Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003769

Physical Location & Seq

Genomic Coordinates Reverse (-)

30532600 .. 30537268

Gene Structure 4669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0296500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2340 bp

ATGTCGAAGAGGAAGTTCGGATTCGAAGGGTTCGGCATAAACCGGCAATCGACCTACAACTTCGAGCAGTCGCAACAAGACCCTCAGCGACTCTACGTCCCTCCTTCCTCCTCCCGCGCTCACGGCCACGACAATTACGAAGACACCGACCTTGACAACATCGATTACGACGACATTGAAGCCGGAAACACTCACGGTAACGGCGGAGGAGACGGCGGTGACGAAGAAGTCGATCCTCTCGATGCTTTCATGGAGGGGATTCACCAGGAGGTGAGGTCAGCTCCGCCGCCCAAGCCCAAGGAGAAGGCCGACAAGTACCAGGACGATGACGAGGAGGATCATCTGGAGAGTTTCTTGAGGGCCAAGAAGGACGCCACGCTGACTCTGGCCTCCGACGCGCTCCACGCCGGCTATGATTCCGACGAGGAGGTCTATGCCGCTGCCAAGGCTGTGGATGCCGGAATGTTGGAGTATGATTCCGATGACAATCCCGTTGTTGTGGACAGGAGGAAGATCGAGCCAATTTCAGCTCTGGATCATACTTCCATTGACTACGAGCCATTCACCAAGGACTTCTACGAGGAGAAAGAGTCGATTTCAGGGATGAGTGAGCAGGATGTTGCTGAGTACCGGAAGAGCTTGGCCATCCGAGTGTCTGGCTTTGATGTACCAAGGCCAATTAAGACATTTGATGACTCTGCGTTTTCTCCGCAACTCATGAATGCAATTAAAAAACAAGAGTATGAAAAGCCTACACCGATACAGTGCCAAGCTTTGCCCATAGTTCTTTCTGGGAGGGATATCATTGGTATAGCAAAAACTGGCTCCGGAAAGACTGCCGCTTTTGTACTTCCCATGATTTGCCATATTATGGATCAGCCAGAACTTCAGAAAGAAGAAGGTCCTATAGGAGTCATATGTGCACCTACCAGAGAACTGGCGCAACAAATACACTTAGAGGCCAAGAAATTTGCTAAATCACATGGCATCCGTGTCTGTGCTGTATATGGTGGGATGTCGAAGCTTGATCAGTTCAAAGAACTTAAGGCAGGATGCGAGATAGTTGTAGCTACTCCTGGGAGATTGATAGACATGATTAAAATGAGGGCACTGACGATGCTACGTGTAACTTACCTAGTGCTTGATGAGGCTGATCGGATGTTTGACCTTGGTTTTGAGCCTCAAATTAGGTCTATAGTTGGTCAGATTAGGCCAGACCGGCAAACGCTACTCTTTTCTGCTACAATGCCACGTAAAGTTGAAAAGTTGGCTAGAGAAATTCTTTCTGACCCTGTAAGAGTTACAGTGGGTGAGGTGGGAATGGCCAATGAGGATATCACTCAAGTTGTTCATGTACTTCCTTCTGAAGCTGAGAAATTGCCGTGGCTTCTTGAAAGATTACCTGGTATGATTGATGACGGTGATGTTCTCGTATTTGCTTCTAAAAAAGCTGCAGTGGATGAGATCGAAACACAGCTTTCTCAGAAAGGTTTTAAAGTTGCAGCTATTCATGGTGATAAGGACCAGGCTACTAGGATGGATATTATGCAAAAATATAAATCTGGCATCTACCATGTTCTGATTGCAACTGATGTTGCTGCTCGTGGTCTTAACATCAAGTCAATTAAGTCAGTTGTGAACTTTGATATTGCAAAAGACATGGACATGCATGTTCATCGTATTGGTAGAACGGGTCGTGCCGGTGATAAAGATGGGACGGCATACACTCTTATCACGCATAAAGAGGCACGGTTTGCTGGAGAATTGGTTAATAGCTTAGTTGGTGCTGGTCAGAATGTTCCCGCAGAGCTCATGGACCTTGCGATGAAGGATGGAAGATTCAGGTCTAAACGTGATTCAAGAAAAGGAGGTGGAAAGAAGGGTAGGGGGAGAGGTGGTGGTGGAGGCGGTGGCGGCAGTGGTCGAGGTGTGCGCGGGGTGGATTTTGGTCTGGGTATTGGATATAATCCGGAATCCAATAGTTCTCCATCACCCGCTGTTACTAGTCGATCTGCTGCAGTTACTTCTCTAAGAACAGGAATGATGTCTCAATTCAAGAGTAAGTTTGTTTCTGCTTCATCAAACTCTCCAAGTCAGGGTTCTGGTAACAGTTCGAGTGCGCATGCCAACAAGAGGCCTGCATTACGAGGATTTGTAGCCGGTGGTTCTATTGGTGGAGACATACATAGATCTCAGACAACCAATACAGTTTCTCCAGCTCCTGCACCAGTGGCAAACATATCTTCTCAGAATTCTGGAGAAAATTCGAGCCAGAAGCCGACGGAAAGTTCTAGAGATAAACCTAGAGAAAGGCGGAGGCGCTCTGGTTGGGACTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001650 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005730 GO:0005737 GO:0005829 GO:0006810 GO:0008104 GO:0008150 GO:0008565 GO:0012505 GO:0015031 GO:0015833 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0033036 GO:0042886 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044452 GO:0044464 GO:0045184 GO:0051179 GO:0051234 GO:0070013 GO:0071702 GO:0071705

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBN_N Xpo1

Protein Analysis

779

Amino Acids

84.87

Weight (kDa)

6.05

Isoelectric Point (pI)

48.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	252 - 422	4.6e-52	DEAD/DEAH box helicase
Helicase_C	PF00271	469 - 568	4.4e-26	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003769)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08960 AT3G08960 AT3G08960
fragaria_vesca	FvH4_4g00010 FvH4_4g00010 FvH4_4g00010 FvH4_4g00010 FvH4_4g00010 FvH4_4g00010 FvH4_4g00010 FvH4_4g00010 FvH4_4g00010 FvH4_4g00010 FvH4_4g00010 FvH4_4g00010
malus_domestica	MD04G1000200.v1.1 MD04G1000400.v1.1
prunus_persica	Prupe.1G000100_v2.0.a1 Prupe.1G000100_v2.0.a1 Prupe.1G000300_v2.0.a1 Prupe.1G000300_v2.0.a1
pyrus_communis	pycom04g00040 pycom04g00060 pycom04g00090
rosa_laevigata	RLG00000010280
rosa_multiflora	Rmu_sc0006822.1_g000022 Rmu_sc0020186.1_g000001
rosa_roxburghii	Rroxscaffold_5G00332670
rosa_rugosa	Rorug03G0296500
rosa_samantha	Rh4AG000300 Rh4BG000300 Rh4CG000100 Rh4DG000500
rosa_wichuraiana	Rw4G000860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	227, 428
Acc16I	TGCGCA	1 cut(s)	2121
AccB7I	CCANNNNNTGG	1 cut(s)	871
AccII	CGCG	3 cut(s)	117, 398, 1935
