Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0003769

Physical Location & Seq

Genomic Coordinates Reverse (-)

94980 .. 111933

Gene Structure 16954 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG000300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2874 bp

ATGGCGCTATCGGCGTCTGACCTACCGGCCATGTTCTCGTTGCTGAGTAACTCATTGAGTGGTGATGAGAGTGTCCGGAAACCGGCAGAGGCGGCGCTCTCTCAGTCGGAGGCGAGGCCTGGTTTCTGCTCTTGTCTCATGGAAGTCATAACAGCCAAGGATTTGGCACCTCATGTAGATGTTCGCTTGATGGCTTCAGTGTATTTCAAAAATAGTATTAATCGTTACTGGAGGCACAGGCGTGATTCCTCGGGAATTAGCAACGAGGAGAAACTATATCTCAGACAAAAACTCTTATCACACTTCGGGGAAGAGAACTATCAGATAGCGCAAATGTTGGCTGTGCTTGTTTCCAAAATTGCTCGTATAGATTACCCGAGAGAATGGCCTGAGCTCTTTTCTGTTTTAGCACAGAAGCTTCAATCAGCAGATATTCTTTCTTCGCACAGAATTTTTTTGACCCTCTTTCGAACCTTGAAGGAGTTGTCCACCAAGCGTCTCATCTCAGACCAAAAGAACTTTGCAGAGATATCAGCTCGCTTCTTTGATTATAGCTGGCACCTTTGGCAGACAGATGTGCAAACGTTGTTACATGGTTTTTCTACATTGACTCAAAGCTACAATTCAAATACATTGGAGCAACATCACGATGATCTTTATCTAACATGTGAGCGATGGCTGTTGTGCCTAAAGATAATACGCCAATTAATAGTTTCAGGGTTTCCAAGTGACGCAAAATGTGTACAGGAGGTCCGACCAGTCATGGAGGTCTCGCCCATGCTCTTGAATGCCATTCAGTCATTTCTCCCATACTATTCATCTTTTCAGAAAGGACATCCTAAATTTTTGGACTTCCTAAAGAGGGCTTGTACTAAACTGATGAAGGTTTTAATTGCACTTCAGGGCAGGCATCCTTATTCATTTAGTGATAAATGCGTCCTTCCGACTGTAGTTGATTTCTGTTTACAGAAGATAACAGATCCTGATCCAGATGTATTATCCTTTGAGCAGTTTCTGATTCAATGTATGGTAATGATTAAATCTATATTAGAATGTAAAGAGTACAAGCCAAGTCTCACTGGTCGGGTGATGGATGAAAATGGGGTTACACTGGAGCAAATGAAGAAAAATATATCTGGTGCTGTCAGTGGCATCTTGACTTCCCTCATGACAAGTGAACGCATTATAGTCTTGTGTAATACACTGATAAGAAGGTATTTTGTTCTAACAACAAGTGATTTGGAAGAGTGGTACCAGAATCCTGAATCTTTTCATCATGAGCAGGATATGGTTCAGTGGACAGAAAAATTAAGGCCATGTGCTGAAGCTTTATACATTGTTCTTTTTGAAAACCACAGCCAGCTCCTAGGGCCTGTTGTGGTTTCCATCCTTCAAGAGGCAATGAATGGCTGCCCATCTTCAGTGACTGAAATCACTCCAGGGTTGCTTCTTAAAGATGCTGCTTATGGTGCTGCTGCATATGTTTATTACGAACTCTCAAATTACCTGAGCTTTAAAGATTGGTTTAATGGTGCATTATCCCTTGAACTCTCAAATGATCATCCAAATATGCGTATCATCCACCGGAAAGTTGCACTAATTTTGGGTCAATGGGTTTCTGAGATTAAAGAGGACACAAAGAGGCCAGTTTACTGTGCTTTAATCCGATTACTACAGGACAAAGACCTATCTGTTAGGTTGGCAGCCTGTAGGTCTCTGTGTTCGCATATTGAAGATGCTAGCTTTTCAGAGGGAGAATTCATTGATCTTCTCCCTATATGTTGGGATTCAAGTTTTAGGTTGATTGAGGAAGTTCAGGAGTTTGACTCGAAGGTTCAGGTTTTGAATTTGATTTCTGTTCTCATTGGACATGTGACTGAAGTTATTCCGTTCGCAAACAAGCTTGTTCTATTTTTTCAGAAGGTTTGGGAGGAATCTTCTGGTGAATGCCTTCTGCAGATTCAACTTCTCATTGCATTGAAGAACTTTGTGGTCGCACTTGGTTACCAATCACCTCTTTGCTACAACATATTGCTGCCCGTTCTGCAAAAGGGAATCGATATAAATAGCCCTGATGAACTCAATCTTCTAGAGGATAGCATGCTGTTATGGGAAGCCACACTTTCTCAAGCCCCTTCAATGGTGCCTCAACTACTAGCATACTTCCCTTGTTTAGTTGAGATTCTGGAAAGAAGTTTTGATCACTTGCAGTGTTTCCCTACAGAAGTACCACAGTTGATCAGCAGTGCATTACAAAAATTAATTGTTATATGCATAACTGGAGCTGATGACCGAGATCCTTCTAAGGCCACTGTTAAAGCATCTTCGGCTGCCATCTTGGCAAGAATATTGGTTATGAATACCAATTACCTAGCACACTTGACGTCCGAGCCATCACTTTTGTTGCTCCTTCAAAAGTCGGGTGTCCCAATTGAGGAAAATATACTTCTTTCTCTCGTTGACATATGGCTTGACAAGGTAGATAATGTATCTTCGGTCCAAAGGAAGACATATGGCTTGGCCCTTTCTATTATTCTGACATTAAGACTTCCTCAAGTCCTCGTTAAACTTGATCAGATTCTGAGTGTGTGTACGACTGTAATTTTGGGTGGCAATGATGACTTAGTAGAGGAGTCCAGTGGTGATAGTATAAGCTCCAGCGGGTCTCTTAGTAAGGACAGCATTCCGAGTAAAGAATTGCGAAGAAGACAGGTCAAGTTTACAGACCCTATAAACCATATGTCTCTGGAGGCTTCAGTAAGGGAAAACCTTCAAACATGTGCTGCCCTTCATGGAGAATCTTTTAGTAAGGCCATCGATAACATGCATCCCTCGGCCCTTACACAGTTGAAGCAGGCATTAAAGATGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001650 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005730 GO:0005737 GO:0005829 GO:0006810 GO:0008104 GO:0008150 GO:0008565 GO:0012505 GO:0015031 GO:0015833 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0033036 GO:0042886 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044452 GO:0044464 GO:0045184 GO:0051179 GO:0051234 GO:0070013 GO:0071702 GO:0071705

