Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003769

Physical Location & Seq

Genomic Coordinates Forward (+)

58976 .. 70278

Gene Structure 11303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G000300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGAGCGAAGTTATGCCATTTGCAAACAAGCTAATTCTATTTTTTCAGAAGGTTTGGGAGGAATCTTCCGGTGAATGTCTTCTGCAGATTCAACTTCTTGTTGCTTTGAGAAACTTTGTGGTTGCACTTGGCTACCAGTCGCCAATTTGCTATGACATATTGCTGCCTATTCTGCAAAAGGGAATTGATATAGATAGCCCGGATGAACTCAATCTTCTAGAGGACAGCATGCTGTTATGGGAAGCCACACTTTCTCATGCTCCTTCAATGGTGCCTCAACTACTAGCATACTTCCCATGTGTAGTAAAAATCATGGAAAGAAGTTTCGATCACTTGCAGATTGCTGTCAGTATAACTGAGGATTACATTATCTTAGGCGGATCTGAATTTCTAAGTATACATGCTTCAAGTGTTGCTCAAATTCTAGATCTGGTTGTTGGAAATGTCAATGATAGAGGACTACTTTCAACTCTTCCTGTCATTGATATTCTAATACAGTGTTTCCCGTTAGAAGTGCCCCAGTTGATCAGCAGTACATTACAAAAATTAATTGTTATATGTTTGAGTGGAGGCGACGACCAAGATCCTTCTAAGACAGCTGTTAAAGCATCTTCAGCTGCCATCCTGGCAAGAATTTTGGTCATGAATACCAATTACCTAGCCCATTTGACATCAGAACCATCACTTCTGTTGCTCCTTCAGAGTTCGGGTATCCCAACTGAGGAAAATGTACTTCTTTGTCTTGTTAACATATGGCTTGACAAGGCAGACAATGTATCTTCCATCCAAAGGAAGACGTATGGCTTAGCTCTTTCTATAATTCTGACATTAAGACTTCCTCAAGTCCTCAACAAACTTGATCAGATCCTGAGTGTGTGTACAACTGTAATTTTGGGTGGCAATGATGACTTAACAGAGGAGTCAAGTGGTGATAATATAACCTCCAGCGGATCCCTTAGTAAGGGCACCATTCCAAGTAAAGAATTCAGAAGAAGACAGCTCAAGTTTTCAGACCCTATCAACCAAATGTCTCTAGACGCTTCAGTGAGGGAAAATCTTCAGACATGTGCTACCCTTCATGGAGAATCTTTTAATAAGGCCATTGGATGCATGCATCCCTCAGCATTTTCACAACTAAAGCAGGCATTAAAGATGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001650 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005730 GO:0005737 GO:0005829 GO:0006810 GO:0008104 GO:0008150 GO:0008565 GO:0012505 GO:0015031 GO:0015833 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0033036 GO:0042886 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044452 GO:0044464 GO:0045184 GO:0051179 GO:0051234 GO:0070013 GO:0071702 GO:0071705

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBN_N Xpo1

Protein Analysis

387

Amino Acids

42.28

Weight (kDa)

4.84

Isoelectric Point (pI)