AccIII	TCCGGA	2 cut(s)	827, 1969
AclWI	GGATC	4 cut(s)	227, 345, 543, 882
AcoI	YGGCCR	3 cut(s)	124, 642, 1323
AcsI	RAATTY	4 cut(s)	968, 1278, 2251, 2263
AcuI	CTGAAG	2 cut(s)	872, 1386
AcyI	GRCGYC	1 cut(s)	372
AfaI	GTAC	5 cut(s)	317, 629, 669, 849, 1356
AfiI	CCNNNNNNNGG	3 cut(s)	871, 2096, 2133
AflII	CTTAAG	1 cut(s)	1043
AflIII	ACRYGT	1 cut(s)	1123
AgsI	TTSAA	6 cut(s)	179, 1036, 1262, 1394, 1860, 2056
AhdI	GACNNNNNGTC	1 cut(s)	95
AhlI	ACTAGT	1 cut(s)	2003
AjnI	CCWGG	5 cut(s)	264, 318, 1075, 1402, 1524
AjuI	GAANNNNNNNTTGG	2 cut(s)	2083, 2115
Alw21I	GWGCWC	2 cut(s)	925, 1812
Alw26I	GTCTC	3 cut(s)	204, 2052, 2172
Alw44I	GTGCAC	1 cut(s)	921
AlwI	GGATC	4 cut(s)	227, 345, 543, 882
AlwNI	CAGNNNCTG	1 cut(s)	2222
Aor13HI	TCCGGA	2 cut(s)	827, 1969
ApaLI	GTGCAC	1 cut(s)	921
ApeKI	GCWGC	5 cut(s)	440, 1451, 1502, 1598, 2015
ApoI	RAATTY	4 cut(s)	968, 1278, 2251, 2263
ArsI	GACNNNNNNTTYG	2 cut(s)	1157, 1189
AspLEI	GCGC	6 cut(s)	119, 400, 943, 1935, 2122, 2322
AspS9I	GGNCC	4 cut(s)	360, 902, 1522, 1816
AsuHPI	GGTGA	9 cut(s)	230, 254, 283, 556, 1322, 1433, 1526, 1715, 1983
AsuII	TTCGAA	1 cut(s)	24
AvaII	GGWCC	3 cut(s)	902, 1522, 1816
BaeGI	GKGCMC	2 cut(s)	925, 1111
BalI	TGGCCA	2 cut(s)	644, 1325
BanII	GRGCYC	1 cut(s)	1812
BauI	CACGAG	1 cut(s)	1602
BbsI	GAAGAC	1 cut(s)	147
Bbv12I	GWGCWC	2 cut(s)	925, 1812
BbvCI	CCTCAGC	1 cut(s)	84
BbvI	GCAGC	5 cut(s)	427, 1438, 1514, 1585, 2002
BccI	CCATC	5 cut(s)	653, 1531, 1706, 1826, 1996
BceAI	ACGGC	5 cut(s)	139, 217, 229, 1366, 1734
BcgI	CGANNNNNNTGC	2 cut(s)	1658, 1692
BciT130I	CCWGG	5 cut(s)	266, 320, 1077, 1404, 1526
BclI	TGATCA	1 cut(s)	1027
BcoDI	GTCTC	3 cut(s)	204, 2052, 2172
BcuI	ACTAGT	1 cut(s)	2003
BfaI	CTAG	6 cut(s)	1136, 1272, 1533, 2004, 2292, 2304
BfmI	CTRYAG	4 cut(s)	906, 1194, 1452, 2016
BfoI	RGCGCY	1 cut(s)	2323
BfrI	CTTAAG	1 cut(s)	1043
BglI	GCCNNNNNGGC	1 cut(s)	1219
BglII	AGATCT	1 cut(s)	2189
BisI	GCNGC	9 cut(s)	287, 438, 441, 840, 1452, 1503, 1599, 1915, 2016
BlsI	GCNGC	9 cut(s)	288, 439, 442, 841, 1453, 1504, 1600, 1916, 2017
Bme1390I	CCNGG	5 cut(s)	266, 320, 1077, 1404, 1526
Bme18I	GGWCC	3 cut(s)	902, 1522, 1816
BmeRI	GACNNNNNGTC	1 cut(s)	95
BmgT120I	GGNCC	4 cut(s)	360, 902, 1522, 1816
