Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0010856

Physical Location & Seq

Genomic Coordinates Forward (+)

12645247 .. 12649224

Gene Structure 3978 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG071600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGTCCTGTGCTTGTGGAAGACACTTGCCTCTGCTTCAATGCCCTCAAGGGTCTACCTGGGCCTTACATGTAAGTTTTTCATCTTGCTTGCTCTCACCAGCAAGTGGTTCCTGCAGAAGATTGGACATGAAGGTCTCAACAATATGTTGATGGCATATGAGGATAAATCTGCATATGCTTTGTGCTCCTTTTCTTTCGCCATTGGGCCCAATGCTGAGCCTATTGCATTTCTGGGTAAAACTCCGGGGAAAATAGTTCCTGCAAGGGGACCAAATGATTTTGGATGGGATCCAATATTTCAACCTGATGATTACGAGCAAACTTATGCCGAGATGTCAAAGGAAGAAAAGAACAAGATTTCTCATCGCTCTAGAGCTCTTGCACTAGTGAAGTCTCACTTTGCTGAAGCTGCATACACTTTTGAGACCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009141 GO:0009143 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0018130 GO:0019438 GO:0019439 GO:0019637 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046434 GO:0046483 GO:0046700 GO:0047429 GO:0055086 GO:0071704 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00983 ko01100 map00230 map00983 map01100

Pfam Domains

Protein Families

Ham1p_like

Protein Analysis

144

Amino Acids

16.17

Weight (kDa)

7.7

Isoelectric Point (pI)

