, 382, 518, 1500, 1612, 2256, 3020
BspEI	TCCGGA	1 cut(s)	75
BspFNI	CGCG	1 cut(s)	2168
BspHI	TCATGA	1 cut(s)	1276
BspLI	GGNNCC	7 cut(s)	168, 236, 560, 1253, 1372, 2145, 2373
BspMAI	CTGCAG	1 cut(s)	1959
BspMI	ACCTGC	1 cut(s)	2200
BspOI	GCTAGC	2 cut(s)	1743, 2159
BspPI	GGATC	3 cut(s)	980, 2260, 2465
BspQI	GCTCTTC	1 cut(s)	2967
BspT104I	TTCGAA	1 cut(s)	469
BspT107I	GGYRCC	6 cut(s)	166, 234, 558, 1251, 2143, 2371
BspTNI	GGTCTC	3 cut(s)	775, 1719, 2844
BsrBI	CCGCTC	1 cut(s)	2017
BsrDI	GCAATG	2 cut(s)	1407, 1971
BsrFI	RCCGGY	2 cut(s)	25, 82
BsrGI	TGTACA	1 cut(s)	742
BsrI	ACTGG	8 cut(s)	233, 758, 957, 1084, 1646, 2458, 2811, 2832
BssAI	RCCGGY	2 cut(s)	25, 82
BssECI	CCNNGG	5 cut(s)	156, 249, 1110, 1366, 1439
BssNI	GRCGYC	1 cut(s)	14
BssSI	CACGAG	1 cut(s)	263
BssT1I	CCWWGG	2 cut(s)	156, 1366
Bst2BI	CACGAG	1 cut(s)	263
Bst2UI	CCWGG	3 cut(s)	120, 1112, 1440
Bst4CI	ACNGT	7 cut(s)	71, 215, 1655, 2409, 2488, 2773, 3021
Bst6I	CTCTTC	5 cut(s)	306, 1239, 1634, 2349, 2967
BstACI	GRCGYC	1 cut(s)	14
BstAPI	GCANNNNNTGC	1 cut(s)	2501
BstAUI	TGTACA	1 cut(s)	742
BstBAI	YACGTR	1 cut(s)	1873
BstBI	TTCGAA	1 cut(s)	469
BstC8I	GCNNGC	9 cut(s)	557, 908, 1361, 1701, 1741, 2157, 2170, 2274, 3030
BstEII	GGTNACC	1 cut(s)	1105
BstENI	CCTNNNNNAGG	1 cut(s)	1394
BstFNI	CGCG	1 cut(s)	2168
BstH2I	RGCGCY	2 cut(s)	8, 98
BstHHI	GCGC	3 cut(s)	7, 97, 331
BstMAI	GTCTC	7 cut(s)	140, 775, 1079, 1719, 2633, 2844, 2922
BstMWI	GCNNNNNNNGC	9 cut(s)	11, 92, 565, 1469, 2044, 2152, 2165, 2501, 2513
BstNI	CCWGG	3 cut(s)	120, 1112, 1440
BstNSI	RCATGY	2 cut(s)	2276, 3001
BstPI	GGTNACC	1 cut(s)	1105
BstSCI	CCNGG	3 cut(s)	118, 1110, 1438
BstSFI	CTRYAG	4 cut(s)	1673, 1708, 1955, 2394
BstUI	CGCG	1 cut(s)	2168
BstV1I	GCAGC	9 cut(s)	652, 1397, 1447, 1459, 1462, 1715, 2022, 2491, 2944
BstV2I	GAAGAC	2 cut(s)	2687, 2887
BstX2I	RGATCY	2 cut(s)	2299, 2470
BstXI	CCANNNNNNTGG	1 cut(s)	163
BstYI	RGATCY	2 cut(s)	2299, 2470
BsuI	GTATCC	1 cut(s)	1997
BsuRI	GGCC	8 cut(s)	29, 118, 388, 1315, 1371, 1645, 2483, 2987
BtgZI	GCGATG	2 cut(s)	688, 2553
BtsIMutI	CAGTG	8 cut(s)	76, 1077, 1153, 1301, 1428, 2484, 2818, 2839
BveI	ACCTGC	1 cut(s)	2200
Cac8I	GCNNGC	9 cut(s)	557, 908, 1361, 1701, 1741, 2157, 2170, 2274, 3030