BmiI	GGNNCC	1 cut(s)	826
BmrFI	CCNGG	5 cut(s)	266, 320, 1077, 1404, 1526
BmsI	GCATC	6 cut(s)	232, 445, 996, 1043, 1107, 1575
BpiI	GAAGAC	1 cut(s)	147
BplI	GAGNNNNNCTC	2 cut(s)	265, 297
BpmI	CTGGAG	4 cut(s)	365, 1779, 2199, 2277
Bpu10I	CCTNAGC	1 cut(s)	84
Bpu14I	TTCGAA	1 cut(s)	24
BpuEI	CTTGAG	2 cut(s)	376, 1326
Bsa29I	ATCGAT	1 cut(s)	162
BsaAI	YACGTR	2 cut(s)	1124, 1253
BsaBI	GATNNNNATC	1 cut(s)	486
BsaHI	GRCGYC	1 cut(s)	372
BsaJI	CCNNGG	7 cut(s)	297, 444, 567, 671, 1076, 1168, 1382
BsaWI	WCCGGW	3 cut(s)	630, 827, 1969
Bsc4I	CCNNNNNNNGG	3 cut(s)	871, 2096, 2133
Bse118I	RCCGGY	5 cut(s)	42, 407, 1218, 1700, 2159
Bse1I	ACTGG	3 cut(s)	826, 942, 2228
Bse8I	GATNNNNATC	1 cut(s)	486
BseAI	TCCGGA	2 cut(s)	827, 1969
BseBI	CCWGG	5 cut(s)	266, 320, 1077, 1404, 1526
BseCI	ATCGAT	1 cut(s)	162
BseDI	CCNNGG	7 cut(s)	297, 444, 567, 671, 1076, 1168, 1382
BseJI	GATNNNNATC	1 cut(s)	486
BseLI	CCNNNNNNNGG	3 cut(s)	871, 2096, 2133
BseMII	CTCAG	6 cut(s)	98, 615, 1362, 1496, 2207, 2261
BseNI	ACTGG	3 cut(s)	826, 942, 2228
BseRI	GAGGAG	5 cut(s)	100, 222, 347, 440, 596
BseSI	GKGCMC	2 cut(s)	925, 1111
BseXI	GCAGC	5 cut(s)	427, 1438, 1514, 1585, 2002
BsgI	GTGCAG	1 cut(s)	2208
Bsh1236I	CGCG	3 cut(s)	117, 398, 1935
BshVI	ATCGAT	1 cut(s)	162
BsiHKAI	GWGCWC	2 cut(s)	925, 1812
BslFI	GGGAC	2 cut(s)	83, 1729
BslI	CCNNNNNNNGG	3 cut(s)	871, 2096, 2133
BsmAI	GTCTC	3 cut(s)	204, 2052, 2172
BsmBI	CGTCTC	1 cut(s)	204
BsmFI	GGGAC	2 cut(s)	83, 1729
BsmI	GAATGC	1 cut(s)	727
Bsp119I	TTCGAA	1 cut(s)	24
Bsp1286I	GDGCHC	3 cut(s)	925, 1111, 1812
Bsp13I	TCCGGA	2 cut(s)	827, 1969
BspCNI	CTCAG	6 cut(s)	97, 616, 1363, 1495, 2206, 2260
BspDI	ATCGAT	1 cut(s)	162
BspEI	TCCGGA	2 cut(s)	827, 1969
BspFNI	CGCG	3 cut(s)	117, 398, 1935
BspHI	TCATGA	1 cut(s)	717
BspLI	GGNNCC	1 cut(s)	826
BspMAI	CTGCAG	2 cut(s)	1456, 2020
BspPI	GGATC	4 cut(s)	227, 345, 543, 882
BspQI	GCTCTTC	1 cut(s)	629
BspT104I	TTCGAA	1 cut(s)	24
BspTI	CTTAAG	1 cut(s)	1043
BsrFI	RCCGGY	5 cut(s)	42, 407, 1218, 1700, 2159
BsrI	ACTGG	3 cut(s)	826, 942, 2228
BssAI	RCCGGY	5 cut(s)	42, 407, 1218, 1700, 2159
BssECI	CCNNGG	7 cut(s)	297, 444, 567, 671, 1076, 1168, 1382
BssNI	GRCGYC	1 cut(s)	372