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBN_N Xpo1

Protein Analysis

957

Amino Acids

108.01

Weight (kDa)

5.64

Isoelectric Point (pI)

48.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBN_N	PF03810	29 - 103	4.8e-15	Importin-beta N-terminal domain
TPR_IPO11	PF25758	655 - 737	1.5e-20	Importin-11-like, TPR repeats
TPR_IPO11	PF25758	748 - 954	2.8e-30	Importin-11-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0003769)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08960 AT3G08960 AT3G08960
fragaria_vesca	FvH4_4g00010 FvH4_4g00010 FvH4_4g00010 FvH4_4g00010 FvH4_4g00010 FvH4_4g00010 FvH4_4g00010 FvH4_4g00010 FvH4_4g00010 FvH4_4g00010 FvH4_4g00010 FvH4_4g00010
malus_domestica	MD04G1000200.v1.1 MD04G1000400.v1.1
prunus_persica	Prupe.1G000100_v2.0.a1 Prupe.1G000100_v2.0.a1 Prupe.1G000300_v2.0.a1 Prupe.1G000300_v2.0.a1
pyrus_communis	pycom04g00040 pycom04g00060 pycom04g00090
rosa_laevigata	RLG00000010280
rosa_multiflora	Rmu_sc0006822.1_g000022 Rmu_sc0020186.1_g000001
rosa_roxburghii	Rroxscaffold_5G00332670
rosa_rugosa	Rorug03G0296500
rosa_samantha	Rh4AG000300 Rh4BG000300 Rh4CG000100 Rh4DG000500
rosa_wichuraiana	Rw4G000860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	2387
Acc65I	GGTACC	1 cut(s)	1251
AccB1I	GGYRCC	4 cut(s)	166, 558, 1251, 2143
AccIII	TCCGGA	1 cut(s)	75
AciI	CCGC	2 cut(s)	92, 2661
AclI	AACGTT	1 cut(s)	584
AclWI	GGATC	3 cut(s)	974, 980, 2291
AcoI	YGGCCR	1 cut(s)	27
AcsI	RAATTY	4 cut(s)	450, 842, 1757, 1846
AcuI	CTGAAG	6 cut(s)	180, 884, 1344, 1404, 1899, 2739
AcyI	GRCGYC	2 cut(s)	14, 2384
AfaI	GTAC	6 cut(s)	744, 871, 1064, 1253, 2229, 2593
AfiI	CCNNNNNNNGG	5 cut(s)	82, 862, 1396, 2140, 2434
AflIII	ACRYGT	3 cut(s)	665, 1870, 2777
AjnI	CCWGG	2 cut(s)	118, 1438
AleI	CACNNNNGTG	1 cut(s)	240
Alw21I	GWGCWC	1 cut(s)	396
Alw26I	GTCTC	7 cut(s)	140, 503, 775, 1079, 1719, 2670, 2748
AlwI	GGATC	3 cut(s)	974, 980, 2291
AlwNI	CAGNNNCTG	4 cut(s)	983, 1015, 1427, 2581
Ama87I	CYCGRG	2 cut(s)	250, 376
Aor13HI	TCCGGA	1 cut(s)	75
ApeKI	GCWGC	8 cut(s)	1410, 1460, 1472, 1475, 1703, 2035, 2330, 2783
ApoI	RAATTY	4 cut(s)	450, 842, 1757, 1846
ArsI	GACNNNNNNTTYG	2 cut(s)	2587, 2619
AseI	ATTAAT	3 cut(s)	219, 707, 2261
Asp700I	GAANNNNTTC	4 cut(s)	1269, 1884, 1950, 2769
Asp718I	GGTACC	1 cut(s)	1251
AspA2I	CCTAGG	1 cut(s)	1366
AspLEI	GCGC	3 cut(s)	7, 97, 331
AspS9I	GGNCC	5 cut(s)	751, 1370, 2497, 2521, 2836
AsuHPI	GGTGA	5 cut(s)	74, 1099, 1955, 2004, 2654
AsuII	TTCGAA	1 cut(s)	469
