Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020186.1

Orthogroup ID

OG0003769

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 5219

Gene Structure 5219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020186.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

gttcaggttttgaatttgatatctgttctcattggacatgtgactgaagttattccgttcgcaaacaagcttgttctattttttcagaaggtttgggaggaatcttctggtgaatgccttctgcagattcaacttctcgttgcattgaagaactttgtggtcgcacttggttaccaatcacctctttgctacaacatattgctgcccgttctgcaaaagggaatcgatataaatagccctgatgaactcaatcttctagaggatagcatgctgttatgggaagccacactttctcaagccccttcaatggtgcctcaactactagcatacttcccttgtttagttgacattctggaaagaagttttgatcacctgcaggttgctgtcactataattgaagattacattatcttaggtggatcggaatttttgagtatgcatgcatcaagtgtggctaaaatactagatctggttgttgggaatgtcaatgataggggacttctgtcaactctccctgtcattgatattctaatacagtgtttccctacagaagtaccacagttgatcagcagtgcattacaaaaattaattgttatatgcataactggagctgatgaccgagatccttctaaggccactgttaaagcatcttcggctgccatcttggcaagaatattggttatgaataccaattacctagcacacttgacgtccgagccatcacttttgttgctccttcaaaagtcgggtgtcccaattgaagaaaatatacttctttctcttgttgacatatggcttgacaaggttagtaagctttcatctcactacaaggatacttctgaagattgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001650 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005730 GO:0005737 GO:0005829 GO:0006810 GO:0008104 GO:0008150 GO:0008565 GO:0012505 GO:0015031 GO:0015833 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0033036 GO:0042886 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044452 GO:0044464 GO:0045184 GO:0051179 GO:0051234 GO:0070013 GO:0071702 GO:0071705

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBN_N Xpo1

Protein Analysis

283

Amino Acids

31.1

Weight (kDa)

4.58

Isoelectric Point (pI)