BssSI	CACGAG	1 cut(s)	1602
BssT1I	CCWWGG	5 cut(s)	297, 444, 567, 671, 1168
Bst2BI	CACGAG	1 cut(s)	1602
Bst2UI	CCWGG	5 cut(s)	266, 320, 1077, 1404, 1526
Bst4CI	ACNGT	8 cut(s)	197, 765, 1306, 1421, 1752, 2111, 2209, 2336
Bst6I	CTCTTC	2 cut(s)	2, 629
BstACI	GRCGYC	1 cut(s)	372
BstAFI	CTTAAG	1 cut(s)	1043
BstAPI	GCANNNNNTGC	1 cut(s)	1754
BstBAI	YACGTR	2 cut(s)	1124, 1253
BstBI	TTCGAA	1 cut(s)	24
BstC8I	GCNNGC	3 cut(s)	409, 2124, 2139
BstDEI	CTNAG	9 cut(s)	84, 624, 955, 1371, 1482, 1777, 2030, 2193, 2247
BstDSI	CCRYGG	1 cut(s)	1382
BstFNI	CGCG	3 cut(s)	117, 398, 1935
BstH2I	RGCGCY	1 cut(s)	2323
BstHHI	GCGC	6 cut(s)	119, 400, 943, 1935, 2122, 2322
BstMAI	GTCTC	3 cut(s)	204, 2052, 2172
BstNI	CCWGG	5 cut(s)	266, 320, 1077, 1404, 1526
BstNSI	RCATGY	3 cut(s)	1669, 1673, 2126
BstSCI	CCNGG	5 cut(s)	264, 318, 1075, 1402, 1524
BstSFI	CTRYAG	4 cut(s)	906, 1194, 1452, 2016
BstSLI	GKGCMC	2 cut(s)	925, 1111
BstUI	CGCG	3 cut(s)	117, 398, 1935
BstV1I	GCAGC	5 cut(s)	427, 1438, 1514, 1585, 2002
BstV2I	GAAGAC	1 cut(s)	147
BstX2I	RGATCY	1 cut(s)	2189
BstXI	CCANNNNNNTGG	2 cut(s)	451, 937
BstYI	RGATCY	1 cut(s)	2189
Bsu15I	ATCGAT	1 cut(s)	162
BsuTUI	ATCGAT	1 cut(s)	162
BtgI	CCRYGG	1 cut(s)	1382
BtgZI	GCGATG	1 cut(s)	1838
BtsI	GCAGTG	2 cut(s)	1461, 1924
BtsIMutI	CAGTG	6 cut(s)	770, 1109, 1311, 1461, 1924, 2235
Cac8I	GCNNGC	3 cut(s)	409, 2124, 2139
CaiI	CAGNNNCTG	1 cut(s)	2222
CciI	TCATGA	1 cut(s)	717
CfoI	GCGC	6 cut(s)	119, 400, 943, 1935, 2122, 2322
Cfr10I	RCCGGY	5 cut(s)	42, 407, 1218, 1700, 2159
Cfr13I	GGNCC	4 cut(s)	360, 902, 1522, 1816
ClaI	ATCGAT	1 cut(s)	162
CseI	GACGC	2 cut(s)	380, 404
CsiI	ACCWGGT	1 cut(s)	1402
Csp6I	GTAC	5 cut(s)	316, 628, 668, 848, 1355
CviQI	GTAC	5 cut(s)	316, 628, 668, 848, 1355
DdeI	CTNAG	9 cut(s)	84, 624, 955, 1371, 1482, 1777, 2030, 2193, 2247
DraI	TTTAAA	1 cut(s)	1495
DrdI	GACNNNNNNGTC	2 cut(s)	227, 428
DriI	GACNNNNNGTC	1 cut(s)	95
DseDI	GACNNNNNNGTC	2 cut(s)	227, 428
EaeI	YGGCCR	3 cut(s)	124, 642, 1323
Eam1104I	CTCTTC	2 cut(s)	2, 629
Eam1105I	GACNNNNNGTC	1 cut(s)	95
EarI	CTCTTC	2 cut(s)	2, 629
EciI	GGCGGA	3 cut(s)	219, 273, 2329
Ecl136II	GAGCTC	1 cut(s)	1810
