Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0010856

Physical Location & Seq

Genomic Coordinates Forward (+)

5125772 .. 5129642

Gene Structure 3871 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g05750.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGCGGCGTTGGGAGCAAGAGGGGGCGGACTGGTGCTGCCAAAGCCGGTGACTTTCGTGACTGGAAACGCCAAGAAGCTCGAAGAAGTGCGCGCCATCTTGGGCAACTCCATACCCTTCAACTCCCTCAAGCTCGACTTGCCGGAATTGCAAGGGGAGCCTGAGGACATCTCCAAAGAGAAGGCTAGGTTGGCTGCCCTTCAGGTTAATGGTCCTGTGCTTGTGGAAGACACTTGCCTCTGCTTCAATGCCCTCAAGGGTCTTCCTGCAAGTGGTTCCTGCAGAAGATTGGACATGAAGGACTCAACAATATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009141 GO:0009143 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0018130 GO:0019438 GO:0019439 GO:0019637 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046434 GO:0046483 GO:0046700 GO:0047429 GO:0055086 GO:0071704 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00983 ko01100 map00230 map00983 map01100

Pfam Domains

Protein Families

Ham1p_like

Protein Analysis

106

Amino Acids

11.09

Weight (kDa)

7.63

Isoelectric Point (pI)

44.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ham1p_like	PF01725	17 - 95	3.2e-17	Ham1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0010856)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13720 AT4G13720
fragaria_vesca	FvH4_4g05750
malus_domestica	MD13G1230900.v1.1
prunus_persica	Prupe.1G060800_v2.0.a1
pyrus_communis	pycom13g20350
rosa_chinensis	RchiOBHm_Chr4g0396911
rosa_laevigata	RLG00000009490 RLG00000027037
rosa_multiflora	Rmu_sc0004788.1_g000001 Rmu_sc0008929.1_g000013 Rmu_sc0038532.1_g000001
rosa_roxburghii	Rroxscaffold_5G00341830
rosa_rugosa	Rorug03G0346100
rosa_samantha	Rh4AG075200 Rh4BG071600 Rh4CG079900 Rh4CG295600 Rh4DG069000
rosa_wichuraiana	Rw4G006030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	93
AciI	CCGC	2 cut(s)	5, 27
AcuI	CTGAAG	1 cut(s)	185
AfiI	CCNNNNNNNGG	1 cut(s)	272
AgsI	TTSAA	2 cut(s)	121, 247
AjuI	GAANNNNNNNTTGG	2 cut(s)	173, 205
AluBI	AGCT	2 cut(s)	79, 133
AluI	AGCT	2 cut(s)	79, 133
ApeKI	GCWGC	2 cut(s)	37, 194
AspLEI	GCGC	2 cut(s)	93, 95
AspS9I	GGNCC	1 cut(s)	212
AsuHPI	GGTGA	1 cut(s)	61
AvaII	GGWCC	1 cut(s)	212
AxyI	CCTNAGG	1 cut(s)	162
BbsI	GAAGAC	2 cut(s)	234, 254
BbvI	GCAGC	2 cut(s)	24, 181
BccI	CCATC	1 cut(s)	104
BfaI	CTAG	1 cut(s)	186
BfmI	CTRYAG	1 cut(s)	280
BisI	GCNGC	3 cut(s)	6, 38, 195
BlsI	GCNGC	3 cut(s)	7, 39, 196
Bme18I	GGWCC	1 cut(s)	212
BmgT120I	GGNCC	1 cut(s)	212
BmiI	GGNNCC	2 cut(s)	159, 277
BpiI	GAAGAC	2 cut(s)	234, 254
BplI	GAGNNNNNCTC	2 cut(s)	155, 187
BpuEI	CTTGAG	2 cut(s)	113, 239
Bsc4I	CCNNNNNNNGG	1 cut(s)	272
Bse118I	RCCGGY	1 cut(s)	46
Bse1I	ACTGG	2 cut(s)	36, 67
Bse21I	CCTNAGG	1 cut(s)	162
BseLI	CCNNNNNNNGG	1 cut(s)	272
BseMII	CTCAG	1 cut(s)	153
BseNI	ACTGG	2 cut(s)	36, 67
BsePI	GCGCGC	1 cut(s)	91
BseXI	GCAGC	2 cut(s)	24, 181
Bsh1236I	CGCG	1 cut(s)	93
BsiSI	CCGG	2 cut(s)	47, 143
BslI	CCNNNNNNNGG	1 cut(s)	272
BspACI	CCGC	2 cut(s)	5, 27
BspCNI	CTCAG	1 cut(s)	154