56.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003769)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08960 AT3G08960 AT3G08960
fragaria_vesca	FvH4_4g00010 FvH4_4g00010 FvH4_4g00010 FvH4_4g00010 FvH4_4g00010 FvH4_4g00010 FvH4_4g00010 FvH4_4g00010 FvH4_4g00010 FvH4_4g00010 FvH4_4g00010 FvH4_4g00010
malus_domestica	MD04G1000200.v1.1 MD04G1000400.v1.1
prunus_persica	Prupe.1G000100_v2.0.a1 Prupe.1G000100_v2.0.a1 Prupe.1G000300_v2.0.a1 Prupe.1G000300_v2.0.a1
pyrus_communis	pycom04g00040 pycom04g00060 pycom04g00090
rosa_laevigata	RLG00000010280
rosa_multiflora	Rmu_sc0006822.1_g000022 Rmu_sc0020186.1_g000001
rosa_roxburghii	Rroxscaffold_5G00332670
rosa_rugosa	Rorug03G0296500
rosa_samantha	Rh4AG000300 Rh4BG000300 Rh4CG000100 Rh4DG000500
rosa_wichuraiana	Rw4G000860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	381
AatII	GACGTC	1 cut(s)	713
Acc36I	ACCTGC	2 cut(s)	367, 381
AccB1I	GGYRCC	1 cut(s)	310
AclWI	GGATC	2 cut(s)	427, 617
AcsI	RAATTY	2 cut(s)	13, 425
AcuI	CTGAAG	1 cut(s)	66
AcyI	GRCGYC	1 cut(s)	710
AfaI	GTAC	1 cut(s)	555
AfiI	CCNNNNNNNGG	1 cut(s)	307
AflIII	ACRYGT	1 cut(s)	37
AgsI	TTSAA	7 cut(s)	13, 131, 148, 306, 398, 740, 761
AluBI	AGCT	3 cut(s)	70, 611, 814
AluI	AGCT	3 cut(s)	70, 611, 814
AlwI	GGATC	2 cut(s)	427, 617
AoxI	GGCC	1 cut(s)	633
ApeKI	GCWGC	2 cut(s)	202, 656
ApoI	RAATTY	2 cut(s)	13, 425
AseI	ATTAAT	1 cut(s)	587
Asp700I	GAANNNNTTC	2 cut(s)	51, 117
AsuHPI	GGTGA	3 cut(s)	122, 171, 362
BaeI	ACNNNNGTAYC	2 cut(s)	537, 570
BanI	GGYRCC	1 cut(s)	310
BarI	GAAGNNNNNNTAC	2 cut(s)	753, 785
BbvI	GCAGC	2 cut(s)	189, 643
BccI	CCATC	2 cut(s)	668, 727
BciVI	GTATCC	1 cut(s)	826
BclI	TGATCA	2 cut(s)	367, 564
BfaI	CTAG	4 cut(s)	257, 323, 464, 698
BfmI	CTRYAG	3 cut(s)	122, 374, 546
BfuAI	ACCTGC	2 cut(s)	367, 381
BfuI	GTATCC	1 cut(s)	826
BglI	GCCNNNNNGGC	1 cut(s)	665
BglII	AGATCT	1 cut(s)	466
BisI	GCNGC	2 cut(s)	203, 657
BlsI	GCNGC	2 cut(s)	204, 658
BmiI	GGNNCC	1 cut(s)	312
BmsI	GCATC	2 cut(s)	452, 656
BoxI	GACNNNNGTC	1 cut(s)	502
BpmI	CTGGAG	1 cut(s)	627
BpuEI	CTTGAG	1 cut(s)	279
Bsa29I	ATCGAT	1 cut(s)	225
BsaHI	GRCGYC	1 cut(s)	710
Bsc4I	CCNNNNNNNGG	1 cut(s)	307
Bse1I	ACTGG	1 cut(s)	610
BseCI	ATCGAT	1 cut(s)	225
BseLI	CCNNNNNNNGG	1 cut(s)	307
BseNI	ACTGG	1 cut(s)	610
BseXI	GCAGC	2 cut(s)	189, 643
BshFI	GGCC	1 cut(s)	635
BshNI	GGYRCC	1 cut(s)	310
BshVI	ATCGAT	1 cut(s)	225
BslFI	GGGAC	2 cut(s)	510, 737
BslI	CCNNNNNNNGG	1 cut(s)	307
BsmFI	GGGAC	2 cut(s)	510, 737
BsmI	GAATGC	1 cut(s)	119
BsnI	GGCC	1 cut(s)	635
Bsp143I	GATC	5 cut(s)	367, 419, 466, 564, 622
BspANI	GGCC	1 cut(s)	635
BspDI	ATCGAT	1 cut(s)	225