Eco130I	CCWWGG	5 cut(s)	297, 444, 567, 671, 1168
Eco147I	AGGCCT	1 cut(s)	2137
Eco24I	GRGCYC	1 cut(s)	1812
Eco32I	GATATC	2 cut(s)	802, 1336
Eco47I	GGWCC	3 cut(s)	902, 1522, 1816
Eco53kI	GAGCTC	1 cut(s)	1810
Eco57I	CTGAAG	2 cut(s)	872, 1386
EcoICRI	GAGCTC	1 cut(s)	1810
EcoO109I	RGGNCCY	1 cut(s)	902
EcoRI	GAATTC	1 cut(s)	2251
EcoRII	CCWGG	5 cut(s)	264, 318, 1075, 1402, 1524
EcoRV	GATATC	2 cut(s)	802, 1336
EcoT14I	CCWWGG	5 cut(s)	297, 444, 567, 671, 1168
EcoT22I	ATGCAT	1 cut(s)	1671
EcoT38I	GRGCYC	1 cut(s)	1812
ErhI	CCWWGG	5 cut(s)	297, 444, 567, 671, 1168
Esp3I	CGTCTC	1 cut(s)	204
FaqI	GGGAC	2 cut(s)	83, 1729
FauI	CCCGC	4 cut(s)	122, 1810, 1928, 2002
FauNDI	CATATG	1 cut(s)	917
FbaI	TGATCA	1 cut(s)	1027
Fnu4HI	GCNGC	9 cut(s)	287, 438, 441, 840, 1452, 1503, 1599, 1915, 2016
FriOI	GRGCYC	1 cut(s)	1812
Fsp4HI	GCNGC	9 cut(s)	287, 438, 441, 840, 1452, 1503, 1599, 1915, 2016
FspAI	RTGCGCAY	1 cut(s)	2121
FspBI	CTAG	6 cut(s)	1136, 1272, 1533, 2004, 2292, 2304
FspI	TGCGCA	1 cut(s)	2121
GlaI	GCGC	6 cut(s)	118, 399, 942, 1934, 2121, 2321
GluI	GCNGC	9 cut(s)	287, 438, 441, 840, 1452, 1503, 1599, 1915, 2016
GsuI	CTGGAG	4 cut(s)	365, 1779, 2199, 2277
HaeII	RGCGCY	1 cut(s)	2323
HgaI	GACGC	2 cut(s)	380, 404
HhaI	GCGC	6 cut(s)	119, 400, 943, 1935, 2122, 2322
Hin1I	GRCGYC	1 cut(s)	372
Hin6I	GCGC	6 cut(s)	117, 398, 941, 1933, 2120, 2320
HinP1I	GCGC	6 cut(s)	117, 398, 941, 1933, 2120, 2320
HindIII	AAGCTT	2 cut(s)	771, 1022
HphI	GGTGA	9 cut(s)	230, 254, 283, 556, 1322, 1433, 1526, 1715, 1983
Hpy166II	GTNNAC	3 cut(s)	502, 923, 1639
Hpy8I	GTNNAC	3 cut(s)	502, 923, 1639
Hpy99I	CGWCG	4 cut(s)	173, 398, 425, 2284
HpyAV	CCTTC	8 cut(s)	20, 114, 298, 361, 893, 1371, 1822, 1873
HpyCH4III	ACNGT	8 cut(s)	197, 765, 1306, 1421, 1752, 2111, 2209, 2336
HpyCH4IV	ACGT	4 cut(s)	96, 1123, 1252, 1852
HpyF3I	CTNAG	9 cut(s)	84, 624, 955, 1371, 1482, 1777, 2030, 2193, 2247
HpySE526I	ACGT	4 cut(s)	96, 1123, 1252, 1852
Hsp92I	GRCGYC	1 cut(s)	372
HspAI	GCGC	6 cut(s)	117, 398, 941, 1933, 2120, 2320
Kpn2I	TCCGGA	2 cut(s)	827, 1969
KroI	GCCGGC	1 cut(s)	407
KroNI	GCCGGC	1 cut(s)	409
Ksp22I	TGATCA	1 cut(s)	1027
LguI	GCTCTTC	1 cut(s)	629
LmnI	GCTCC	4 cut(s)	286, 405, 830, 2224
