Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0010856

Physical Location & Seq

Genomic Coordinates Forward (+)

22873802 .. 22875430

Gene Structure 1629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1230900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGTGGTGTTTCTTTAACAGTCTTACTGATTCTTTACAATTTTGCAGTAAGTGGTTCCTGCAGAAGCTTGGACATGAAGGTCTCAATAATTTGTTGATGGCATATGAGGATAAATCAGCTTATGCATTGTGTTCCTTCTCCTTTACCACTGGGCCCAGTGTTGAGCCTATCACATTTCTGGGTAAAACTCCGGGGAGAATAGTTCCGGCAAGGGGACCAACTGATTTCGGATGGGATCCAGTCTTCCAACCTGATGGTTACGAGCAGACTTATGCCGAGATGCCGAAGGAAGAAAAGAACAAGATTTCTCATCGCTTTAGAGCTCTTGCACTGGTGAAGTCTCACTTTGCTGAAGCTGGGTACACCTTTGAGACAAACTGTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009141 GO:0009143 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0018130 GO:0019438 GO:0019439 GO:0019637 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046434 GO:0046483 GO:0046700 GO:0047429 GO:0055086 GO:0071704 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00983 ko01100 map00230 map00983 map01100

Pfam Domains

Protein Families

Ham1p_like

Protein Analysis

129

Amino Acids

14.55

Weight (kDa)

5.88

Isoelectric Point (pI)