64.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003769)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08960 AT3G08960 AT3G08960
fragaria_vesca	FvH4_4g00010 FvH4_4g00010 FvH4_4g00010 FvH4_4g00010 FvH4_4g00010 FvH4_4g00010 FvH4_4g00010 FvH4_4g00010 FvH4_4g00010 FvH4_4g00010 FvH4_4g00010 FvH4_4g00010
malus_domestica	MD04G1000200.v1.1 MD04G1000400.v1.1
prunus_persica	Prupe.1G000100_v2.0.a1 Prupe.1G000100_v2.0.a1 Prupe.1G000300_v2.0.a1 Prupe.1G000300_v2.0.a1
pyrus_communis	pycom04g00040 pycom04g00060 pycom04g00090
rosa_laevigata	RLG00000010280
rosa_multiflora	Rmu_sc0006822.1_g000022 Rmu_sc0020186.1_g000001
rosa_roxburghii	Rroxscaffold_5G00332670
rosa_rugosa	Rorug03G0296500
rosa_samantha	Rh4AG000300 Rh4BG000300 Rh4CG000100 Rh4DG000500
rosa_wichuraiana	Rw4G000860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	271, 965
AccI	GTMKAC	1 cut(s)	397
AciI	CCGC	2 cut(s)	378, 948
AclWI	GGATC	5 cut(s)	388, 578, 859, 945, 958
AcsI	RAATTY	4 cut(s)	386, 420, 633, 983
AcuI	CTGAAG	4 cut(s)	597, 683, 1026, 1043
AfaI	GTAC	3 cut(s)	535, 732, 880
AfiI	CCNNNNNNNGG	3 cut(s)	721, 789, 961
AflIII	ACRYGT	1 cut(s)	1064
AgsI	TTSAA	4 cut(s)	92, 267, 408, 468
AjnI	CCWGG	1 cut(s)	624
AluBI	AGCT	5 cut(s)	31, 599, 617, 809, 1000
AluI	AGCT	5 cut(s)	31, 599, 617, 809, 1000
Alw26I	GTCTC	1 cut(s)	1035
AlwI	GGATC	5 cut(s)	388, 578, 859, 945, 958
AlwNI	CAGNNNCTG	1 cut(s)	868
AoxI	GGCC	1 cut(s)	1098
ApeKI	GCWGC	2 cut(s)	163, 617
ApoI	RAATTY	4 cut(s)	386, 420, 633, 983
AseI	ATTAAT	1 cut(s)	548
Asp700I	GAANNNNTTC	2 cut(s)	78, 1056
AsuC2I	CCSGG	1 cut(s)	200
AsuHPI	GGTGA	2 cut(s)	83, 941
BaeGI	GKGCMC	2 cut(s)	519, 968
BamHI	GGATCC	1 cut(s)	950
BanI	GGYRCC	2 cut(s)	271, 965
BarI	GAAGNNNNNNTAC	2 cut(s)	388, 420
BbsI	GAAGAC	3 cut(s)	71, 800, 1000
BbvCI	CCTCAGC	1 cut(s)	1120
BbvI	GCAGC	2 cut(s)	150, 604
BccI	CCATC	4 cut(s)	629, 688, 791, 1147
BciT130I	CCWGG	1 cut(s)	626
BciVI	GTATCC	1 cut(s)	722
BclI	TGATCA	2 cut(s)	525, 859
BcnI	CCSGG	1 cut(s)	200
BcoDI	GTCTC	1 cut(s)	1035
BfaI	CTAG	5 cut(s)	218, 284, 425, 659, 1034
BfmI	CTRYAG	1 cut(s)	83
BfuI	GTATCC	1 cut(s)	722
BglI	GCCNNNNNGGC	1 cut(s)	626
BglII	AGATCT	1 cut(s)	427
BisI	GCNGC	2 cut(s)	164, 618
BlpI	GCTNAGC	1 cut(s)	805
BlsI	GCNGC	2 cut(s)	165, 619
Bme1390I	CCNGG	2 cut(s)	200, 626
BmiI	GGNNCC	3 cut(s)	273, 952, 967
BmrFI	CCNGG	2 cut(s)	200, 626
BmrI	ACTGGG	1 cut(s)	514
BmsI	GCATC	3 cut(s)	617, 1097, 1123
BmuI	ACTGGG	1 cut(s)	514
BpiI	GAAGAC	3 cut(s)	71, 800, 1000