AsuNHI	GCTAGC	1 cut(s)	1739
AvaI	CYCGRG	2 cut(s)	250, 376
AvaII	GGWCC	2 cut(s)	751, 2497
AvrII	CCTAGG	1 cut(s)	1366
BaeI	ACNNNNGTAYC	2 cut(s)	2211, 2244
BanI	GGYRCC	4 cut(s)	166, 558, 1251, 2143
BanII	GRGCYC	1 cut(s)	396
BbsI	GAAGAC	2 cut(s)	2513, 2713
Bbv12I	GWGCWC	1 cut(s)	396
BbvI	GCAGC	8 cut(s)	1397, 1447, 1459, 1462, 1715, 2022, 2317, 2770
BccI	CCATC	9 cut(s)	184, 669, 1084, 1394, 1423, 2342, 2401, 2822, 2860
BciT130I	CCWGG	2 cut(s)	120, 1440
BclI	TGATCA	4 cut(s)	1558, 2200, 2238, 2572
BcoDI	GTCTC	7 cut(s)	140, 503, 775, 1079, 1719, 2670, 2748
BfaI	CTAG	5 cut(s)	1367, 1740, 2090, 2156, 2372
BfmI	CTRYAG	5 cut(s)	948, 1673, 1708, 1955, 2220
BfoI	RGCGCY	2 cut(s)	8, 98
BglI	GCCNNNNNGGC	1 cut(s)	2339
BisI	GCNGC	9 cut(s)	93, 1411, 1461, 1473, 1476, 1704, 2036, 2331, 2784
BlnI	CCTAGG	1 cut(s)	1366
BlsI	GCNGC	9 cut(s)	94, 1412, 1462, 1474, 1477, 1705, 2037, 2332, 2785
Bme1390I	CCNGG	2 cut(s)	120, 1440
Bme18I	GGWCC	2 cut(s)	751, 2497
BmeT110I	CYCGRG	2 cut(s)	250, 376
BmgT120I	GGNCC	5 cut(s)	751, 1370, 2497, 2521, 2836
BmiI	GGNNCC	4 cut(s)	168, 560, 1253, 2145
BmrFI	CCNGG	2 cut(s)	120, 1440
BmsI	GCATC	6 cut(s)	919, 1161, 1447, 1726, 2330, 2836
BmtI	GCTAGC	1 cut(s)	1743
BpiI	GAAGAC	2 cut(s)	2513, 2713
BplI	GAGNNNNNCTC	2 cut(s)	1811, 1843
BpmI	CTGGAG	6 cut(s)	250, 1133, 1422, 2301, 2641, 2768
Bpu10I	CCTNAGC	2 cut(s)	390, 1508
Bpu14I	TTCGAA	1 cut(s)	469
BpuEI	CTTGAG	2 cut(s)	2112, 2538
Bsa29I	ATCGAT	2 cut(s)	2058, 2817
BsaBI	GATNNNNATC	2 cut(s)	657, 984
BsaHI	GRCGYC	2 cut(s)	14, 2384
BsaI	GGTCTC	3 cut(s)	775, 1719, 2670
BsaJI	CCNNGG	5 cut(s)	156, 249, 1366, 1439, 2832
BsaWI	WCCGGW	2 cut(s)	75, 1584
Bsc4I	CCNNNNNNNGG	5 cut(s)	82, 862, 1396, 2140, 2434
Bse118I	RCCGGY	2 cut(s)	25, 82
Bse1I	ACTGG	7 cut(s)	233, 758, 1084, 1116, 1646, 2284, 2637
Bse3DI	GCAATG	3 cut(s)	1407, 1971, 2620
Bse8I	GATNNNNATC	2 cut(s)	657, 984
BseAI	TCCGGA	1 cut(s)	75
BseBI	CCWGG	2 cut(s)	120, 1440
BseCI	ATCGAT	2 cut(s)	2058, 2817
BseDI	CCNNGG	5 cut(s)	156, 249, 1366, 1439, 2832
BseGI	GGATG	7 cut(s)	835, 910, 1099, 1386, 1561, 1578, 2827
BseJI	GATNNNNATC	2 cut(s)	657, 984
BseLI	CCNNNNNNNGG	5 cut(s)	82, 862, 1396, 2140, 2434
BseMI	GCAATG	3 cut(s)	1407, 1971, 2620
BseMII	CTCAG	8 cut(s)	35, 116, 295, 381, 519, 1499, 1611, 2573
BseNI	ACTGG	7 cut(s)	233, 758, 1084, 1116, 1646, 2284, 2637
BseRI	GAGGAG	2 cut(s)	281, 2645
BseXI	GCAGC	8 cut(s)	1397, 1447, 1459, 1462, 1715, 2022, 2317, 2770
BshNI	GGYRCC	4 cut(s)	166, 558, 1251, 2143