31.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ham1p_like	PF01725	5 - 113	2.8e-27	Ham1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0010856)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13720 AT4G13720
fragaria_vesca	FvH4_4g05750
malus_domestica	MD13G1230900.v1.1
prunus_persica	Prupe.1G060800_v2.0.a1
pyrus_communis	pycom13g20350
rosa_chinensis	RchiOBHm_Chr4g0396911
rosa_laevigata	RLG00000009490 RLG00000027037
rosa_multiflora	Rmu_sc0004788.1_g000001 Rmu_sc0008929.1_g000013 Rmu_sc0038532.1_g000001
rosa_roxburghii	Rroxscaffold_5G00341830
rosa_rugosa	Rorug03G0346100
rosa_samantha	Rh4AG075200 Rh4BG071600 Rh4CG079900 Rh4CG295600 Rh4DG069000
rosa_wichuraiana	Rw4G006030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	78
AclWI	GGATC	2 cut(s)	230, 243
AcuI	CTGAAG	1 cut(s)	372
AfaI	GTAC	1 cut(s)	362
AfiI	CCNNNNNNNGG	1 cut(s)	212
AluBI	AGCT	4 cut(s)	67, 119, 323, 356
AluI	AGCT	4 cut(s)	67, 119, 323, 356
Alw21I	GWGCWC	1 cut(s)	325
Alw26I	GTCTC	3 cut(s)	86, 345, 365
AlwI	GGATC	2 cut(s)	230, 243
AoxI	GGCC	1 cut(s)	152
ApaI	GGGCCC	1 cut(s)	156
AspS9I	GGNCC	3 cut(s)	152, 153, 215
AsuC2I	CCSGG	1 cut(s)	192
AsuHPI	GGTGA	1 cut(s)	346
AvaII	GGWCC	1 cut(s)	215
BaeGI	GKGCMC	1 cut(s)	156
BamHI	GGATCC	1 cut(s)	235
BanII	GRGCYC	2 cut(s)	156, 325
BbsI	GAAGAC	1 cut(s)	235
Bbv12I	GWGCWC	1 cut(s)	325
BccI	CCATC	3 cut(s)	91, 225, 248
BcnI	CCSGG	1 cut(s)	192
BcoDI	GTCTC	3 cut(s)	86, 345, 365
BfmI	CTRYAG	1 cut(s)	59
Bme1390I	CCNGG	1 cut(s)	192
Bme18I	GGWCC	1 cut(s)	215
BmgT120I	GGNCC	3 cut(s)	152, 153, 215
BmiI	GGNNCC	4 cut(s)	56, 154, 216, 237
BmrFI	CCNGG	1 cut(s)	192
BmrI	ACTGGG	2 cut(s)	150, 159
BmsI	GCATC	1 cut(s)	270
BmuI	ACTGGG	2 cut(s)	150, 159
BpiI	GAAGAC	1 cut(s)	235
BpuMI	CCSGG	1 cut(s)	192
BsaI	GGTCTC	1 cut(s)	86
BsaJI	CCNNGG	1 cut(s)	191
Bsc4I	CCNNNNNNNGG	1 cut(s)	212
Bse1I	ACTGG	4 cut(s)	154, 156, 239, 336
BseDI	CCNNGG	1 cut(s)	191
BseGI	GGATG	1 cut(s)	236
BseLI	CCNNNNNNNGG	1 cut(s)	212
BseNI	ACTGG	4 cut(s)	154, 156, 239, 336
BseSI	GKGCMC	1 cut(s)	156
BseYI	CCCAGC	1 cut(s)	356
BshFI	GGCC	1 cut(s)	154
BsiHKAI	GWGCWC	1 cut(s)	325
BsiSI	CCGG	2 cut(s)	191, 206
BslFI	GGGAC	1 cut(s)	228
BslI	CCNNNNNNNGG	1 cut(s)	212
BsmAI	GTCTC	3 cut(s)	86, 345, 365
BsmFI	GGGAC	1 cut(s)	228
BsnI	GGCC	1 cut(s)	154
Bso31I	GGTCTC	1 cut(s)	86
Bsp120I	GGGCCC	1 cut(s)	152
Bsp1286I	GDGCHC	2 cut(s)	156, 325
Bsp143I	GATC	1 cut(s)	235
BspANI	GGCC	1 cut(s)	154
BspLI	GGNNCC	4 cut(s)	56, 154, 216, 237
BspMAI	CTGCAG	1 cut(s)	63
BspPI	GGATC	2 cut(s)	230, 243
BspTNI	GGTCTC	1 cut(s)	86
BsrI	ACTGG	4 cut(s)	154, 156, 239, 336
BssECI	CCNNGG	1 cut(s)	191
BssMI	GATC	1 cut(s)	235
Bst4CI	ACNGT	2 cut(s)	20, 380
BstF5I	GGATG	1 cut(s)	236
BstKTI	GATC	1 cut(s)	238
BstMAI	GTCTC	3 cut(s)	86, 345, 365
BstMBI	GATC	1 cut(s)	235
BstSCI	CCNGG	1 cut(s)	190
BstSFI	CTRYAG	1 cut(s)	59
BstSLI	GKGCMC	1 cut(s)	156
BstV2I	GAAGAC	1 cut(s)	235
BstX2I	RGATCY	1 cut(s)	235
BstXI	CCANNNNNNTGG	1 cut(s)	254