37.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ham1p_like	PF01725	33 - 131	1.2e-27	Ham1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0010856)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13720 AT4G13720
fragaria_vesca	FvH4_4g05750
malus_domestica	MD13G1230900.v1.1
prunus_persica	Prupe.1G060800_v2.0.a1
pyrus_communis	pycom13g20350
rosa_chinensis	RchiOBHm_Chr4g0396911
rosa_laevigata	RLG00000009490 RLG00000027037
rosa_multiflora	Rmu_sc0004788.1_g000001 Rmu_sc0008929.1_g000013 Rmu_sc0038532.1_g000001
rosa_roxburghii	Rroxscaffold_5G00341830
rosa_rugosa	Rorug03G0346100
rosa_samantha	Rh4AG075200 Rh4BG071600 Rh4CG079900 Rh4CG295600 Rh4DG069000
rosa_wichuraiana	Rw4G006030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	132
AccB7I	CCANNNNNTGG	1 cut(s)	105
AccI	GTMKAC	1 cut(s)	54
AclWI	GGATC	2 cut(s)	284, 297
AcuI	CTGAAG	1 cut(s)	426
AfiI	CCNNNNNNNGG	2 cut(s)	105, 266
AflIII	ACRYGT	1 cut(s)	68
AgsI	TTSAA	2 cut(s)	39, 302
AhlI	ACTAGT	1 cut(s)	385
AjnI	CCWGG	1 cut(s)	57
AluBI	AGCT	2 cut(s)	377, 410
AluI	AGCT	2 cut(s)	377, 410
Alw21I	GWGCWC	2 cut(s)	188, 379
Alw26I	GTCTC	3 cut(s)	140, 399, 419
AlwI	GGATC	2 cut(s)	284, 297
AoxI	GGCC	2 cut(s)	61, 206
ApaI	GGGCCC	1 cut(s)	210
ApeKI	GCWGC	1 cut(s)	410
AspS9I	GGNCC	5 cut(s)	4, 61, 206, 207, 269
AsuC2I	CCSGG	1 cut(s)	246
AsuHPI	GGTGA	1 cut(s)	88
AvaII	GGWCC	2 cut(s)	4, 269
BaeGI	GKGCMC	1 cut(s)	210
BamHI	GGATCC	1 cut(s)	289
BanII	GRGCYC	2 cut(s)	210, 379
BbsI	GAAGAC	1 cut(s)	26
Bbv12I	GWGCWC	2 cut(s)	188, 379
BbvI	GCAGC	1 cut(s)	397
BccI	CCATC	2 cut(s)	145, 279
BciT130I	CCWGG	1 cut(s)	59
BcnI	CCSGG	1 cut(s)	246
BcoDI	GTCTC	3 cut(s)	140, 399, 419
BcuI	ACTAGT	1 cut(s)	385
BfaI	CTAG	3 cut(s)	372, 386, 433
BfmI	CTRYAG	1 cut(s)	113
BisI	GCNGC	1 cut(s)	411
BlpI	GCTNAGC	1 cut(s)	216
BlsI	GCNGC	1 cut(s)	412
Bme1390I	CCNGG	2 cut(s)	59, 246
Bme18I	GGWCC	2 cut(s)	4, 269
BmgT120I	GGNCC	5 cut(s)	4, 61, 206, 207, 269
BmiI	GGNNCC	4 cut(s)	110, 208, 270, 291
BmrFI	CCNGG	2 cut(s)	59, 246
BpiI	GAAGAC	1 cut(s)	26
Bpu1102I	GCTNAGC	1 cut(s)	216
BpuEI	CTTGAG	1 cut(s)	31
BpuMI	CCSGG	1 cut(s)	246
BsaI	GGTCTC	2 cut(s)	140, 419
BsaJI	CCNNGG	2 cut(s)	58, 245
Bsc4I	CCNNNNNNNGG	2 cut(s)	105, 266
BseBI	CCWGG	1 cut(s)	59
BseDI	CCNNGG	2 cut(s)	58, 245
BseGI	GGATG	1 cut(s)	290
BseLI	CCNNNNNNNGG	2 cut(s)	105, 266
BseMII	CTCAG	1 cut(s)	207
BseSI	GKGCMC	1 cut(s)	210
BseXI	GCAGC	1 cut(s)	397
BshFI	GGCC	2 cut(s)	63, 208
BsiHKAI	GWGCWC	2 cut(s)	188, 379
BsiSI	CCGG	1 cut(s)	245
BslFI	GGGAC	1 cut(s)	282
BslI	CCNNNNNNNGG	2 cut(s)	105, 266
BsmAI	GTCTC	3 cut(s)	140, 399, 419
BsmFI	GGGAC	1 cut(s)	282
BsnI	GGCC	2 cut(s)	63, 208
Bso31I	GGTCTC	2 cut(s)	140, 419
Bsp120I	GGGCCC	1 cut(s)	206
Bsp1286I	GDGCHC	3 cut(s)	188, 210, 379
Bsp143I	GATC	1 cut(s)	289
Bsp1720I	GCTNAGC	1 cut(s)	216
BspANI	GGCC	2 cut(s)	63, 208
BspCNI	CTCAG	1 cut(s)	208
BspLI	GGNNCC	4 cut(s)	110, 208, 270, 291
BspMAI	CTGCAG	1 cut(s)	117
BspPI	GGATC	2 cut(s)	284, 297
BspTNI	GGTCTC	2 cut(s)	140, 419
BssECI	CCNNGG	2 cut(s)	58, 245
BssMI	GATC	1 cut(s)	289
Bst2UI	CCWGG	1 cut(s)	59
BstC8I	GCNNGC	1 cut(s)	90
BstDEI	CTNAG	1 cut(s)	216
BstF5I	GGATG	1 cut(s)	290
BstKTI	GATC	1 cut(s)	292
BstMAI	GTCTC	3 cut(s)	140, 399, 419
BstMBI	GATC	1 cut(s)	289
BstMWI	GCNNNNNNNGC	1 cut(s)	410
BstNI	CCWGG	1 cut(s)	59
BstNSI	RCATGY	1 cut(s)	72
BstSCI	CCNGG	2 cut(s)	57, 244
BstSFI	CTRYAG	1 cut(s)	113
