Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0003769

Physical Location & Seq

Genomic Coordinates Forward (+)

26120 .. 26656

Gene Structure 537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g00060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGAGTGAAGTTATGACATTTGCAAACAAGCTGGTTCTATTTTTCCAGAAGGCTTGGGAGGAATCTTCCAGTGAATGCCTTCTGCAGATTCAACTTCTTGTTGCTTTGAGGAACTTTGTAGTTGCACTTGGCTATCAGTCACCCATTTGCTACGACATATTACTGCCCATTCTGCAAAAGGGAATTGATATAAATAGCCCTGATGAGCTCAATCTTCTTGAGGACAGCATGCTGGTTTGCCCTATTAAGTTTGTCTTATTATTTTACCAGCTGGCATCATCCTTTTATTTAATATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001650 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005730 GO:0005737 GO:0005829 GO:0006810 GO:0008104 GO:0008150 GO:0008565 GO:0012505 GO:0015031 GO:0015833 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0033036 GO:0042886 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044452 GO:0044464 GO:0045184 GO:0051179 GO:0051234 GO:0070013 GO:0071702 GO:0071705

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBN_N Xpo1

Protein Analysis

100

Amino Acids

11.31

Weight (kDa)

4.32

Isoelectric Point (pI)

76.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_IPO11	PF25758	31 - 77	2.2e-08	Importin-11-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003769)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08960 AT3G08960 AT3G08960
fragaria_vesca	FvH4_4g00010 FvH4_4g00010 FvH4_4g00010 FvH4_4g00010 FvH4_4g00010 FvH4_4g00010 FvH4_4g00010 FvH4_4g00010 FvH4_4g00010 FvH4_4g00010 FvH4_4g00010 FvH4_4g00010
malus_domestica	MD04G1000200.v1.1 MD04G1000400.v1.1
prunus_persica	Prupe.1G000100_v2.0.a1 Prupe.1G000100_v2.0.a1 Prupe.1G000300_v2.0.a1 Prupe.1G000300_v2.0.a1
pyrus_communis	pycom04g00040 pycom04g00060 pycom04g00090
rosa_laevigata	RLG00000010280
rosa_multiflora	Rmu_sc0006822.1_g000022 Rmu_sc0020186.1_g000001
rosa_roxburghii	Rroxscaffold_5G00332670
rosa_rugosa	Rorug03G0296500
rosa_samantha	Rh4AG000300 Rh4BG000300 Rh4CG000100 Rh4DG000500
rosa_wichuraiana	Rw4G000860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	92
AluBI	AGCT	3 cut(s)	31, 208, 271
AluI	AGCT	3 cut(s)	31, 208, 271
Alw21I	GWGCWC	1 cut(s)	210
Asp700I	GAANNNNTTC	1 cut(s)	78
AsuHPI	GGTGA	1 cut(s)	132
BanII	GRGCYC	1 cut(s)	210
Bbv12I	GWGCWC	1 cut(s)	210
BfmI	CTRYAG	1 cut(s)	83
BmsI	GCATC	1 cut(s)	284
BpuEI	CTTGAG	1 cut(s)	239
Bse1I	ACTGG	1 cut(s)	69
BseGI	GGATG	1 cut(s)	278
BseNI	ACTGG	1 cut(s)	69
BsiHKAI	GWGCWC	1 cut(s)	210
BsmI	GAATGC	1 cut(s)	80
Bsp1286I	GDGCHC	1 cut(s)	210
BspMAI	CTGCAG	1 cut(s)	87
BsrI	ACTGG	1 cut(s)	69
BstC8I	GCNNGC	2 cut(s)	230, 273
BstF5I	GGATG	1 cut(s)	278
BstMWI	GCNNNNNNNGC	1 cut(s)	172
BstNSI	RCATGY	1 cut(s)	232
BstSFI	CTRYAG	1 cut(s)	83
BtsCI	GGATG	1 cut(s)	278
BtsIMutI	CAGTG	1 cut(s)	76
Cac8I	GCNNGC	2 cut(s)	230, 273
CviAII	CATG	1 cut(s)	229
CviJI	RGCY	6 cut(s)	31, 53, 132, 198, 208, 271
CviKI_1	RGCY	6 cut(s)	31, 53, 132, 198, 208, 271
Ecl136II	GAGCTC	1 cut(s)	208
Eco24I	GRGCYC	1 cut(s)	210
Eco53kI	GAGCTC	1 cut(s)	208
EcoICRI	GAGCTC	1 cut(s)	208
EcoT38I	GRGCYC	1 cut(s)	210
FaeI	CATG	1 cut(s)	232
FaiI	YATR	5 cut(s)	14, 158, 191, 230, 295
FalI	AAGNNNNNCTT	2 cut(s)	239, 271
FatI	CATG	1 cut(s)	228
FokI	GGATG	1 cut(s)	265
FriOI	GRGCYC	1 cut(s)	210
Hin1II	CATG	1 cut(s)	232
HinfI	GANTC	2 cut(s)	62, 88
HphI	GGTGA	1 cut(s)	132
Hpy188III	TCNNGA	2 cut(s)	46, 218
HpyAV	CCTTC	2 cut(s)	43, 89
HpyCH4V	TGCA	4 cut(s)	23, 85, 125, 175
HpyF10VI	GCNNNNNNNGC	1 cut(s)	172
Hsp92II	CATG	1 cut(s)	232
LpnPI	CCDG	7 cut(s)	17, 59, 82, 213, 218, 257, 281
LweI	GCATC	1 cut(s)	284
MaeIII	GTNAC	1 cut(s)	138
MboII	GAAGA	2 cut(s)	57, 206
MhlI	GDGCHC	1 cut(s)	210
MluCI	AATT	1 cut(s)	183
MnlI	CCTC	3 cut(s)	52, 102, 214
MroXI	GAANNNNTTC	1 cut(s)	78
MseI	TTAA	2 cut(s)	246, 290
MspA1I	CMGCKG	1 cut(s)	271
Mva1269I	GAATGC	1 cut(s)	80
MwoI	GCNNNNNNNGC	1 cut(s)	172
NlaIII	CATG	1 cut(s)	232
NmuCI	GTSAC	1 cut(s)	138
NspI	RCATGY	1 cut(s)	232
PaeI	GCATGC	1 cut(s)	232
PctI	GAATGC	1 cut(s)	80
PdmI	GAANNNNTTC	1 cut(s)	78
PfeI	GAWTC	2 cut(s)	62, 88
Psp124BI	GAGCTC	1 cut(s)	210
PstI	CTGCAG	1 cut(s)	87
PvuII	CAGCTG	1 cut(s)	271
SacI	GAGCTC	1 cut(s)	210
SaqAI	TTAA	2 cut(s)	246, 290
SduI	GDGCHC	1 cut(s)	210
SetI	ASST	3 cut(s)	33, 210, 273
SfaNI	GCATC	1 cut(s)	284
SfcI	CTRYAG	1 cut(s)	83
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
SphI	GCATGC	1 cut(s)	232
Sse9I	AATT	1 cut(s)	183
SstI	GAGCTC	1 cut(s)	210
TasI	AATT	1 cut(s)	183
TfiI	GAWTC	2 cut(s)	62, 88
Tru1I	TTAA	2 cut(s)	246, 290
Tru9I	TTAA	2 cut(s)	246, 290
TscAI	CASTG	1 cut(s)	76
TseFI	GTSAC	1 cut(s)	138
Tsp45I	GTSAC	1 cut(s)	138
TspRI	CASTG	1 cut(s)	76
XceI	RCATGY	1 cut(s)	232
XmnI	GAANNNNTTC	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.