Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0010856

Physical Location & Seq

Genomic Coordinates Forward (+)

10238501 .. 10242105

Gene Structure 3605 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG069000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGCGGCGTTGGGAGCAAGAGGAGGTGGACTGGTGCTGCCAAAGCCGGTGACTTTTGTGACCGGAAACGCCAAGAAGCTCGAAGAAGTGCGCGCCATCTTGGGCACCTCCATTCCCTTCAACTCTCTCAAGCTCGATTTGCCAGAATTGCAAGGGGAGCCTGAGGACATCTCCAAAGAAAAGGCTAGGTTGGCTGCCATTCAGGTTAAGGGTCCTGTGCTTGTGGAAGACACTTGCCTCTGCTTCAATGCCCTCAAGGGTCTACCTGGTTACAAGTGGTTCCTGCAGAAGATTGGACATGAAGGTCTCAACAATATGTTGATGGCATATGAGGATAAATCTGCATATGCTTTGTGCTCCTTTTCTTTCGCCATTGGGCCCAATGCTGAGCCTATTGCATTTCTGGGTAAAACTCCGGGGAAAATAGTTCCTGCAAGGGGACCAAATAATTTTGGATGGGATCCAATATTTCAACCTGATGGTTACGAGCAAACTTATGCCGAGATGTCAAAGGAAGAAAAGAACAAGATTTCTCATCGCTCTAGAGCTCTTGCACTAGTGAAGTCTCACTTTGCTGAAGCTGCATACACTTTTGAGACCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009141 GO:0009143 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0018130 GO:0019438 GO:0019439 GO:0019637 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046434 GO:0046483 GO:0046700 GO:0047429 GO:0055086 GO:0071704 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00983 ko01100 map00230 map00983 map01100

Pfam Domains

Protein Families

Ham1p_like

Protein Analysis

201

Amino Acids

21.92

Weight (kDa)

7.68

Isoelectric Point (pI)