CaiI	CAGNNNCTG	1 cut(s)	1015
CciI	TCATGA	1 cut(s)	1276
CfoI	GCGC	3 cut(s)	7, 97, 331
Cfr10I	RCCGGY	2 cut(s)	25, 82
Cfr13I	GGNCC	2 cut(s)	751, 1370
CseI	GACGC	3 cut(s)	3, 485, 925
Csp6I	GTAC	9 cut(s)	630, 743, 870, 950, 1063, 1252, 2372, 2402, 2766
CviQI	GTAC	9 cut(s)	630, 743, 870, 950, 1063, 1252, 2372, 2402, 2766
DraI	TTTAAA	1 cut(s)	1516
DraIII	CACNNNGTG	1 cut(s)	1235
DrdI	GACNNNNNNGTC	1 cut(s)	1691
DseDI	GACNNNNNNGTC	1 cut(s)	1691
EaeI	YGGCCR	1 cut(s)	27
Eam1104I	CTCTTC	5 cut(s)	306, 1239, 1634, 2349, 2967
EarI	CTCTTC	5 cut(s)	306, 1239, 1634, 2349, 2967
EciI	GGCGGA	1 cut(s)	2265
Ecl136II	GAGCTC	1 cut(s)	394
Eco130I	CCWWGG	2 cut(s)	156, 1366
Eco147I	AGGCCT	1 cut(s)	118
Eco24I	GRGCYC	1 cut(s)	396
Eco31I	GGTCTC	3 cut(s)	775, 1719, 2844
Eco32I	GATATC	1 cut(s)	531
Eco47I	GGWCC	1 cut(s)	751
Eco53kI	GAGCTC	1 cut(s)	394
Eco57I	CTGAAG	4 cut(s)	884, 1344, 1404, 2930
Eco72I	CACGTG	1 cut(s)	1873
Eco88I	CYCGRG	2 cut(s)	250, 2860
Eco91I	GGTNACC	1 cut(s)	1105
EcoICRI	GAGCTC	1 cut(s)	394
EcoNI	CCTNNNNNAGG	1 cut(s)	1394
EcoO109I	RGGNCCY	1 cut(s)	1370
EcoO65I	GGTNACC	1 cut(s)	1105
EcoRI	GAATTC	1 cut(s)	1757
EcoRII	CCWGG	3 cut(s)	118, 1110, 1438
EcoRV	GATATC	1 cut(s)	531
EcoT14I	CCWWGG	2 cut(s)	156, 1366
EcoT22I	ATGCAT	3 cut(s)	2274, 2278, 3003
EcoT38I	GRGCYC	1 cut(s)	396
ErhI	CCWWGG	2 cut(s)	156, 1366
FalI	AAGNNNNNCTT	4 cut(s)	2106, 2138, 2668, 2700
FaqI	GGGAC	3 cut(s)	1620, 1799, 2585
FauNDI	CATATG	2 cut(s)	1480, 2639
FbaI	TGATCA	5 cut(s)	1035, 1558, 2200, 2412, 2746
FblI	GTMKAC	1 cut(s)	2634
FriOI	GRGCYC	1 cut(s)	396
FspBI	CTAG	8 cut(s)	1367, 1740, 2090, 2156, 2174, 2297, 2546, 2921
GlaI	GCGC	3 cut(s)	6, 96, 330
GsuI	CTGGAG	5 cut(s)	250, 1133, 1422, 2475, 2815
HaeII	RGCGCY	2 cut(s)	8, 98
HaeIII	GGCC	8 cut(s)	29, 118, 388, 1315, 1371, 1645, 2483, 2987
HapII	CCGG	4 cut(s)	26, 76, 83, 944
HgaI	GACGC	3 cut(s)	3, 485, 925
HhaI	GCGC	3 cut(s)	7, 97, 331
Hin1I	GRCGYC	1 cut(s)	14
Hin6I	GCGC	3 cut(s)	5, 95, 329
HinP1I	GCGC	3 cut(s)	5, 95, 329
HincII	GTYRAC	2 cut(s)	2635, 2712
HindII	GTYRAC	2 cut(s)	2635, 2712
HindIII	AAGCTT	2 cut(s)	416, 1901
HpaII	CCGG	4 cut(s)	26, 76, 83, 944
HphI	GGTGA	4 cut(s)	1099, 1955, 2004, 2828
Hpy99I	CGWCG	2 cut(s)	1766, 2636