BshVI	ATCGAT	2 cut(s)	2058, 2817
BsiHKAI	GWGCWC	1 cut(s)	396
BsiHKCI	CYCGRG	2 cut(s)	250, 376
BsiSI	CCGG	4 cut(s)	26, 76, 83, 1585
BslFI	GGGAC	1 cut(s)	2411
BslI	CCNNNNNNNGG	5 cut(s)	82, 862, 1396, 2140, 2434
BsmAI	GTCTC	7 cut(s)	140, 503, 775, 1079, 1719, 2670, 2748
BsmBI	CGTCTC	1 cut(s)	503
BsmFI	GGGAC	1 cut(s)	2411
BsmI	GAATGC	3 cut(s)	793, 1952, 2682
Bso31I	GGTCTC	3 cut(s)	775, 1719, 2670
BsoBI	CYCGRG	2 cut(s)	250, 376
Bsp119I	TTCGAA	1 cut(s)	469
Bsp1286I	GDGCHC	1 cut(s)	396
Bsp13I	TCCGGA	1 cut(s)	75
Bsp1407I	TGTACA	1 cut(s)	742
Bsp143I	GATC	9 cut(s)	652, 979, 985, 1558, 1765, 2200, 2238, 2296, 2572
BspACI	CCGC	2 cut(s)	92, 2661
BspCNI	CTCAG	8 cut(s)	36, 115, 294, 382, 518, 1500, 1612, 2574
BspDI	ATCGAT	2 cut(s)	2058, 2817
BspEI	TCCGGA	1 cut(s)	75
BspHI	TCATGA	2 cut(s)	1167, 1276
BspLI	GGNNCC	4 cut(s)	168, 560, 1253, 2145
BspMAI	CTGCAG	1 cut(s)	1959
BspOI	GCTAGC	1 cut(s)	1743
BspPI	GGATC	3 cut(s)	974, 980, 2291
BspT104I	TTCGAA	1 cut(s)	469
BspT107I	GGYRCC	4 cut(s)	166, 558, 1251, 2143
BspTNI	GGTCTC	3 cut(s)	775, 1719, 2670
BsrDI	GCAATG	3 cut(s)	1407, 1971, 2620
BsrFI	RCCGGY	2 cut(s)	25, 82
BsrGI	TGTACA	1 cut(s)	742
BsrI	ACTGG	7 cut(s)	233, 758, 1084, 1116, 1646, 2284, 2637
BssAI	RCCGGY	2 cut(s)	25, 82
BssECI	CCNNGG	5 cut(s)	156, 249, 1366, 1439, 2832
BssMI	GATC	9 cut(s)	652, 979, 985, 1558, 1765, 2200, 2238, 2296, 2572
BssNI	GRCGYC	2 cut(s)	14, 2384
BssT1I	CCWWGG	2 cut(s)	156, 1366
Bst2UI	CCWGG	2 cut(s)	120, 1440
Bst4CI	ACNGT	6 cut(s)	949, 1655, 2235, 2314, 2599, 2847
Bst6I	CTCTTC	2 cut(s)	306, 1239
BstACI	GRCGYC	2 cut(s)	14, 2384
BstAUI	TGTACA	1 cut(s)	742
BstBI	TTCGAA	1 cut(s)	469
BstC8I	GCNNGC	7 cut(s)	538, 557, 908, 1361, 1741, 2102, 2856
BstEII	GGTNACC	1 cut(s)	2003
BstENI	CCTNNNNNAGG	1 cut(s)	1394
BstF5I	GGATG	7 cut(s)	835, 910, 1099, 1386, 1561, 1578, 2827
BstH2I	RGCGCY	2 cut(s)	8, 98
BstHHI	GCGC	3 cut(s)	7, 97, 331
BstKTI	GATC	9 cut(s)	655, 982, 988, 1561, 1768, 2203, 2241, 2299, 2575
BstMAI	GTCTC	7 cut(s)	140, 503, 775, 1079, 1719, 2670, 2748
BstMBI	GATC	9 cut(s)	652, 979, 985, 1558, 1765, 2200, 2238, 2296, 2572
BstMWI	GCNNNNNNNGC	8 cut(s)	11, 92, 565, 1369, 1469, 2044, 2327, 2339
BstNI	CCWGG	2 cut(s)	120, 1440
BstNSI	RCATGY	5 cut(s)	669, 1874, 2104, 2781, 2827
BstPI	GGTNACC	1 cut(s)	2003
BstSCI	CCNGG	2 cut(s)	118, 1438
BstSFI	CTRYAG	5 cut(s)	948, 1673, 1708, 1955, 2220
BstV1I	GCAGC	8 cut(s)	1397, 1447, 1459, 1462, 1715, 2022, 2317, 2770
BstV2I	GAAGAC	2 cut(s)	2513, 2713