32.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ham1p_like	PF01725	17 - 188	9.5e-49	Ham1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010856)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13720 AT4G13720
fragaria_vesca	FvH4_4g05750
malus_domestica	MD13G1230900.v1.1
prunus_persica	Prupe.1G060800_v2.0.a1
pyrus_communis	pycom13g20350
rosa_chinensis	RchiOBHm_Chr4g0396911
rosa_laevigata	RLG00000009490 RLG00000027037
rosa_multiflora	Rmu_sc0004788.1_g000001 Rmu_sc0008929.1_g000013 Rmu_sc0038532.1_g000001
rosa_roxburghii	Rroxscaffold_5G00341830
rosa_rugosa	Rorug03G0346100
rosa_samantha	Rh4AG075200 Rh4BG071600 Rh4CG079900 Rh4CG295600 Rh4DG069000
rosa_wichuraiana	Rw4G006030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	303
AccB1I	GGYRCC	1 cut(s)	104
AccI	GTMKAC	1 cut(s)	262
AccII	CGCG	1 cut(s)	93
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	2 cut(s)	455, 468
AcuI	CTGAAG	1 cut(s)	597
AfiI	CCNNNNNNNGG	1 cut(s)	437
AgsI	TTSAA	3 cut(s)	121, 247, 473
AhlI	ACTAGT	1 cut(s)	556
AjnI	CCWGG	1 cut(s)	265
AluBI	AGCT	4 cut(s)	79, 133, 548, 581
AluI	AGCT	4 cut(s)	79, 133, 548, 581
Alw21I	GWGCWC	2 cut(s)	359, 550
Alw26I	GTCTC	3 cut(s)	311, 570, 590
AlwI	GGATC	2 cut(s)	455, 468
AoxI	GGCC	1 cut(s)	377
ApaI	GGGCCC	1 cut(s)	381
ApeKI	GCWGC	3 cut(s)	37, 194, 581
AspLEI	GCGC	2 cut(s)	93, 95
AspS9I	GGNCC	4 cut(s)	212, 377, 378, 440
AsuC2I	CCSGG	1 cut(s)	417
AsuHPI	GGTGA	1 cut(s)	61
AvaII	GGWCC	2 cut(s)	212, 440
AxyI	CCTNAGG	1 cut(s)	162
BaeGI	GKGCMC	2 cut(s)	107, 381
BamHI	GGATCC	1 cut(s)	460
BanI	GGYRCC	1 cut(s)	104
BanII	GRGCYC	2 cut(s)	381, 550
BbsI	GAAGAC	1 cut(s)	234
Bbv12I	GWGCWC	2 cut(s)	359, 550
BbvI	GCAGC	3 cut(s)	24, 181, 568
BccI	CCATC	4 cut(s)	104, 316, 450, 473
BciT130I	CCWGG	1 cut(s)	267
BcnI	CCSGG	1 cut(s)	417
BcoDI	GTCTC	3 cut(s)	311, 570, 590
BcuI	ACTAGT	1 cut(s)	556
BfaI	CTAG	4 cut(s)	186, 543, 557, 604
BfmI	CTRYAG	1 cut(s)	284
BisI	GCNGC	4 cut(s)	6, 38, 195, 582
BlpI	GCTNAGC	1 cut(s)	387
BlsI	GCNGC	4 cut(s)	7, 39, 196, 583
Bme1390I	CCNGG	2 cut(s)	267, 417
Bme18I	GGWCC	2 cut(s)	212, 440
BmgT120I	GGNCC	4 cut(s)	212, 377, 378, 440
BmiI	GGNNCC	7 cut(s)	106, 159, 213, 281, 379, 441, 462
BmrFI	CCNGG	2 cut(s)	267, 417
BpiI	GAAGAC	1 cut(s)	234
BplI	GAGNNNNNCTC	2 cut(s)	155, 187
Bpu1102I	GCTNAGC	1 cut(s)	387
BpuEI	CTTGAG	2 cut(s)	113, 239
BpuMI	CCSGG	1 cut(s)	417
BsaI	GGTCTC	2 cut(s)	311, 590
BsaJI	CCNNGG	1 cut(s)	416
BsaWI	WCCGGW	1 cut(s)	62
Bsc4I	CCNNNNNNNGG	1 cut(s)	437
Bse118I	RCCGGY	1 cut(s)	46
Bse1I	ACTGG	1 cut(s)	36
Bse21I	CCTNAGG	1 cut(s)	162
BseBI	CCWGG	1 cut(s)	267
BseDI	CCNNGG	1 cut(s)	416
BseGI	GGATG	1 cut(s)	461
BseLI	CCNNNNNNNGG	1 cut(s)	437
BseMII	CTCAG	2 cut(s)	153, 378
BseNI	ACTGG	1 cut(s)	36
BsePI	GCGCGC	1 cut(s)	91
BseRI	GAGGAG	1 cut(s)	36