Lsp1109I	GCAGC	5 cut(s)	427, 1438, 1514, 1585, 2002
LweI	GCATC	6 cut(s)	232, 445, 996, 1043, 1107, 1575
MabI	ACCWGGT	1 cut(s)	1402
MaeI	CTAG	6 cut(s)	1136, 1272, 1533, 2004, 2292, 2304
MaeII	ACGT	4 cut(s)	96, 1123, 1252, 1852
MaeIII	GTNAC	7 cut(s)	197, 218, 1126, 1300, 1999, 2020, 2105
MboII	GAAGA	8 cut(s)	19, 152, 236, 523, 646, 908, 1848, 2235
MflI	RGATCY	1 cut(s)	2189
MhlI	GDGCHC	3 cut(s)	925, 1111, 1812
MlsI	TGGCCA	2 cut(s)	644, 1325
MluNI	TGGCCA	2 cut(s)	644, 1325
MlyI	GAGTC	5 cut(s)	84, 376, 599, 689, 921
MmeI	TCCRAC	3 cut(s)	417, 444, 447
Mox20I	TGGCCA	2 cut(s)	644, 1325
Mph1103I	ATGCAT	1 cut(s)	1671
MroI	TCCGGA	2 cut(s)	827, 1969
MroNI	GCCGGC	1 cut(s)	407
MscI	TGGCCA	2 cut(s)	644, 1325
MseI	TTAA	8 cut(s)	681, 729, 1044, 1098, 1494, 1611, 1626, 1770
MslI	CAYNNNNRTG	2 cut(s)	650, 1664
Msp20I	TGGCCA	2 cut(s)	644, 1325
MspA1I	CMGCKG	2 cut(s)	440, 1997
MspCI	CTTAAG	1 cut(s)	1043
MspR9I	CCNGG	5 cut(s)	266, 320, 1077, 1404, 1526
Mva1269I	GAATGC	1 cut(s)	727
MvaI	CCWGG	5 cut(s)	266, 320, 1077, 1404, 1526
MvnI	CGCG	3 cut(s)	117, 398, 1935
NaeI	GCCGGC	1 cut(s)	409
NdeI	CATATG	1 cut(s)	917
NgoMIV	GCCGGC	1 cut(s)	407
NlaIV	GGNNCC	1 cut(s)	826
NmuCI	GTSAC	1 cut(s)	218
NsbI	TGCGCA	1 cut(s)	2121
NsiI	ATGCAT	1 cut(s)	1671
NspI	RCATGY	3 cut(s)	1669, 1673, 2126
NspV	TTCGAA	1 cut(s)	24
PaeI	GCATGC	1 cut(s)	2126
PagI	TCATGA	1 cut(s)	717
PceI	AGGCCT	1 cut(s)	2137
PciSI	GCTCTTC	1 cut(s)	629
PcsI	WCGNNNNNNNCGW	6 cut(s)	135, 144, 168, 219, 228, 237
PctI	GAATGC	1 cut(s)	727
PdiI	GCCGGC	1 cut(s)	409
PfeI	GAWTC	7 cut(s)	21, 259, 416, 476, 1839, 1856, 1973
PflMI	CCANNNNNTGG	1 cut(s)	871
PkrI	GCNGC	9 cut(s)	288, 439, 442, 841, 1453, 1504, 1600, 1916, 2017
PleI	GAGTC	5 cut(s)	84, 376, 598, 689, 920
PpsI	GAGTC	5 cut(s)	84, 376, 598, 689, 920
Ppu21I	YACGTR	2 cut(s)	1124, 1253
PpuMI	RGGWCCY	1 cut(s)	902
Psp124BI	GAGCTC	1 cut(s)	1812
Psp5II	RGGWCCY	1 cut(s)	902
Psp6I	CCWGG	5 cut(s)	264, 318, 1075, 1402, 1524
PspGI	CCWGG	5 cut(s)	264, 318, 1075, 1402, 1524
PspN4I	GGNNCC	1 cut(s)	826
PspPI	GGNCC	4 cut(s)	360, 902, 1522, 1816
PspPPI	RGGWCCY	1 cut(s)	902
PstI	CTGCAG	2 cut(s)	1456, 2020
PstNI	CAGNNNCTG	1 cut(s)	2222
PsuI	RGATCY	1 cut(s)	2189