BstX2I	RGATCY	2 cut(s)	979, 2296
BstXI	CCANNNNNNTGG	1 cut(s)	163
BstYI	RGATCY	2 cut(s)	979, 2296
Bsu15I	ATCGAT	2 cut(s)	2058, 2817
BsuTUI	ATCGAT	2 cut(s)	2058, 2817
BtgZI	GCGATG	1 cut(s)	688
BtsCI	GGATG	7 cut(s)	835, 910, 1099, 1386, 1561, 1578, 2827
BtsI	GCAGTG	2 cut(s)	2216, 2251
Cac8I	GCNNGC	7 cut(s)	538, 557, 908, 1361, 1741, 2102, 2856
CaiI	CAGNNNCTG	4 cut(s)	983, 1015, 1427, 2581
CciI	TCATGA	2 cut(s)	1167, 1276
CfoI	GCGC	3 cut(s)	7, 97, 331
Cfr10I	RCCGGY	2 cut(s)	25, 82
Cfr13I	GGNCC	5 cut(s)	751, 1370, 2497, 2521, 2836
ClaI	ATCGAT	2 cut(s)	2058, 2817
CseI	GACGC	4 cut(s)	3, 485, 740, 925
Csp6I	GTAC	6 cut(s)	743, 870, 1063, 1252, 2228, 2592
CviQI	GTAC	6 cut(s)	743, 870, 1063, 1252, 2228, 2592
DpnI	GATC	9 cut(s)	654, 981, 987, 1560, 1767, 2202, 2240, 2298, 2574
DpnII	GATC	9 cut(s)	652, 979, 985, 1558, 1765, 2200, 2238, 2296, 2572
DraI	TTTAAA	1 cut(s)	1516
EaeI	YGGCCR	1 cut(s)	27
Eam1104I	CTCTTC	2 cut(s)	306, 1239
EarI	CTCTTC	2 cut(s)	306, 1239
Ecl136II	GAGCTC	1 cut(s)	394
Eco130I	CCWWGG	2 cut(s)	156, 1366
Eco147I	AGGCCT	1 cut(s)	118
Eco24I	GRGCYC	1 cut(s)	396
Eco31I	GGTCTC	3 cut(s)	775, 1719, 2670
Eco32I	GATATC	1 cut(s)	531
Eco47I	GGWCC	2 cut(s)	751, 2497
Eco53kI	GAGCTC	1 cut(s)	394
Eco57I	CTGAAG	6 cut(s)	180, 884, 1344, 1404, 1899, 2739
Eco88I	CYCGRG	2 cut(s)	250, 376
Eco91I	GGTNACC	1 cut(s)	2003
EcoICRI	GAGCTC	1 cut(s)	394
EcoNI	CCTNNNNNAGG	1 cut(s)	1394
EcoO109I	RGGNCCY	1 cut(s)	1370
EcoO65I	GGTNACC	1 cut(s)	2003
EcoRI	GAATTC	1 cut(s)	1757
EcoRII	CCWGG	2 cut(s)	118, 1438
EcoRV	GATATC	1 cut(s)	531
EcoT14I	CCWWGG	2 cut(s)	156, 1366
EcoT22I	ATGCAT	2 cut(s)	2276, 2829
EcoT38I	GRGCYC	1 cut(s)	396
ErhI	CCWWGG	2 cut(s)	156, 1366
Esp3I	CGTCTC	1 cut(s)	503
FalI	AAGNNNNNCTT	2 cut(s)	2106, 2138
FaqI	GGGAC	1 cut(s)	2411
FauI	CCCGC	1 cut(s)	2654
FauNDI	CATATG	4 cut(s)	1480, 2465, 2512, 2739
FbaI	TGATCA	4 cut(s)	1558, 2200, 2238, 2572
Fnu4HI	GCNGC	9 cut(s)	93, 1411, 1461, 1473, 1476, 1704, 2036, 2331, 2784
FokI	GGATG	7 cut(s)	822, 897, 1106, 1373, 1548, 1565, 2814
FriOI	GRGCYC	1 cut(s)	396
Fsp4HI	GCNGC	9 cut(s)	93, 1411, 1461, 1473, 1476, 1704, 2036, 2331, 2784
FspBI	CTAG	5 cut(s)	1367, 1740, 2090, 2156, 2372
GlaI	GCGC	3 cut(s)	6, 96, 330
GluI	GCNGC	9 cut(s)	93, 1411, 1461, 1473, 1476, 1704, 2036, 2331, 2784
GsuI	CTGGAG	6 cut(s)	250, 1133, 1422, 2301, 2641, 2768
HaeII	RGCGCY	2 cut(s)	8, 98
HapII	CCGG	4 cut(s)	26, 76, 83, 1585
HgaI	GACGC	4 cut(s)	3, 485, 740, 925
HhaI	GCGC	3 cut(s)	7, 97, 331