BpmI	CTGGAG	1 cut(s)	928
Bpu10I	CCTNAGC	1 cut(s)	1120
Bpu1102I	GCTNAGC	1 cut(s)	805
BpuEI	CTTGAG	2 cut(s)	825, 986
BpuMI	CCSGG	1 cut(s)	200
BsaWI	WCCGGW	1 cut(s)	68
Bsc4I	CCNNNNNNNGG	3 cut(s)	721, 789, 961
Bse1I	ACTGG	2 cut(s)	136, 520
Bse3DI	GCAATG	1 cut(s)	907
BseBI	CCWGG	1 cut(s)	626
BseGI	GGATG	5 cut(s)	208, 621, 783, 1112, 1114
BseLI	CCNNNNNNNGG	3 cut(s)	721, 789, 961
BseMI	GCAATG	1 cut(s)	907
BseMII	CTCAG	4 cut(s)	348, 711, 860, 1134
BseNI	ACTGG	2 cut(s)	136, 520
BseRI	GAGGAG	1 cut(s)	932
BseSI	GKGCMC	2 cut(s)	519, 968
BseXI	GCAGC	2 cut(s)	150, 604
BshFI	GGCC	1 cut(s)	1100
BshNI	GGYRCC	2 cut(s)	271, 965
BsiSI	CCGG	2 cut(s)	69, 200
BslI	CCNNNNNNNGG	3 cut(s)	721, 789, 961
BsmAI	GTCTC	1 cut(s)	1035
BsnI	GGCC	1 cut(s)	1100
Bsp1286I	GDGCHC	2 cut(s)	519, 968
Bsp1407I	TGTACA	1 cut(s)	878
Bsp143I	GATC	8 cut(s)	328, 380, 427, 525, 583, 859, 864, 950
Bsp1720I	GCTNAGC	1 cut(s)	805
BspACI	CCGC	2 cut(s)	378, 948
BspANI	GGCC	1 cut(s)	1100
BspCNI	CTCAG	4 cut(s)	349, 712, 861, 1133
BspHI	TCATGA	1 cut(s)	642
BspLI	GGNNCC	3 cut(s)	273, 952, 967
BspMAI	CTGCAG	1 cut(s)	87
BspPI	GGATC	5 cut(s)	388, 578, 859, 945, 958
BspT107I	GGYRCC	2 cut(s)	271, 965
BsrDI	GCAATG	1 cut(s)	907
BsrGI	TGTACA	1 cut(s)	878
BsrI	ACTGG	2 cut(s)	136, 520
BssMI	GATC	8 cut(s)	328, 380, 427, 525, 583, 859, 864, 950
BssNAI	GTATAC	1 cut(s)	398
Bst1107I	GTATAC	1 cut(s)	398
Bst2UI	CCWGG	1 cut(s)	626
Bst4CI	ACNGT	2 cut(s)	498, 886
Bst6I	CTCTTC	1 cut(s)	477
BstAUI	TGTACA	1 cut(s)	878
BstC8I	GCNNGC	3 cut(s)	230, 1112, 1143
BstDEI	CTNAG	9 cut(s)	357, 373, 392, 591, 720, 805, 869, 956, 1120
BstENI	CCTNNNNNAGG	1 cut(s)	959
BstF5I	GGATG	5 cut(s)	208, 621, 783, 1112, 1114
BstKTI	GATC	8 cut(s)	331, 383, 430, 528, 586, 862, 867, 953
BstMAI	GTCTC	1 cut(s)	1035
BstMBI	GATC	8 cut(s)	328, 380, 427, 525, 583, 859, 864, 950
BstMWI	GCNNNNNNNGC	4 cut(s)	172, 605, 614, 626
BstNI	CCWGG	1 cut(s)	626
BstNSI	RCATGY	4 cut(s)	232, 404, 1068, 1114
BstSCI	CCNGG	2 cut(s)	198, 624
BstSFI	CTRYAG	1 cut(s)	83
BstSLI	GKGCMC	2 cut(s)	519, 968
BstV1I	GCAGC	2 cut(s)	150, 604
BstV2I	GAAGAC	3 cut(s)	71, 800, 1000
BstX2I	RGATCY	5 cut(s)	380, 427, 583, 864, 950
BstYI	RGATCY	5 cut(s)	380, 427, 583, 864, 950
BstZ17I	GTATAC	1 cut(s)	398
BsuI	GTATCC	1 cut(s)	722
BsuRI	GGCC	1 cut(s)	1100
BtsCI	GGATG	5 cut(s)	208, 621, 783, 1112, 1114
BtsIMutI	CAGTG	2 cut(s)	503, 1050
Cac8I	GCNNGC	3 cut(s)	230, 1112, 1143
CaiI	CAGNNNCTG	1 cut(s)	868
CciI	TCATGA	1 cut(s)	642
CseI	GACGC	1 cut(s)	1046