RsaI	GTAC	5 cut(s)	317, 629, 669, 849, 1356
RsaNI	GTAC	5 cut(s)	316, 628, 668, 848, 1355
RseI	CAYNNNNRTG	2 cut(s)	650, 1664
SacI	GAGCTC	1 cut(s)	1812
SapI	GCTCTTC	1 cut(s)	629
SaqAI	TTAA	8 cut(s)	681, 729, 1044, 1098, 1494, 1611, 1626, 1770
SatI	GCNGC	9 cut(s)	287, 438, 441, 840, 1452, 1503, 1599, 1915, 2016
Sau96I	GGNCC	4 cut(s)	360, 902, 1522, 1816
SchI	GAGTC	5 cut(s)	84, 376, 599, 689, 921
ScrFI	CCNGG	5 cut(s)	266, 320, 1077, 1404, 1526
SduI	GDGCHC	3 cut(s)	925, 1111, 1812
SexAI	ACCWGGT	1 cut(s)	1402
SfaNI	GCATC	6 cut(s)	232, 445, 996, 1043, 1107, 1575
SfcI	CTRYAG	4 cut(s)	906, 1194, 1452, 2016
SfuI	TTCGAA	1 cut(s)	24
SinI	GGWCC	3 cut(s)	902, 1522, 1816
SmiMI	CAYNNNNRTG	2 cut(s)	650, 1664
SmlI	CTYRAG	3 cut(s)	355, 1043, 1341
SmoI	CTYRAG	3 cut(s)	355, 1043, 1341
SpeI	ACTAGT	1 cut(s)	2003
SphI	GCATGC	1 cut(s)	2126
SseBI	AGGCCT	1 cut(s)	2137
SspMI	CTAG	6 cut(s)	1136, 1272, 1533, 2004, 2292, 2304
SstI	GAGCTC	1 cut(s)	1812
StuI	AGGCCT	1 cut(s)	2137
StyD4I	CCNGG	5 cut(s)	264, 318, 1075, 1402, 1524
StyI	CCWWGG	5 cut(s)	297, 444, 567, 671, 1168
TaaI	ACNGT	8 cut(s)	197, 765, 1306, 1421, 1752, 2111, 2209, 2336
TaiI	ACGT	4 cut(s)	99, 1126, 1255, 1855
TatI	WGTACW	2 cut(s)	847, 1354
TauI	GCSGC	4 cut(s)	289, 440, 842, 1917
TfiI	GAWTC	7 cut(s)	21, 259, 416, 476, 1839, 1856, 1973
Tru1I	TTAA	8 cut(s)	681, 729, 1044, 1098, 1494, 1611, 1626, 1770
Tru9I	TTAA	8 cut(s)	681, 729, 1044, 1098, 1494, 1611, 1626, 1770
TscAI	CASTG	6 cut(s)	770, 1116, 1311, 1461, 1924, 2235
TseFI	GTSAC	1 cut(s)	218
TseI	GCWGC	5 cut(s)	440, 1451, 1502, 1598, 2015
Tsp45I	GTSAC	1 cut(s)	218
TspDTI	ATGAA	8 cut(s)	238, 734, 759, 1340, 1499, 1664, 1841, 2067
TspGWI	ACGGA	2 cut(s)	980, 2297
TspRI	CASTG	6 cut(s)	770, 1116, 1311, 1461, 1924, 2235
Van91I	CCANNNNNTGG	1 cut(s)	871
Vha464I	CTTAAG	1 cut(s)	1043
VneI	GTGCAC	1 cut(s)	921
VpaK11BI	GGWCC	3 cut(s)	902, 1522, 1816
XapI	RAATTY	4 cut(s)	968, 1278, 2251, 2263
XbaI	TCTAGA	1 cut(s)	2291
XceI	RCATGY	3 cut(s)	1669, 1673, 2126
XcmI	CCANNNNNNNNNTGG	1 cut(s)	382
XspI	CTAG	6 cut(s)	1136, 1272, 1533, 2004, 2292, 2304
Zsp2I	ATGCAT	1 cut(s)	1671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.