BspFNI	CGCG	1 cut(s)	93
BspLI	GGNNCC	2 cut(s)	159, 277
BspMAI	CTGCAG	1 cut(s)	284
BsrFI	RCCGGY	1 cut(s)	46
BsrI	ACTGG	2 cut(s)	36, 67
BssAI	RCCGGY	1 cut(s)	46
BssHII	GCGCGC	1 cut(s)	91
BstC8I	GCNNGC	1 cut(s)	93
BstDEI	CTNAG	1 cut(s)	162
BstFNI	CGCG	1 cut(s)	93
BstHHI	GCGC	2 cut(s)	93, 95
BstMWI	GCNNNNNNNGC	6 cut(s)	14, 43, 139, 148, 157, 191
BstSFI	CTRYAG	1 cut(s)	280
BstUI	CGCG	1 cut(s)	93
BstV1I	GCAGC	2 cut(s)	24, 181
BstV2I	GAAGAC	2 cut(s)	234, 254
Bsu36I	CCTNAGG	1 cut(s)	162
Cac8I	GCNNGC	1 cut(s)	93
CfoI	GCGC	2 cut(s)	93, 95
Cfr10I	RCCGGY	1 cut(s)	46
Cfr13I	GGNCC	1 cut(s)	212
CviAII	CATG	1 cut(s)	295
CviJI	RGCY	6 cut(s)	46, 79, 133, 160, 185, 194
CviKI_1	RGCY	6 cut(s)	46, 79, 133, 160, 185, 194
DdeI	CTNAG	1 cut(s)	162
EciI	GGCGGA	1 cut(s)	42
Eco47I	GGWCC	1 cut(s)	212
Eco57I	CTGAAG	1 cut(s)	185
Eco81I	CCTNAGG	1 cut(s)	162
FaeI	CATG	1 cut(s)	298
FaiI	YATR	3 cut(s)	113, 296, 313
FalI	AAGNNNNNCTT	2 cut(s)	122, 154
FatI	CATG	1 cut(s)	294
Fnu4HI	GCNGC	3 cut(s)	6, 38, 195
Fsp4HI	GCNGC	3 cut(s)	6, 38, 195
FspBI	CTAG	1 cut(s)	186
GlaI	GCGC	2 cut(s)	92, 94
GluI	GCNGC	3 cut(s)	6, 38, 195
HapII	CCGG	2 cut(s)	47, 143
HhaI	GCGC	2 cut(s)	93, 95
Hin1II	CATG	1 cut(s)	298
Hin6I	GCGC	2 cut(s)	91, 93
HinP1I	GCGC	2 cut(s)	91, 93
HinfI	GANTC	1 cut(s)	302
HpaII	CCGG	2 cut(s)	47, 143
HphI	GGTGA	1 cut(s)	61
Hpy188III	TCNNGA	1 cut(s)	58
HpyAV	CCTTC	4 cut(s)	127, 175, 209, 292
HpyCH4V	TGCA	3 cut(s)	151, 269, 282
HpyF10VI	GCNNNNNNNGC	6 cut(s)	14, 43, 139, 148, 157, 191
HpyF3I	CTNAG	1 cut(s)	162
Hsp92II	CATG	1 cut(s)	298
HspAI	GCGC	2 cut(s)	91, 93
LmnI	GCTCC	2 cut(s)	14, 157
LpnPI	CCDG	9 cut(s)	17, 48, 60, 156, 174, 188, 228, 279, 292
Lsp1109I	GCAGC	2 cut(s)	24, 181
MaeI	CTAG	1 cut(s)	186
MaeIII	GTNAC	2 cut(s)	49, 58
MboII	GAAGA	4 cut(s)	95, 239, 254, 297
MluCI	AATT	1 cut(s)	146
MlyI	GAGTC	1 cut(s)	296
MnlI	CCTC	5 cut(s)	14, 137, 157, 248, 263
MseI	TTAA	1 cut(s)	207
MspI	CCGG	2 cut(s)	47, 143
MvnI	CGCG	1 cut(s)	93
MwoI	GCNNNNNNNGC	6 cut(s)	14, 43, 139, 148, 157, 191
NlaIII	CATG	1 cut(s)	298
NlaIV	GGNNCC	2 cut(s)	159, 277
NmuCI	GTSAC	2 cut(s)	49, 58
PauI	GCGCGC	1 cut(s)	91
PkrI	GCNGC	3 cut(s)	7, 39, 196
PleI	GAGTC	1 cut(s)	296
PpsI	GAGTC	1 cut(s)	296
PspN4I	GGNNCC	2 cut(s)	159, 277
PspPI	GGNCC	1 cut(s)	212
PstI	CTGCAG	1 cut(s)	284
PteI	GCGCGC	1 cut(s)	91
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	3 cut(s)	6, 38, 195
Sau96I	GGNCC	1 cut(s)	212
SchI	GAGTC	1 cut(s)	296
SetI	ASST	4 cut(s)	81, 135, 191, 207
SfcI	CTRYAG	1 cut(s)	280
SinI	GGWCC	1 cut(s)	212
SmlI	CTYRAG	2 cut(s)	128, 254
SmoI	CTYRAG	2 cut(s)	128, 254
Sse9I	AATT	1 cut(s)	146
SsiI	CCGC	2 cut(s)	5, 27
SspMI	CTAG	1 cut(s)	186
TaqI	TCGA	2 cut(s)	81, 135
TasI	AATT	1 cut(s)	146
TauI	GCSGC	1 cut(s)	8
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TseFI	GTSAC	2 cut(s)	49, 58
TseI	GCWGC	2 cut(s)	37, 194
Tsp45I	GTSAC	2 cut(s)	49, 58
TspDTI	ATGAA	1 cut(s)	311
VpaK11BI	GGWCC	1 cut(s)	212
XspI	CTAG	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.