Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0003769

Physical Location & Seq

Genomic Coordinates Forward (+)

19479 .. 19967

Gene Structure 489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g00040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGTATTCTTCCTTTCAGAAAGGACATCCTAAATTTTGGGACTTTATAAAGAGGGCATGTACTAAGTTGATGAAGGTTTTAATTGCAATTCAGGGCAGACATCCTTACACATTTAGTGATAAATGTGTCCTTCCAACTGTAGTGGATTTCTGTTTAAAGAAGATAACAGATCCTGAACCAGATGTATTATTATTTGAGCAGTTTCTGATTCAGTGTATGATAATGATTAAGTGTGTCTTGGAATGTAAAGAGTACAAACCAAGTGTCACTGGTCGGGTGATGGATGAAAATGGGGTTACACTGGAGCAAATGAAGAAAAACATATCTTGTGCAGTTGGTGGCGTCTTGACTTCCCTTATGACAAGCGAACGAATAGTATTCTTGTGCAACATATTAGTAAGAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001650 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005730 GO:0005737 GO:0005829 GO:0006810 GO:0008104 GO:0008150 GO:0008565 GO:0012505 GO:0015031 GO:0015833 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0033036 GO:0042886 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044452 GO:0044464 GO:0045184 GO:0051179 GO:0051234 GO:0070013 GO:0071702 GO:0071705

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBN_N Xpo1

Protein Analysis

136

Amino Acids

15.52

Weight (kDa)

8.94

Isoelectric Point (pI)