BspLI	GGNNCC	1 cut(s)	312
BspMAI	CTGCAG	2 cut(s)	126, 378
BspMI	ACCTGC	2 cut(s)	367, 381
BspPI	GGATC	2 cut(s)	427, 617
BspT107I	GGYRCC	1 cut(s)	310
BsrI	ACTGG	1 cut(s)	610
BssMI	GATC	5 cut(s)	367, 419, 466, 564, 622
BssNI	GRCGYC	1 cut(s)	710
Bst4CI	ACNGT	3 cut(s)	537, 561, 640
BstACI	GRCGYC	1 cut(s)	710
BstC8I	GCNNGC	2 cut(s)	269, 441
BstDEI	CTNAG	2 cut(s)	412, 630
BstEII	GGTNACC	1 cut(s)	170
BstKTI	GATC	5 cut(s)	370, 422, 469, 567, 625
BstMBI	GATC	5 cut(s)	367, 419, 466, 564, 622
BstMWI	GCNNNNNNNGC	3 cut(s)	211, 653, 665
BstNSI	RCATGY	3 cut(s)	41, 271, 443
BstPAI	GACNNNNGTC	1 cut(s)	502
BstPI	GGTNACC	1 cut(s)	170
BstSFI	CTRYAG	3 cut(s)	122, 374, 546
BstV1I	GCAGC	2 cut(s)	189, 643
BstX2I	RGATCY	2 cut(s)	466, 622
BstYI	RGATCY	2 cut(s)	466, 622
Bsu15I	ATCGAT	1 cut(s)	225
BsuI	GTATCC	1 cut(s)	826
BsuRI	GGCC	1 cut(s)	635
BsuTUI	ATCGAT	1 cut(s)	225
BtsI	GCAGTG	1 cut(s)	577
BtsIMutI	CAGTG	3 cut(s)	542, 577, 636
BveI	ACCTGC	2 cut(s)	367, 381
Cac8I	GCNNGC	2 cut(s)	269, 441
ClaI	ATCGAT	1 cut(s)	225
Csp6I	GTAC	1 cut(s)	554
CviAII	CATG	3 cut(s)	38, 268, 440
CviQI	GTAC	1 cut(s)	554
DdeI	CTNAG	2 cut(s)	412, 630
DpnI	GATC	5 cut(s)	369, 421, 468, 566, 624
DpnII	GATC	5 cut(s)	367, 419, 466, 564, 622
Eco32I	GATATC	1 cut(s)	21
Eco57I	CTGAAG	1 cut(s)	66
Eco91I	GGTNACC	1 cut(s)	170
EcoO65I	GGTNACC	1 cut(s)	170
EcoRV	GATATC	1 cut(s)	21
EcoT22I	ATGCAT	3 cut(s)	441, 445, 602
FaeI	CATG	3 cut(s)	41, 271, 443
FalI	AAGNNNNNCTT	2 cut(s)	273, 305
FaqI	GGGAC	2 cut(s)	510, 737
FatI	CATG	3 cut(s)	37, 267, 439
FauNDI	CATATG	1 cut(s)	791
FbaI	TGATCA	2 cut(s)	367, 564
Fnu4HI	GCNGC	2 cut(s)	203, 657
Fsp4HI	GCNGC	2 cut(s)	203, 657
FspBI	CTAG	4 cut(s)	257, 323, 464, 698
GluI	GCNGC	2 cut(s)	203, 657
GsuI	CTGGAG	1 cut(s)	627
HaeIII	GGCC	1 cut(s)	635
Hin1I	GRCGYC	1 cut(s)	710
Hin1II	CATG	3 cut(s)	41, 271, 443
HincII	GTYRAC	3 cut(s)	346, 507, 787
HindII	GTYRAC	3 cut(s)	346, 507, 787
HindIII	AAGCTT	2 cut(s)	68, 812
HinfI	GANTC	3 cut(s)	101, 127, 222
HphI	GGTGA	3 cut(s)	122, 171, 362
Hpy166II	GTNNAC	3 cut(s)	346, 507, 787
Hpy188I	TCNGA	4 cut(s)	87, 424, 715, 841
Hpy188III	TCNNGA	2 cut(s)	257, 353
Hpy8I	GTNNAC	3 cut(s)	346, 507, 787
HpyAV	CCTTC	5 cut(s)	82, 128, 312, 636, 746
HpyCH4III	ACNGT	3 cut(s)	537, 561, 640
HpyCH4IV	ACGT	1 cut(s)	710
HpyCH4V	TGCA	8 cut(s)	124, 143, 214, 376, 439, 443, 575, 600
HpyF10VI	GCNNNNNNNGC	3 cut(s)	211, 653, 665
HpyF3I	CTNAG	2 cut(s)	412, 630
HpySE526I	ACGT	1 cut(s)	710
Hsp92I	GRCGYC	1 cut(s)	710
Hsp92II	CATG	3 cut(s)	41, 271, 443
Ksp22I	TGATCA	2 cut(s)	367, 564
Kzo9I	GATC	5 cut(s)	367, 419, 466, 564, 622
LmnI	GCTCC	2 cut(s)	608, 738