BseSI	GKGCMC	2 cut(s)	107, 381
BseXI	GCAGC	3 cut(s)	24, 181, 568
Bsh1236I	CGCG	1 cut(s)	93
BshFI	GGCC	1 cut(s)	379
BshNI	GGYRCC	1 cut(s)	104
BsiHKAI	GWGCWC	2 cut(s)	359, 550
BsiSI	CCGG	3 cut(s)	47, 63, 416
BslFI	GGGAC	1 cut(s)	453
BslI	CCNNNNNNNGG	1 cut(s)	437
BsmAI	GTCTC	3 cut(s)	311, 570, 590
BsmFI	GGGAC	1 cut(s)	453
BsnI	GGCC	1 cut(s)	379
Bso31I	GGTCTC	2 cut(s)	311, 590
Bsp120I	GGGCCC	1 cut(s)	377
Bsp1286I	GDGCHC	4 cut(s)	107, 359, 381, 550
Bsp143I	GATC	1 cut(s)	460
Bsp1720I	GCTNAGC	1 cut(s)	387
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	1 cut(s)	379
BspCNI	CTCAG	2 cut(s)	154, 379
BspFNI	CGCG	1 cut(s)	93
BspLI	GGNNCC	7 cut(s)	106, 159, 213, 281, 379, 441, 462
BspMAI	CTGCAG	1 cut(s)	288
BspPI	GGATC	2 cut(s)	455, 468
BspT107I	GGYRCC	1 cut(s)	104
BspTNI	GGTCTC	2 cut(s)	311, 590
BsrFI	RCCGGY	1 cut(s)	46
BsrI	ACTGG	1 cut(s)	36
BssAI	RCCGGY	1 cut(s)	46
BssECI	CCNNGG	1 cut(s)	416
BssHII	GCGCGC	1 cut(s)	91
BssMI	GATC	1 cut(s)	460
Bst2UI	CCWGG	1 cut(s)	267
BstC8I	GCNNGC	1 cut(s)	93
BstDEI	CTNAG	2 cut(s)	162, 387
BstF5I	GGATG	1 cut(s)	461
BstFNI	CGCG	1 cut(s)	93
BstHHI	GCGC	2 cut(s)	93, 95
BstKTI	GATC	1 cut(s)	463
BstMAI	GTCTC	3 cut(s)	311, 570, 590
BstMBI	GATC	1 cut(s)	460
BstMWI	GCNNNNNNNGC	7 cut(s)	14, 43, 139, 148, 157, 191, 581
BstNI	CCWGG	1 cut(s)	267
BstSCI	CCNGG	2 cut(s)	265, 415
BstSFI	CTRYAG	1 cut(s)	284
BstSLI	GKGCMC	2 cut(s)	107, 381
BstUI	CGCG	1 cut(s)	93
BstV1I	GCAGC	3 cut(s)	24, 181, 568
BstV2I	GAAGAC	1 cut(s)	234
BstX2I	RGATCY	1 cut(s)	460
BstYI	RGATCY	1 cut(s)	460
Bsu36I	CCTNAGG	1 cut(s)	162
BsuRI	GGCC	1 cut(s)	379
BtgZI	GCGATG	1 cut(s)	521
BtsCI	GGATG	1 cut(s)	461
Cac8I	GCNNGC	1 cut(s)	93
CfoI	GCGC	2 cut(s)	93, 95
Cfr10I	RCCGGY	1 cut(s)	46
Cfr13I	GGNCC	4 cut(s)	212, 377, 378, 440
CsiI	ACCWGGT	1 cut(s)	265
CviAII	CATG	1 cut(s)	299
DdeI	CTNAG	2 cut(s)	162, 387
DpnI	GATC	1 cut(s)	462
DpnII	GATC	1 cut(s)	460
DrdI	GACNNNNNNGTC	1 cut(s)	303
DseDI	GACNNNNNNGTC	1 cut(s)	303
Ecl136II	GAGCTC	1 cut(s)	548
Eco24I	GRGCYC	2 cut(s)	381, 550
Eco31I	GGTCTC	2 cut(s)	311, 590
Eco47I	GGWCC	2 cut(s)	212, 440
Eco53kI	GAGCTC	1 cut(s)	548
Eco57I	CTGAAG	1 cut(s)	597
Eco81I	CCTNAGG	1 cut(s)	162
EcoICRI	GAGCTC	1 cut(s)	548
EcoO109I	RGGNCCY	1 cut(s)	212
EcoRII	CCWGG	1 cut(s)	265
EcoT38I	GRGCYC	2 cut(s)	381, 550
FaeI	CATG	1 cut(s)	302
FaiI	YATR	8 cut(s)	300, 317, 328, 330, 346, 348, 498, 586
FalI	AAGNNNNNCTT	2 cut(s)	554, 586
FaqI	GGGAC	1 cut(s)	453
FatI	CATG	1 cut(s)	298
FauNDI	CATATG	2 cut(s)	328, 346
FblI	GTMKAC	1 cut(s)	262
Fnu4HI	GCNGC	4 cut(s)	6, 38, 195, 582
FokI	GGATG	1 cut(s)	468
FriOI	GRGCYC	2 cut(s)	381, 550
Fsp4HI	GCNGC	4 cut(s)	6, 38, 195, 582
FspBI	CTAG	4 cut(s)	186, 543, 557, 604
GlaI	GCGC	2 cut(s)	92, 94
GluI	GCNGC	4 cut(s)	6, 38, 195, 582
HaeIII	GGCC	1 cut(s)	379
HapII	CCGG	3 cut(s)	47, 63, 416