39.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003769)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08960 AT3G08960 AT3G08960
fragaria_vesca	FvH4_4g00010 FvH4_4g00010 FvH4_4g00010 FvH4_4g00010 FvH4_4g00010 FvH4_4g00010 FvH4_4g00010 FvH4_4g00010 FvH4_4g00010 FvH4_4g00010 FvH4_4g00010 FvH4_4g00010
malus_domestica	MD04G1000200.v1.1 MD04G1000400.v1.1
prunus_persica	Prupe.1G000100_v2.0.a1 Prupe.1G000100_v2.0.a1 Prupe.1G000300_v2.0.a1 Prupe.1G000300_v2.0.a1
pyrus_communis	pycom04g00040 pycom04g00060 pycom04g00090
rosa_laevigata	RLG00000010280
rosa_multiflora	Rmu_sc0006822.1_g000022 Rmu_sc0020186.1_g000001
rosa_roxburghii	Rroxscaffold_5G00332670
rosa_rugosa	Rorug03G0296500
rosa_samantha	Rh4AG000300 Rh4BG000300 Rh4CG000100 Rh4DG000500
rosa_wichuraiana	Rw4G000860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	47
AclWI	GGATC	1 cut(s)	164
AcsI	RAATTY	1 cut(s)	32
AcyI	GRCGYC	1 cut(s)	342
AfaI	GTAC	2 cut(s)	61, 254
AlwI	GGATC	1 cut(s)	164
AlwNI	CAGNNNCTG	2 cut(s)	173, 205
ApoI	RAATTY	1 cut(s)	32
ArsI	GACNNNNNNTTYG	2 cut(s)	249, 281
AsuHPI	GGTGA	1 cut(s)	289
BccI	CCATC	1 cut(s)	274
BfmI	CTRYAG	1 cut(s)	138
BpmI	CTGGAG	1 cut(s)	323
BsaHI	GRCGYC	1 cut(s)	342
Bse1I	ACTGG	2 cut(s)	274, 306
BseGI	GGATG	3 cut(s)	25, 100, 289
BseNI	ACTGG	2 cut(s)	274, 306
BsgI	GTGCAG	1 cut(s)	351
BslFI	GGGAC	1 cut(s)	53
BsmFI	GGGAC	1 cut(s)	53
Bsp143I	GATC	1 cut(s)	169
BspPI	GGATC	1 cut(s)	164
BsrI	ACTGG	2 cut(s)	274, 306
BssMI	GATC	1 cut(s)	169
BssNI	GRCGYC	1 cut(s)	342
Bst4CI	ACNGT	1 cut(s)	139
BstACI	GRCGYC	1 cut(s)	342
BstDEI	CTNAG	1 cut(s)	63
BstF5I	GGATG	3 cut(s)	25, 100, 289
BstKTI	GATC	1 cut(s)	172
BstMBI	GATC	1 cut(s)	169
BstNSI	RCATGY	1 cut(s)	60
BstSFI	CTRYAG	1 cut(s)	138
BstX2I	RGATCY	1 cut(s)	169
BstYI	RGATCY	1 cut(s)	169
BtsCI	GGATG	3 cut(s)	25, 100, 289
BtsIMutI	CAGTG	3 cut(s)	218, 267, 299
CaiI	CAGNNNCTG	2 cut(s)	173, 205
CseI	GACGC	1 cut(s)	331
Csp6I	GTAC	2 cut(s)	60, 253
CspCI	CAANNNNNGTGG	2 cut(s)	123, 158
CviAII	CATG	1 cut(s)	57
CviQI	GTAC	2 cut(s)	60, 253
DdeI	CTNAG	1 cut(s)	63
DpnI	GATC	1 cut(s)	171
DpnII	GATC	1 cut(s)	169
DraI	TTTAAA	1 cut(s)	156
FaeI	CATG	1 cut(s)	60
FaiI	YATR	6 cut(s)	47, 58, 218, 323, 359, 392
FalI	AAGNNNNNCTT	2 cut(s)	221, 253
FaqI	GGGAC	1 cut(s)	53
FatI	CATG	1 cut(s)	56
FokI	GGATG	3 cut(s)	12, 87, 296
GsuI	CTGGAG	1 cut(s)	323
HgaI	GACGC	1 cut(s)	331
Hin1I	GRCGYC	1 cut(s)	342
Hin1II	CATG	1 cut(s)	60
HinfI	GANTC	1 cut(s)	208
HphI	GGTGA	1 cut(s)	289
Hpy188I	TCNGA	2 cut(s)	18, 207
Hpy188III	TCNNGA	2 cut(s)	173, 346
HpyAV	CCTTC	3 cut(s)	67, 140, 396
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4V	TGCA	3 cut(s)	86, 332, 387
HpyF3I	CTNAG	1 cut(s)	63
Hsp92I	GRCGYC	1 cut(s)	342
Hsp92II	CATG	1 cut(s)	60
Kzo9I	GATC	1 cut(s)	169
LmnI	GCTCC	1 cut(s)	304
LpnPI	CCDG	5 cut(s)	77, 186, 192, 255, 287
MaeIII	GTNAC	2 cut(s)	265, 295
MalI	GATC	1 cut(s)	171
MboI	GATC	1 cut(s)	169
MboII	GAAGA	2 cut(s)	172, 325
MflI	RGATCY	1 cut(s)	169
MluCI	AATT	3 cut(s)	32, 81, 87
MmeI	TCCRAC	1 cut(s)	158
MnlI	CCTC	1 cut(s)	45
MseI	TTAA	3 cut(s)	80, 155, 228
NdeII	GATC	1 cut(s)	169
NlaIII	CATG	1 cut(s)	60
NmuCI	GTSAC	1 cut(s)	265
NspI	RCATGY	1 cut(s)	60
PfeI	GAWTC	1 cut(s)	208
PsiI	TTATAA	1 cut(s)	47
PstNI	CAGNNNCTG	2 cut(s)	173, 205
PsuI	RGATCY	1 cut(s)	169
RsaI	GTAC	2 cut(s)	61, 254
RsaNI	GTAC	2 cut(s)	60, 253
SaqAI	TTAA	3 cut(s)	80, 155, 228
Sau3AI	GATC	1 cut(s)	169
SetI	ASST	2 cut(s)	78, 407
SfcI	CTRYAG	1 cut(s)	138
Sse9I	AATT	3 cut(s)	32, 81, 87
TaaI	ACNGT	1 cut(s)	139
TasI	AATT	3 cut(s)	32, 81, 87
TatI	WGTACW	2 cut(s)	59, 252
TfiI	GAWTC	1 cut(s)	208
Tru1I	TTAA	3 cut(s)	80, 155, 228
Tru9I	TTAA	3 cut(s)	80, 155, 228
TscAI	CASTG	3 cut(s)	218, 274, 306
TseFI	GTSAC	1 cut(s)	265
Tsp45I	GTSAC	1 cut(s)	265
TspDTI	ATGAA	3 cut(s)	86, 300, 326
TspRI	CASTG	3 cut(s)	218, 274, 306
XapI	RAATTY	1 cut(s)	32
XceI	RCATGY	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.