BstYI	RGATCY	1 cut(s)	235
BsuRI	GGCC	1 cut(s)	154
BtgZI	GCGATG	1 cut(s)	296
BtsCI	GGATG	1 cut(s)	236
BtsIMutI	CAGTG	3 cut(s)	147, 163, 329
Cfr13I	GGNCC	3 cut(s)	152, 153, 215
Csp6I	GTAC	1 cut(s)	361
CviAII	CATG	1 cut(s)	74
CviJI	RGCY	6 cut(s)	67, 119, 154, 166, 323, 356
CviKI_1	RGCY	6 cut(s)	67, 119, 154, 166, 323, 356
CviQI	GTAC	1 cut(s)	361
DpnI	GATC	1 cut(s)	237
DpnII	GATC	1 cut(s)	235
DrdI	GACNNNNNNGTC	1 cut(s)	78
DseDI	GACNNNNNNGTC	1 cut(s)	78
Ecl136II	GAGCTC	1 cut(s)	323
Eco24I	GRGCYC	2 cut(s)	156, 325
Eco31I	GGTCTC	1 cut(s)	86
Eco47I	GGWCC	1 cut(s)	215
Eco53kI	GAGCTC	1 cut(s)	323
Eco57I	CTGAAG	1 cut(s)	372
EcoICRI	GAGCTC	1 cut(s)	323
EcoT22I	ATGCAT	1 cut(s)	127
EcoT38I	GRGCYC	2 cut(s)	156, 325
FaeI	CATG	1 cut(s)	77
FaiI	YATR	5 cut(s)	75, 103, 105, 123, 273
FalI	AAGNNNNNCTT	2 cut(s)	329, 361
FaqI	GGGAC	1 cut(s)	228
FatI	CATG	1 cut(s)	73
FauNDI	CATATG	1 cut(s)	103
FokI	GGATG	1 cut(s)	243
FriOI	GRGCYC	2 cut(s)	156, 325
GsaI	CCCAGC	1 cut(s)	360
HaeIII	GGCC	1 cut(s)	154
HapII	CCGG	2 cut(s)	191, 206
Hin1II	CATG	1 cut(s)	77
HindIII	AAGCTT	1 cut(s)	65
HinfI	GANTC	1 cut(s)	29
HpaII	CCGG	2 cut(s)	191, 206
HphI	GGTGA	1 cut(s)	346
Hpy166II	GTNNAC	1 cut(s)	363
Hpy188I	TCNGA	1 cut(s)	230
Hpy8I	GTNNAC	1 cut(s)	363
HpyAV	CCTTC	3 cut(s)	71, 145, 280
HpyCH4III	ACNGT	2 cut(s)	20, 380
HpyCH4V	TGCA	4 cut(s)	45, 61, 125, 329
Hsp92II	CATG	1 cut(s)	77
Kzo9I	GATC	1 cut(s)	235
LweI	GCATC	1 cut(s)	270
MaeIII	GTNAC	1 cut(s)	257
MalI	GATC	1 cut(s)	237
MboI	GATC	1 cut(s)	235
MboII	GAAGA	2 cut(s)	235, 302
MflI	RGATCY	1 cut(s)	235
MhlI	GDGCHC	2 cut(s)	156, 325
MluCI	AATT	2 cut(s)	38, 88
MmeI	TCCRAC	1 cut(s)	271
MnlI	CCTC	1 cut(s)	100
Mph1103I	ATGCAT	1 cut(s)	127
MseI	TTAA	1 cut(s)	15
MspI	CCGG	2 cut(s)	191, 206
MspR9I	CCNGG	1 cut(s)	192
NciI	CCSGG	1 cut(s)	192
NdeI	CATATG	1 cut(s)	103
NdeII	GATC	1 cut(s)	235
NlaIII	CATG	1 cut(s)	77
NlaIV	GGNNCC	4 cut(s)	56, 154, 216, 237
NmeAIII	GCCGAG	1 cut(s)	301
NsiI	ATGCAT	1 cut(s)	127
PfeI	GAWTC	1 cut(s)	29
Psp124BI	GAGCTC	1 cut(s)	325
PspFI	CCCAGC	1 cut(s)	356
PspN4I	GGNNCC	4 cut(s)	56, 154, 216, 237
PspOMI	GGGCCC	1 cut(s)	152
PspPI	GGNCC	3 cut(s)	152, 153, 215
PstI	CTGCAG	1 cut(s)	63
PsuI	RGATCY	1 cut(s)	235
RsaI	GTAC	1 cut(s)	362
RsaNI	GTAC	1 cut(s)	361
SacI	GAGCTC	1 cut(s)	325
SaqAI	TTAA	1 cut(s)	15
Sau3AI	GATC	1 cut(s)	235
Sau96I	GGNCC	3 cut(s)	152, 153, 215
ScrFI	CCNGG	1 cut(s)	192
SduI	GDGCHC	2 cut(s)	156, 325
SetI	ASST	7 cut(s)	69, 82, 121, 253, 325, 358, 368
SfaNI	GCATC	1 cut(s)	270
SfcI	CTRYAG	1 cut(s)	59
SinI	GGWCC	1 cut(s)	215
Sse9I	AATT	2 cut(s)	38, 88
SstI	GAGCTC	1 cut(s)	325
StyD4I	CCNGG	1 cut(s)	190
TaaI	ACNGT	2 cut(s)	20, 380
TasI	AATT	2 cut(s)	38, 88
TfiI	GAWTC	1 cut(s)	29
Tru1I	TTAA	1 cut(s)	15
Tru9I	TTAA	1 cut(s)	15
TscAI	CASTG	3 cut(s)	154, 163, 336
TspDTI	ATGAA	1 cut(s)	90
TspRI	CASTG	3 cut(s)	154, 163, 336
VpaK11BI	GGWCC	1 cut(s)	215
Zsp2I	ATGCAT	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.