Hin1I	GRCGYC	2 cut(s)	14, 2384
Hin6I	GCGC	3 cut(s)	5, 95, 329
HinP1I	GCGC	3 cut(s)	5, 95, 329
HincII	GTYRAC	1 cut(s)	2461
HindII	GTYRAC	1 cut(s)	2461
HindIII	AAGCTT	3 cut(s)	416, 1326, 1901
HpaII	CCGG	4 cut(s)	26, 76, 83, 1585
HphI	GGTGA	5 cut(s)	74, 1099, 1955, 2004, 2654
Hpy166II	GTNNAC	9 cut(s)	489, 743, 965, 1178, 1299, 1651, 2461, 2592, 2721
Hpy8I	GTNNAC	9 cut(s)	489, 743, 965, 1178, 1299, 1651, 2461, 2592, 2721
HpyCH4III	ACNGT	6 cut(s)	949, 1655, 2235, 2314, 2599, 2847
HpyCH4IV	ACGT	2 cut(s)	584, 2384
HpyF10VI	GCNNNNNNNGC	8 cut(s)	11, 92, 565, 1369, 1469, 2044, 2327, 2339
HpySE526I	ACGT	2 cut(s)	584, 2384
Hsp92I	GRCGYC	2 cut(s)	14, 2384
HspAI	GCGC	3 cut(s)	5, 95, 329
Kpn2I	TCCGGA	1 cut(s)	75
KpnI	GGTACC	1 cut(s)	1255
Ksp22I	TGATCA	4 cut(s)	1558, 2200, 2238, 2572
Kzo9I	GATC	9 cut(s)	652, 979, 985, 1558, 1765, 2200, 2238, 2296, 2572
LmnI	GCTCC	6 cut(s)	637, 1114, 1368, 2282, 2412, 2660
Lsp1109I	GCAGC	8 cut(s)	1397, 1447, 1459, 1462, 1715, 2022, 2317, 2770
LweI	GCATC	6 cut(s)	919, 1161, 1447, 1726, 2330, 2836
MaeI	CTAG	5 cut(s)	1367, 1740, 2090, 2156, 2372
MaeII	ACGT	2 cut(s)	584, 2384
MaeIII	GTNAC	8 cut(s)	47, 224, 588, 728, 1105, 1423, 1873, 2003
MalI	GATC	9 cut(s)	654, 981, 987, 1560, 1767, 2202, 2240, 2298, 2574
MboI	GATC	9 cut(s)	652, 979, 985, 1558, 1765, 2200, 2238, 2296, 2572
MfeI	CAATTG	1 cut(s)	2430
MflI	RGATCY	2 cut(s)	979, 2296
MhlI	GDGCHC	1 cut(s)	396
MlyI	GAGTC	3 cut(s)	604, 1820, 2642
MmeI	TCCRAC	3 cut(s)	87, 778, 968
Mph1103I	ATGCAT	2 cut(s)	2276, 2829
MroI	TCCGGA	1 cut(s)	75
MroXI	GAANNNNTTC	4 cut(s)	1269, 1884, 1950, 2769
MslI	CAYNNNNRTG	3 cut(s)	177, 240, 648
MspA1I	CMGCKG	1 cut(s)	2661
MspI	CCGG	4 cut(s)	26, 76, 83, 1585
MspR9I	CCNGG	2 cut(s)	120, 1440
MunI	CAATTG	1 cut(s)	2430
Mva1269I	GAATGC	3 cut(s)	793, 1952, 2682
MvaI	CCWGG	2 cut(s)	120, 1440
MwoI	GCNNNNNNNGC	8 cut(s)	11, 92, 565, 1369, 1469, 2044, 2327, 2339
NdeI	CATATG	4 cut(s)	1480, 2465, 2512, 2739
NdeII	GATC	9 cut(s)	652, 979, 985, 1558, 1765, 2200, 2238, 2296, 2572
NheI	GCTAGC	1 cut(s)	1739
NlaIV	GGNNCC	4 cut(s)	168, 560, 1253, 2145
NmeAIII	GCCGAG	1 cut(s)	2813
NmuCI	GTSAC	3 cut(s)	728, 1423, 1873
NsiI	ATGCAT	2 cut(s)	2276, 2829
NspI	RCATGY	5 cut(s)	669, 1874, 2104, 2781, 2827
NspV	TTCGAA	1 cut(s)	469
OliI	CACNNNNGTG	1 cut(s)	240
PaeI	GCATGC	1 cut(s)	2104
PagI	TCATGA	2 cut(s)	1167, 1276
PceI	AGGCCT	1 cut(s)	118
PciI	ACATGT	3 cut(s)	665, 1870, 2777
PctI	GAATGC	3 cut(s)	793, 1952, 2682