HhaI	GCGC	2 cut(s)	93, 95
Hin1II	CATG	1 cut(s)	302
Hin6I	GCGC	2 cut(s)	91, 93
HinP1I	GCGC	2 cut(s)	91, 93
HpaII	CCGG	3 cut(s)	47, 63, 416
HphI	GGTGA	1 cut(s)	61
Hpy166II	GTNNAC	2 cut(s)	29, 263
Hpy188III	TCNNGA	1 cut(s)	543
Hpy8I	GTNNAC	2 cut(s)	29, 263
HpyAV	CCTTC	2 cut(s)	127, 296
HpyCH4V	TGCA	7 cut(s)	151, 286, 344, 398, 434, 554, 584
HpyF10VI	GCNNNNNNNGC	7 cut(s)	14, 43, 139, 148, 157, 191, 581
HpyF3I	CTNAG	2 cut(s)	162, 387
Hsp92II	CATG	1 cut(s)	302
HspAI	GCGC	2 cut(s)	91, 93
Kzo9I	GATC	1 cut(s)	460
LmnI	GCTCC	3 cut(s)	14, 157, 362
Lsp1109I	GCAGC	3 cut(s)	24, 181, 568
MabI	ACCWGGT	1 cut(s)	265
MaeI	CTAG	4 cut(s)	186, 543, 557, 604
MaeIII	GTNAC	4 cut(s)	49, 58, 269, 482
MalI	GATC	1 cut(s)	462
MboI	GATC	1 cut(s)	460
MboII	GAAGA	4 cut(s)	95, 239, 301, 527
MflI	RGATCY	1 cut(s)	460
MhlI	GDGCHC	4 cut(s)	107, 359, 381, 550
MluCI	AATT	2 cut(s)	146, 448
MnlI	CCTC	7 cut(s)	14, 17, 118, 157, 248, 263, 325
MseI	TTAA	1 cut(s)	207
MspI	CCGG	3 cut(s)	47, 63, 416
MspR9I	CCNGG	2 cut(s)	267, 417
MvaI	CCWGG	1 cut(s)	267
MvnI	CGCG	1 cut(s)	93
MwoI	GCNNNNNNNGC	7 cut(s)	14, 43, 139, 148, 157, 191, 581
NciI	CCSGG	1 cut(s)	417
NdeI	CATATG	2 cut(s)	328, 346
NdeII	GATC	1 cut(s)	460
NlaIII	CATG	1 cut(s)	302
NlaIV	GGNNCC	7 cut(s)	106, 159, 213, 281, 379, 441, 462
NmeAIII	GCCGAG	1 cut(s)	526
NmuCI	GTSAC	2 cut(s)	49, 58
PauI	GCGCGC	1 cut(s)	91
PkrI	GCNGC	4 cut(s)	7, 39, 196, 583
PpuMI	RGGWCCY	1 cut(s)	212
Psp124BI	GAGCTC	1 cut(s)	550
Psp5II	RGGWCCY	1 cut(s)	212
Psp6I	CCWGG	1 cut(s)	265
PspGI	CCWGG	1 cut(s)	265
PspN4I	GGNNCC	7 cut(s)	106, 159, 213, 281, 379, 441, 462
PspOMI	GGGCCC	1 cut(s)	377
PspPI	GGNCC	4 cut(s)	212, 377, 378, 440
PspPPI	RGGWCCY	1 cut(s)	212
PstI	CTGCAG	1 cut(s)	288
PsuI	RGATCY	1 cut(s)	460
PteI	GCGCGC	1 cut(s)	91
SacI	GAGCTC	1 cut(s)	550
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	4 cut(s)	6, 38, 195, 582
Sau3AI	GATC	1 cut(s)	460
Sau96I	GGNCC	4 cut(s)	212, 377, 378, 440
ScrFI	CCNGG	2 cut(s)	267, 417
SduI	GDGCHC	4 cut(s)	107, 359, 381, 550
SexAI	ACCWGGT	1 cut(s)	265
SfcI	CTRYAG	1 cut(s)	284
SinI	GGWCC	2 cut(s)	212, 440
SmlI	CTYRAG	2 cut(s)	128, 254
SmoI	CTYRAG	2 cut(s)	128, 254
SpeI	ACTAGT	1 cut(s)	556
Sse9I	AATT	2 cut(s)	146, 448
SsiI	CCGC	1 cut(s)	5
SspI	AATATT	1 cut(s)	468
SspMI	CTAG	4 cut(s)	186, 543, 557, 604
SstI	GAGCTC	1 cut(s)	550
StyD4I	CCNGG	2 cut(s)	265, 415
TaqI	TCGA	2 cut(s)	81, 135
TasI	AATT	2 cut(s)	146, 448
TauI	GCSGC	1 cut(s)	8
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TseFI	GTSAC	2 cut(s)	49, 58
TseI	GCWGC	3 cut(s)	37, 194, 581
Tsp45I	GTSAC	2 cut(s)	49, 58
TspDTI	ATGAA	1 cut(s)	315
VpaK11BI	GGWCC	2 cut(s)	212, 440
XbaI	TCTAGA	1 cut(s)	542
XmiI	GTMKAC	1 cut(s)	262
XspI	CTAG	4 cut(s)	186, 543, 557, 604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.