BstSLI	GKGCMC	1 cut(s)	210
BstV1I	GCAGC	1 cut(s)	397
BstV2I	GAAGAC	1 cut(s)	26
BstX2I	RGATCY	1 cut(s)	289
BstYI	RGATCY	1 cut(s)	289
BsuRI	GGCC	2 cut(s)	63, 208
BtgZI	GCGATG	1 cut(s)	350
BtsCI	GGATG	1 cut(s)	290
Cac8I	GCNNGC	1 cut(s)	90
Cfr13I	GGNCC	5 cut(s)	4, 61, 206, 207, 269
CviAII	CATG	2 cut(s)	69, 128
CviJI	RGCY	5 cut(s)	63, 208, 220, 377, 410
CviKI_1	RGCY	5 cut(s)	63, 208, 220, 377, 410
DdeI	CTNAG	1 cut(s)	216
DpnI	GATC	1 cut(s)	291
DpnII	GATC	1 cut(s)	289
DrdI	GACNNNNNNGTC	1 cut(s)	132
DseDI	GACNNNNNNGTC	1 cut(s)	132
Ecl136II	GAGCTC	1 cut(s)	377
Eco24I	GRGCYC	2 cut(s)	210, 379
Eco31I	GGTCTC	2 cut(s)	140, 419
Eco47I	GGWCC	2 cut(s)	4, 269
Eco53kI	GAGCTC	1 cut(s)	377
Eco57I	CTGAAG	1 cut(s)	426
EcoICRI	GAGCTC	1 cut(s)	377
EcoRII	CCWGG	1 cut(s)	57
EcoT38I	GRGCYC	2 cut(s)	210, 379
FaeI	CATG	2 cut(s)	72, 131
FaiI	YATR	9 cut(s)	70, 129, 146, 157, 159, 175, 177, 327, 415
FalI	AAGNNNNNCTT	2 cut(s)	383, 415
FaqI	GGGAC	1 cut(s)	282
FatI	CATG	2 cut(s)	68, 127
FauNDI	CATATG	2 cut(s)	157, 175
FblI	GTMKAC	1 cut(s)	54
Fnu4HI	GCNGC	1 cut(s)	411
FokI	GGATG	1 cut(s)	297
FriOI	GRGCYC	2 cut(s)	210, 379
Fsp4HI	GCNGC	1 cut(s)	411
FspBI	CTAG	3 cut(s)	372, 386, 433
GluI	GCNGC	1 cut(s)	411
HaeIII	GGCC	2 cut(s)	63, 208
HapII	CCGG	1 cut(s)	245
Hin1II	CATG	2 cut(s)	72, 131
HpaII	CCGG	1 cut(s)	245
HphI	GGTGA	1 cut(s)	88
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188III	TCNNGA	1 cut(s)	372
Hpy8I	GTNNAC	1 cut(s)	55
HpyAV	CCTTC	1 cut(s)	125
HpyCH4V	TGCA	6 cut(s)	115, 173, 227, 263, 383, 413
HpyF10VI	GCNNNNNNNGC	1 cut(s)	410
HpyF3I	CTNAG	1 cut(s)	216
Hsp92II	CATG	2 cut(s)	72, 131
Kzo9I	GATC	1 cut(s)	289
LmnI	GCTCC	1 cut(s)	191
LpnPI	CCDG	9 cut(s)	20, 44, 71, 112, 125, 218, 258, 273, 318
Lsp1109I	GCAGC	1 cut(s)	397
MaeI	CTAG	3 cut(s)	372, 386, 433
MalI	GATC	1 cut(s)	291
MboI	GATC	1 cut(s)	289
MboII	GAAGA	3 cut(s)	31, 130, 356
MflI	RGATCY	1 cut(s)	289
MhlI	GDGCHC	3 cut(s)	188, 210, 379
MnlI	CCTC	3 cut(s)	40, 55, 154
MspI	CCGG	1 cut(s)	245
MspR9I	CCNGG	2 cut(s)	59, 246
MvaI	CCWGG	1 cut(s)	59
MwoI	GCNNNNNNNGC	1 cut(s)	410
NciI	CCSGG	1 cut(s)	246
NdeI	CATATG	2 cut(s)	157, 175
NdeII	GATC	1 cut(s)	289
NlaIII	CATG	2 cut(s)	72, 131
NlaIV	GGNNCC	4 cut(s)	110, 208, 270, 291
NmeAIII	GCCGAG	1 cut(s)	355
NspI	RCATGY	1 cut(s)	72
PciI	ACATGT	1 cut(s)	68
PflMI	CCANNNNNTGG	1 cut(s)	105
PkrI	GCNGC	1 cut(s)	412
PscI	ACATGT	1 cut(s)	68
Psp124BI	GAGCTC	1 cut(s)	379
Psp6I	CCWGG	1 cut(s)	57
PspGI	CCWGG	1 cut(s)	57
PspN4I	GGNNCC	4 cut(s)	110, 208, 270, 291
PspOMI	GGGCCC	1 cut(s)	206
PspPI	GGNCC	5 cut(s)	4, 61, 206, 207, 269
PstI	CTGCAG	1 cut(s)	117
PsuI	RGATCY	1 cut(s)	289
SacI	GAGCTC	1 cut(s)	379
SatI	GCNGC	1 cut(s)	411
Sau3AI	GATC	1 cut(s)	289
Sau96I	GGNCC	5 cut(s)	4, 61, 206, 207, 269
ScrFI	CCNGG	2 cut(s)	59, 246
SduI	GDGCHC	3 cut(s)	188, 210, 379
SetI	ASST	5 cut(s)	60, 136, 307, 379, 412
SfcI	CTRYAG	1 cut(s)	113
SinI	GGWCC	2 cut(s)	4, 269
SmlI	CTYRAG	1 cut(s)	46
SmoI	CTYRAG	1 cut(s)	46
SpeI	ACTAGT	1 cut(s)	385
SspI	AATATT	1 cut(s)	297
SspMI	CTAG	3 cut(s)	372, 386, 433
SstI	GAGCTC	1 cut(s)	379
StyD4I	CCNGG	2 cut(s)	57, 244
TseI	GCWGC	1 cut(s)	410
TspDTI	ATGAA	2 cut(s)	70, 144
Van91I	CCANNNNNTGG	1 cut(s)	105
VpaK11BI	GGWCC	2 cut(s)	4, 269
XbaI	TCTAGA	1 cut(s)	371
XceI	RCATGY	1 cut(s)	72
XmiI	GTMKAC	1 cut(s)	54
XspI	CTAG	3 cut(s)	372, 386, 433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.