PdmI	GAANNNNTTC	4 cut(s)	1269, 1884, 1950, 2769
PkrI	GCNGC	9 cut(s)	94, 1412, 1462, 1474, 1477, 1705, 2037, 2332, 2785
PleI	GAGTC	3 cut(s)	604, 1820, 2641
PpsI	GAGTC	3 cut(s)	604, 1820, 2641
PscI	ACATGT	3 cut(s)	665, 1870, 2777
PshBI	ATTAAT	3 cut(s)	219, 707, 2261
Psp124BI	GAGCTC	1 cut(s)	396
Psp1406I	AACGTT	1 cut(s)	584
Psp6I	CCWGG	2 cut(s)	118, 1438
PspEI	GGTNACC	1 cut(s)	2003
PspGI	CCWGG	2 cut(s)	118, 1438
PspN4I	GGNNCC	4 cut(s)	168, 560, 1253, 2145
PspPI	GGNCC	5 cut(s)	751, 1370, 2497, 2521, 2836
PstI	CTGCAG	1 cut(s)	1959
PstNI	CAGNNNCTG	4 cut(s)	983, 1015, 1427, 2581
PsuI	RGATCY	2 cut(s)	979, 2296
RsaI	GTAC	6 cut(s)	744, 871, 1064, 1253, 2229, 2593
RsaNI	GTAC	6 cut(s)	743, 870, 1063, 1252, 2228, 2592
RseI	CAYNNNNRTG	3 cut(s)	177, 240, 648
SacI	GAGCTC	1 cut(s)	396
SatI	GCNGC	9 cut(s)	93, 1411, 1461, 1473, 1476, 1704, 2036, 2331, 2784
Sau3AI	GATC	9 cut(s)	652, 979, 985, 1558, 1765, 2200, 2238, 2296, 2572
Sau96I	GGNCC	5 cut(s)	751, 1370, 2497, 2521, 2836
SchI	GAGTC	3 cut(s)	604, 1820, 2642
ScrFI	CCNGG	2 cut(s)	120, 1440
SduI	GDGCHC	1 cut(s)	396
SfaNI	GCATC	6 cut(s)	919, 1161, 1447, 1726, 2330, 2836
SfcI	CTRYAG	5 cut(s)	948, 1673, 1708, 1955, 2220
SfuI	TTCGAA	1 cut(s)	469
SinI	GGWCC	2 cut(s)	751, 2497
SmiMI	CAYNNNNRTG	3 cut(s)	177, 240, 648
SmlI	CTYRAG	2 cut(s)	2127, 2553
SmoI	CTYRAG	2 cut(s)	2127, 2553
SphI	GCATGC	1 cut(s)	2104
SseBI	AGGCCT	1 cut(s)	118
SsiI	CCGC	2 cut(s)	92, 2661
SspI	AATATT	1 cut(s)	2349
SspMI	CTAG	5 cut(s)	1367, 1740, 2090, 2156, 2372
SstI	GAGCTC	1 cut(s)	396
StuI	AGGCCT	1 cut(s)	118
StyD4I	CCNGG	2 cut(s)	118, 1438
StyI	CCWWGG	2 cut(s)	156, 1366
TaaI	ACNGT	6 cut(s)	949, 1655, 2235, 2314, 2599, 2847
TaiI	ACGT	2 cut(s)	587, 2387
TaqI	TCGA	4 cut(s)	469, 1829, 2058, 2817
TaqII	GACCGA	2 cut(s)	2307, 2485
TatI	WGTACW	3 cut(s)	742, 869, 1062
TauI	GCSGC	1 cut(s)	95
TseFI	GTSAC	3 cut(s)	728, 1423, 1873
TseI	GCWGC	8 cut(s)	1410, 1460, 1472, 1475, 1703, 2035, 2330, 2783
Tsp45I	GTSAC	3 cut(s)	728, 1423, 1873
TspGWI	ACGGA	1 cut(s)	1878
VpaK11BI	GGWCC	2 cut(s)	751, 2497
VspI	ATTAAT	3 cut(s)	219, 707, 2261
XagI	CCTNNNNNAGG	1 cut(s)	1394
XapI	RAATTY	4 cut(s)	450, 842, 1757, 1846
XbaI	TCTAGA	1 cut(s)	2089
XceI	RCATGY	5 cut(s)	669, 1874, 2104, 2781, 2827
XmaJI	CCTAGG	1 cut(s)	1366
XmnI	GAANNNNTTC	4 cut(s)	1269, 1884, 1950, 2769
XspI	CTAG	5 cut(s)	1367, 1740, 2090, 2156, 2372
ZraI	GACGTC	1 cut(s)	2385
Zsp2I	ATGCAT	2 cut(s)	2276, 2829

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.