Csp6I	GTAC	3 cut(s)	534, 731, 879
CviAII	CATG	9 cut(s)	229, 257, 297, 313, 401, 643, 1065, 1079, 1111
CviQI	GTAC	3 cut(s)	534, 731, 879
DdeI	CTNAG	9 cut(s)	357, 373, 392, 591, 720, 805, 869, 956, 1120
DpnI	GATC	8 cut(s)	330, 382, 429, 527, 585, 861, 866, 952
DpnII	GATC	8 cut(s)	328, 380, 427, 525, 583, 859, 864, 950
Eam1104I	CTCTTC	1 cut(s)	477
EarI	CTCTTC	1 cut(s)	477
EciI	GGCGGA	1 cut(s)	393
Eco57I	CTGAAG	4 cut(s)	597, 683, 1026, 1043
EcoNI	CCTNNNNNAGG	1 cut(s)	959
EcoRI	GAATTC	1 cut(s)	983
EcoRII	CCWGG	1 cut(s)	624
EcoT22I	ATGCAT	2 cut(s)	1112, 1116
FaeI	CATG	9 cut(s)	232, 260, 300, 316, 404, 646, 1068, 1082, 1114
FalI	AAGNNNNNCTT	2 cut(s)	234, 266
FatI	CATG	9 cut(s)	228, 256, 296, 312, 400, 642, 1064, 1078, 1110
FauNDI	CATATG	1 cut(s)	752
FbaI	TGATCA	2 cut(s)	525, 859
FblI	GTMKAC	1 cut(s)	397
Fnu4HI	GCNGC	2 cut(s)	164, 618
FokI	GGATG	5 cut(s)	215, 608, 770, 1101, 1119
Fsp4HI	GCNGC	2 cut(s)	164, 618
FspBI	CTAG	5 cut(s)	218, 284, 425, 659, 1034
GluI	GCNGC	2 cut(s)	164, 618
GsuI	CTGGAG	1 cut(s)	928
HaeIII	GGCC	1 cut(s)	1100
HapII	CCGG	2 cut(s)	69, 200
HgaI	GACGC	1 cut(s)	1046
Hin1II	CATG	9 cut(s)	232, 260, 300, 316, 404, 646, 1068, 1082, 1114
HincII	GTYRAC	1 cut(s)	748
HindII	GTYRAC	1 cut(s)	748
HinfI	GANTC	4 cut(s)	62, 88, 920, 1085
HpaI	GTTAAC	1 cut(s)	748
HpaII	CCGG	2 cut(s)	69, 200
HphI	GGTGA	2 cut(s)	83, 941
Hpy166II	GTNNAC	3 cut(s)	398, 748, 879
Hpy188I	TCNGA	9 cut(s)	48, 385, 676, 702, 825, 864, 989, 1012, 1062
Hpy188III	TCNNGA	5 cut(s)	218, 425, 643, 868, 1034
Hpy8I	GTNNAC	3 cut(s)	398, 748, 879
Hpy99I	CGWCG	1 cut(s)	578
HpyAV	CCTTC	5 cut(s)	43, 273, 597, 707, 1085
HpyCH4III	ACNGT	2 cut(s)	498, 886
HpyCH4IV	ACGT	1 cut(s)	797
HpyCH4V	TGCA	7 cut(s)	23, 85, 125, 175, 337, 1110, 1114
HpyF10VI	GCNNNNNNNGC	4 cut(s)	172, 605, 614, 626
HpyF3I	CTNAG	9 cut(s)	357, 373, 392, 591, 720, 805, 869, 956, 1120
HpySE526I	ACGT	1 cut(s)	797
Hsp92II	CATG	9 cut(s)	232, 260, 300, 316, 404, 646, 1068, 1082, 1114
Ksp22I	TGATCA	2 cut(s)	525, 859
KspAI	GTTAAC	1 cut(s)	748
Kzo9I	GATC	8 cut(s)	328, 380, 427, 525, 583, 859, 864, 950
LmnI	GCTCC	2 cut(s)	265, 699
Lsp1109I	GCAGC	2 cut(s)	150, 604
LweI	GCATC	3 cut(s)	617, 1097, 1123
MaeI	CTAG	5 cut(s)	218, 284, 425, 659, 1034
MaeII	ACGT	1 cut(s)	797
MalI	GATC	8 cut(s)	330, 382, 429, 527, 585, 861, 866, 952
MboI	GATC	8 cut(s)	328, 380, 427, 525, 583, 859, 864, 950
MflI	RGATCY	5 cut(s)	380, 427, 583, 864, 950
MhlI	GDGCHC	2 cut(s)	519, 968
MlyI	GAGTC	1 cut(s)	929
MmeI	TCCRAC	1 cut(s)	418