HpyCH4III	ACNGT	7 cut(s)	71, 215, 1655, 2409, 2488, 2773, 3021
HpyCH4IV	ACGT	3 cut(s)	584, 665, 1872
HpyF10VI	GCNNNNNNNGC	9 cut(s)	11, 92, 565, 1469, 2044, 2152, 2165, 2501, 2513
HpySE526I	ACGT	3 cut(s)	584, 665, 1872
Hsp92I	GRCGYC	1 cut(s)	14
HspAI	GCGC	3 cut(s)	5, 95, 329
Kpn2I	TCCGGA	1 cut(s)	75
KpnI	GGTACC	2 cut(s)	1255, 2375
Ksp22I	TGATCA	5 cut(s)	1035, 1558, 2200, 2412, 2746
LguI	GCTCTTC	1 cut(s)	2967
LmnI	GCTCC	6 cut(s)	637, 786, 1114, 1368, 2456, 2834
Lsp1109I	GCAGC	9 cut(s)	652, 1397, 1447, 1459, 1462, 1715, 2022, 2491, 2944
MaeI	CTAG	8 cut(s)	1367, 1740, 2090, 2156, 2174, 2297, 2546, 2921
MaeII	ACGT	3 cut(s)	584, 665, 1872
MaeIII	GTNAC	6 cut(s)	224, 1105, 1423, 2218, 2577, 2993
MbiI	CCGCTC	1 cut(s)	2017
MfeI	CAATTG	1 cut(s)	2604
MflI	RGATCY	2 cut(s)	2299, 2470
MhlI	GDGCHC	2 cut(s)	396, 2736
MlyI	GAGTC	3 cut(s)	1781, 1820, 2816
MmeI	TCCRAC	3 cut(s)	87, 778, 2290
Mph1103I	ATGCAT	3 cut(s)	2274, 2278, 3003
MroI	TCCGGA	1 cut(s)	75
MroXI	GAANNNNTTC	4 cut(s)	1269, 1884, 1950, 2943
MslI	CAYNNNNRTG	4 cut(s)	177, 240, 648, 1875
MspI	CCGG	4 cut(s)	26, 76, 83, 944
MspR9I	CCNGG	3 cut(s)	120, 1112, 1440
MunI	CAATTG	1 cut(s)	2604
Mva1269I	GAATGC	2 cut(s)	793, 1952
MvaI	CCWGG	3 cut(s)	120, 1112, 1440
MvnI	CGCG	1 cut(s)	2168
MwoI	GCNNNNNNNGC	9 cut(s)	11, 92, 565, 1469, 2044, 2152, 2165, 2501, 2513
NdeI	CATATG	2 cut(s)	1480, 2639
NheI	GCTAGC	2 cut(s)	1739, 2155
NlaIV	GGNNCC	7 cut(s)	168, 236, 560, 1253, 1372, 2145, 2373
NmuCI	GTSAC	2 cut(s)	1423, 2218
NsiI	ATGCAT	3 cut(s)	2274, 2278, 3003
NspI	RCATGY	2 cut(s)	2276, 3001
NspV	TTCGAA	1 cut(s)	469
OliI	CACNNNNGTG	2 cut(s)	240, 1875
PaeI	GCATGC	1 cut(s)	2276
PagI	TCATGA	1 cut(s)	1276
PceI	AGGCCT	1 cut(s)	118
PciSI	GCTCTTC	1 cut(s)	2967
PctI	GAATGC	2 cut(s)	793, 1952
PdmI	GAANNNNTTC	4 cut(s)	1269, 1884, 1950, 2943
PflFI	GACNNNGTC	1 cut(s)	71
PleI	GAGTC	3 cut(s)	1781, 1820, 2815
PmaCI	CACGTG	1 cut(s)	1873
PmlI	CACGTG	1 cut(s)	1873
PpsI	GAGTC	3 cut(s)	1781, 1820, 2815
Ppu21I	YACGTR	1 cut(s)	1873
PshBI	ATTAAT	3 cut(s)	219, 707, 2435
Psp124BI	GAGCTC	1 cut(s)	396
Psp1406I	AACGTT	1 cut(s)	584
Psp6I	CCWGG	3 cut(s)	118, 1110, 1438
PspCI	CACGTG	1 cut(s)	1873
PspEI	GGTNACC	1 cut(s)	1105
PspGI	CCWGG	3 cut(s)	118, 1110, 1438