LpnPI	CCDG	8 cut(s)	93, 252, 338, 362, 386, 455, 528, 591
Lsp1109I	GCAGC	2 cut(s)	189, 643
LweI	GCATC	2 cut(s)	452, 656
MaeI	CTAG	4 cut(s)	257, 323, 464, 698
MaeII	ACGT	1 cut(s)	710
MaeIII	GTNAC	3 cut(s)	40, 170, 385
MalI	GATC	5 cut(s)	369, 421, 468, 566, 624
MboI	GATC	5 cut(s)	367, 419, 466, 564, 622
MboII	GAAGA	6 cut(s)	96, 160, 245, 410, 642, 773
MfeI	CAATTG	1 cut(s)	756
MflI	RGATCY	2 cut(s)	466, 622
MluCI	AATT	7 cut(s)	13, 393, 425, 584, 588, 691, 756
MnlI	CCTC	4 cut(s)	91, 192, 253, 324
Mph1103I	ATGCAT	3 cut(s)	441, 445, 602
MroXI	GAANNNNTTC	2 cut(s)	51, 117
MseI	TTAA	2 cut(s)	587, 642
MunI	CAATTG	1 cut(s)	756
Mva1269I	GAATGC	1 cut(s)	119
MwoI	GCNNNNNNNGC	3 cut(s)	211, 653, 665
NdeI	CATATG	1 cut(s)	791
NdeII	GATC	5 cut(s)	367, 419, 466, 564, 622
NlaIII	CATG	3 cut(s)	41, 271, 443
NlaIV	GGNNCC	1 cut(s)	312
NmuCI	GTSAC	2 cut(s)	40, 385
NsiI	ATGCAT	3 cut(s)	441, 445, 602
NspI	RCATGY	3 cut(s)	41, 271, 443
PaeI	GCATGC	2 cut(s)	271, 443
PaqCI	CACCTGC	1 cut(s)	381
PciI	ACATGT	1 cut(s)	37
PctI	GAATGC	1 cut(s)	119
PdmI	GAANNNNTTC	2 cut(s)	51, 117
PfeI	GAWTC	3 cut(s)	101, 127, 222
PkrI	GCNGC	2 cut(s)	204, 658
PscI	ACATGT	1 cut(s)	37
PshAI	GACNNNNGTC	1 cut(s)	502
PshBI	ATTAAT	1 cut(s)	587
PspEI	GGTNACC	1 cut(s)	170
PspN4I	GGNNCC	1 cut(s)	312
PstI	CTGCAG	2 cut(s)	126, 378
PsuI	RGATCY	2 cut(s)	466, 622
RsaI	GTAC	1 cut(s)	555
RsaNI	GTAC	1 cut(s)	554
SaqAI	TTAA	2 cut(s)	587, 642
SatI	GCNGC	2 cut(s)	203, 657
Sau3AI	GATC	5 cut(s)	367, 419, 466, 564, 622
SbfI	CCTGCAGG	1 cut(s)	378
SdaI	CCTGCAGG	1 cut(s)	378
SfaNI	GCATC	2 cut(s)	452, 656
SfcI	CTRYAG	3 cut(s)	122, 374, 546
SmlI	CTYRAG	1 cut(s)	294
SmoI	CTYRAG	1 cut(s)	294
SphI	GCATGC	2 cut(s)	271, 443
Sse8387I	CCTGCAGG	1 cut(s)	378
Sse9I	AATT	7 cut(s)	13, 393, 425, 584, 588, 691, 756
SspI	AATATT	1 cut(s)	675
SspMI	CTAG	4 cut(s)	257, 323, 464, 698
TaaI	ACNGT	3 cut(s)	537, 561, 640
TaiI	ACGT	1 cut(s)	713
TaqI	TCGA	1 cut(s)	225
TaqII	GACCGA	1 cut(s)	633
TasI	AATT	7 cut(s)	13, 393, 425, 584, 588, 691, 756
TfiI	GAWTC	3 cut(s)	101, 127, 222
Tru1I	TTAA	2 cut(s)	587, 642
Tru9I	TTAA	2 cut(s)	587, 642
TscAI	CASTG	3 cut(s)	542, 577, 643
TseFI	GTSAC	2 cut(s)	40, 385
TseI	GCWGC	2 cut(s)	202, 656
Tsp45I	GTSAC	2 cut(s)	40, 385
TspDTI	ATGAA	3 cut(s)	258, 698, 807
TspGWI	ACGGA	1 cut(s)	45
TspRI	CASTG	3 cut(s)	542, 577, 643
VspI	ATTAAT	1 cut(s)	587
XapI	RAATTY	2 cut(s)	13, 425
XbaI	TCTAGA	1 cut(s)	256
XceI	RCATGY	3 cut(s)	41, 271, 443
XmnI	GAANNNNTTC	2 cut(s)	51, 117
XspI	CTAG	4 cut(s)	257, 323, 464, 698
ZraI	GACGTC	1 cut(s)	711
Zsp2I	ATGCAT	3 cut(s)	441, 445, 602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.