Mph1103I	ATGCAT	2 cut(s)	1112, 1116
MroXI	GAANNNNTTC	2 cut(s)	78, 1056
MseI	TTAA	7 cut(s)	548, 603, 747, 830, 911, 1092, 1148
MspA1I	CMGCKG	3 cut(s)	599, 617, 948
MspI	CCGG	2 cut(s)	69, 200
MspR9I	CCNGG	2 cut(s)	200, 626
MvaI	CCWGG	1 cut(s)	626
MwoI	GCNNNNNNNGC	4 cut(s)	172, 605, 614, 626
NciI	CCSGG	1 cut(s)	200
NdeI	CATATG	1 cut(s)	752
NdeII	GATC	8 cut(s)	328, 380, 427, 525, 583, 859, 864, 950
NlaIII	CATG	9 cut(s)	232, 260, 300, 316, 404, 646, 1068, 1082, 1114
NlaIV	GGNNCC	3 cut(s)	273, 952, 967
NsiI	ATGCAT	2 cut(s)	1112, 1116
NspI	RCATGY	4 cut(s)	232, 404, 1068, 1114
PaeI	GCATGC	2 cut(s)	232, 1114
PagI	TCATGA	1 cut(s)	642
PciI	ACATGT	1 cut(s)	1064
PdmI	GAANNNNTTC	2 cut(s)	78, 1056
PfeI	GAWTC	3 cut(s)	62, 88, 1085
PkrI	GCNGC	2 cut(s)	165, 619
PleI	GAGTC	1 cut(s)	928
PpsI	GAGTC	1 cut(s)	928
PscI	ACATGT	1 cut(s)	1064
PshBI	ATTAAT	1 cut(s)	548
Psp6I	CCWGG	1 cut(s)	624
PspGI	CCWGG	1 cut(s)	624
PspN4I	GGNNCC	3 cut(s)	273, 952, 967
PstI	CTGCAG	1 cut(s)	87
PstNI	CAGNNNCTG	1 cut(s)	868
PsuI	RGATCY	5 cut(s)	380, 427, 583, 864, 950
PvuII	CAGCTG	2 cut(s)	599, 617
RsaI	GTAC	3 cut(s)	535, 732, 880
RsaNI	GTAC	3 cut(s)	534, 731, 879
SaqAI	TTAA	7 cut(s)	548, 603, 747, 830, 911, 1092, 1148
SatI	GCNGC	2 cut(s)	164, 618
Sau3AI	GATC	8 cut(s)	328, 380, 427, 525, 583, 859, 864, 950
SchI	GAGTC	1 cut(s)	929
ScrFI	CCNGG	2 cut(s)	200, 626
SduI	GDGCHC	2 cut(s)	519, 968
SetI	ASST	9 cut(s)	33, 54, 601, 619, 660, 800, 811, 944, 1002
SfaNI	GCATC	3 cut(s)	617, 1097, 1123
SfcI	CTRYAG	1 cut(s)	83
SmlI	CTYRAG	2 cut(s)	840, 1001
SmoI	CTYRAG	2 cut(s)	840, 1001
SphI	GCATGC	2 cut(s)	232, 1114
SsiI	CCGC	2 cut(s)	378, 948
SspMI	CTAG	5 cut(s)	218, 284, 425, 659, 1034
StyD4I	CCNGG	2 cut(s)	198, 624
TaaI	ACNGT	2 cut(s)	498, 886
TaiI	ACGT	1 cut(s)	800
TaqI	TCGA	1 cut(s)	327
TatI	WGTACW	3 cut(s)	533, 730, 878
TfiI	GAWTC	3 cut(s)	62, 88, 1085
Tru1I	TTAA	7 cut(s)	548, 603, 747, 830, 911, 1092, 1148
Tru9I	TTAA	7 cut(s)	548, 603, 747, 830, 911, 1092, 1148
TscAI	CASTG	2 cut(s)	503, 1050
TseI	GCWGC	2 cut(s)	163, 617
TspDTI	ATGAA	3 cut(s)	219, 659, 1067
TspRI	CASTG	2 cut(s)	503, 1050
VspI	ATTAAT	1 cut(s)	548
XagI	CCTNNNNNAGG	1 cut(s)	959
XapI	RAATTY	4 cut(s)	386, 420, 633, 983
XbaI	TCTAGA	3 cut(s)	217, 424, 1033
XceI	RCATGY	4 cut(s)	232, 404, 1068, 1114
XmiI	GTMKAC	1 cut(s)	397
XmnI	GAANNNNTTC	2 cut(s)	78, 1056
XspI	CTAG	5 cut(s)	218, 284, 425, 659, 1034
Zsp2I	ATGCAT	2 cut(s)	1112, 1116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.