PspN4I	GGNNCC	7 cut(s)	168, 236, 560, 1253, 1372, 2145, 2373
PspPI	GGNCC	2 cut(s)	751, 1370
PstI	CTGCAG	1 cut(s)	1959
PstNI	CAGNNNCTG	1 cut(s)	1015
PsuI	RGATCY	2 cut(s)	2299, 2470
PsyI	GACNNNGTC	1 cut(s)	71
RsaI	GTAC	9 cut(s)	631, 744, 871, 951, 1064, 1253, 2373, 2403, 2767
RsaNI	GTAC	9 cut(s)	630, 743, 870, 950, 1063, 1252, 2372, 2402, 2766
RseI	CAYNNNNRTG	4 cut(s)	177, 240, 648, 1875
SacI	GAGCTC	1 cut(s)	396
SalI	GTCGAC	1 cut(s)	2633
SapI	GCTCTTC	1 cut(s)	2967
Sau96I	GGNCC	2 cut(s)	751, 1370
SchI	GAGTC	3 cut(s)	1781, 1820, 2816
ScrFI	CCNGG	3 cut(s)	120, 1112, 1440
SduI	GDGCHC	2 cut(s)	396, 2736
SfcI	CTRYAG	4 cut(s)	1673, 1708, 1955, 2394
SfuI	TTCGAA	1 cut(s)	469
SinI	GGWCC	1 cut(s)	751
SmiMI	CAYNNNNRTG	4 cut(s)	177, 240, 648, 1875
SmlI	CTYRAG	4 cut(s)	625, 1789, 2127, 2727
SmoI	CTYRAG	4 cut(s)	625, 1789, 2127, 2727
SphI	GCATGC	1 cut(s)	2276
SseBI	AGGCCT	1 cut(s)	118
SsiI	CCGC	4 cut(s)	92, 238, 2015, 2250
SspI	AATATT	1 cut(s)	2523
SspMI	CTAG	8 cut(s)	1367, 1740, 2090, 2156, 2174, 2297, 2546, 2921
SstI	GAGCTC	1 cut(s)	396
StuI	AGGCCT	1 cut(s)	118
StyD4I	CCNGG	3 cut(s)	118, 1110, 1438
StyI	CCWWGG	2 cut(s)	156, 1366
TaaI	ACNGT	7 cut(s)	71, 215, 1655, 2409, 2488, 2773, 3021
TaiI	ACGT	3 cut(s)	587, 668, 1875
TaqI	TCGA	5 cut(s)	469, 1764, 1829, 2634, 2736
TaqII	GACCGA	2 cut(s)	1442, 2481
TatI	WGTACW	5 cut(s)	629, 742, 869, 949, 1062
TauI	GCSGC	1 cut(s)	95
TscAI	CASTG	8 cut(s)	76, 1084, 1153, 1301, 1428, 2491, 2818, 2839
TseFI	GTSAC	2 cut(s)	1423, 2218
TseI	GCWGC	9 cut(s)	640, 1410, 1460, 1472, 1475, 1703, 2035, 2504, 2957
Tsp45I	GTSAC	2 cut(s)	1423, 2218
TspGWI	ACGGA	2 cut(s)	587, 1878
TspRI	CASTG	8 cut(s)	76, 1084, 1153, 1301, 1428, 2491, 2818, 2839
Tth111I	GACNNNGTC	1 cut(s)	71
VpaK11BI	GGWCC	1 cut(s)	751
VspI	ATTAAT	3 cut(s)	219, 707, 2435
XagI	CCTNNNNNAGG	1 cut(s)	1394
XapI	RAATTY	4 cut(s)	450, 842, 1757, 2258
XbaI	TCTAGA	2 cut(s)	2089, 2920
XceI	RCATGY	2 cut(s)	2276, 3001
XmaJI	CCTAGG	1 cut(s)	1366
XmiI	GTMKAC	1 cut(s)	2634
XmnI	GAANNNNTTC	4 cut(s)	1269, 1884, 1950, 2943
XspI	CTAG	8 cut(s)	1367, 1740, 2090, 2156, 2174, 2297, 2546, 2921
Zsp2I	ATGCAT	3 cut(s)	2274, 2278, 3003

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.