Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0010856

Physical Location & Seq

Genomic Coordinates Forward (+)

55500612 .. 55501089

Gene Structure 478 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG295600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGGCGGGGTTGGGAGCAAGAGGAGGTGGACTGGTGCTGCCAAAGCCGGTGACTTTTGTGACCGGAAACGCCAAAAAGCTTGAAGAAGTGCGCGCCATCTTGGGCACCTCCATTCCCTTCAACACTCTCAAGCTCGATTTGCCAGAATTGCAAGGGGAGCCTGAGGACATCTCCAAAGAAAAGGCGAGGTTGGCTGCCGTTCAGATTAATGGTCCTGTGCTTGTGGAAGACACTTGCCTCTGCTTCAATGCCCTCAAGGGTCTACCTGGGCCTTACATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009141 GO:0009143 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0018130 GO:0019438 GO:0019439 GO:0019637 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046434 GO:0046483 GO:0046700 GO:0047429 GO:0055086 GO:0071704 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00983 ko01100 map00230 map00983 map01100

Pfam Domains

Protein Families

Ham1p_like

Protein Analysis

93

Amino Acids

9.8

Weight (kDa)

6.21

Isoelectric Point (pI)

36.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ham1p_like	PF01725	17 - 92	2.8e-19	Ham1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0010856)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13720 AT4G13720
fragaria_vesca	FvH4_4g05750
malus_domestica	MD13G1230900.v1.1
prunus_persica	Prupe.1G060800_v2.0.a1
pyrus_communis	pycom13g20350
rosa_chinensis	RchiOBHm_Chr4g0396911
rosa_laevigata	RLG00000009490 RLG00000027037
rosa_multiflora	Rmu_sc0004788.1_g000001 Rmu_sc0008929.1_g000013 Rmu_sc0038532.1_g000001
rosa_roxburghii	Rroxscaffold_5G00341830
rosa_rugosa	Rorug03G0346100
rosa_samantha	Rh4AG075200 Rh4BG071600 Rh4CG079900 Rh4CG295600 Rh4DG069000
rosa_wichuraiana	Rw4G006030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	104
AccI	GTMKAC	1 cut(s)	262
AccII	CGCG	1 cut(s)	93
AciI	CCGC	1 cut(s)	5
AflIII	ACRYGT	1 cut(s)	276
AgsI	TTSAA	3 cut(s)	83, 121, 247
AjnI	CCWGG	1 cut(s)	265
AluBI	AGCT	2 cut(s)	79, 133
AluI	AGCT	2 cut(s)	79, 133
AoxI	GGCC	1 cut(s)	269
ApeKI	GCWGC	2 cut(s)	37, 194
AseI	ATTAAT	1 cut(s)	207
AspLEI	GCGC	2 cut(s)	93, 95
AspS9I	GGNCC	2 cut(s)	212, 269
AsuHPI	GGTGA	1 cut(s)	61
AvaII	GGWCC	1 cut(s)	212
AxyI	CCTNAGG	1 cut(s)	162
BaeGI	GKGCMC	1 cut(s)	107
BanI	GGYRCC	1 cut(s)	104
BbsI	GAAGAC	1 cut(s)	234
BbvI	GCAGC	2 cut(s)	24, 181
BccI	CCATC	1 cut(s)	104
BceAI	ACGGC	1 cut(s)	182
BciT130I	CCWGG	1 cut(s)	267
BisI	GCNGC	2 cut(s)	38, 195
BlsI	GCNGC	2 cut(s)	39, 196
Bme1390I	CCNGG	1 cut(s)	267
Bme18I	GGWCC	1 cut(s)	212
BmgT120I	GGNCC	2 cut(s)	212, 269
BmiI	GGNNCC	2 cut(s)	106, 159
BmrFI	CCNGG	1 cut(s)	267
BpiI	GAAGAC	1 cut(s)	234
BplI	GAGNNNNNCTC	2 cut(s)	155, 187
BpuEI	CTTGAG	2 cut(s)	113, 239
BsaJI	CCNNGG	1 cut(s)	266
BsaWI	WCCGGW	1 cut(s)	62
Bse118I	RCCGGY	1 cut(s)	46
Bse1I	ACTGG	1 cut(s)	36
Bse21I	CCTNAGG	1 cut(s)	162
BseBI	CCWGG	1 cut(s)	267
BseDI	CCNNGG	1 cut(s)	266
BseMII	CTCAG	1 cut(s)	153
BseNI	ACTGG	1 cut(s)	36
BsePI	GCGCGC	1 cut(s)	91
BseRI	GAGGAG	1 cut(s)	36
BseSI	GKGCMC	1 cut(s)	107
BseXI	GCAGC	2 cut(s)	24, 181
Bsh1236I	CGCG	1 cut(s)	93
BshFI	GGCC	1 cut(s)	271
BshNI	GGYRCC	1 cut(s)	104
BsiSI	CCGG	2 cut(s)	47, 63
BsnI	GGCC	1 cut(s)	271
Bsp1286I	GDGCHC	1 cut(s)	107
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	1 cut(s)	271
BspCNI	CTCAG	1 cut(s)	154
BspFNI	CGCG	1 cut(s)	93
BspLI	GGNNCC	2 cut(s)	106, 159
BspT107I	GGYRCC	1 cut(s)	104
BsrFI	RCCGGY	1 cut(s)	46
BsrI	ACTGG	1 cut(s)	36
BssAI	RCCGGY	1 cut(s)	46
BssECI	CCNNGG	1 cut(s)	266
BssHII	GCGCGC	1 cut(s)	91
Bst2UI	CCWGG	1 cut(s)	267
BstC8I	GCNNGC	1 cut(s)	93
BstDEI	CTNAG	1 cut(s)	162
BstFNI	CGCG	1 cut(s)	93
BstHHI	GCGC	2 cut(s)	93, 95
BstMWI	GCNNNNNNNGC	5 cut(s)	43, 139, 148, 157, 191
BstNI	CCWGG	1 cut(s)	267
BstNSI	RCATGY	1 cut(s)	280
BstSCI	CCNGG	1 cut(s)	265
BstSLI	GKGCMC	1 cut(s)	107
BstUI	CGCG	1 cut(s)	93
BstV1I	GCAGC	2 cut(s)	24, 181
BstV2I	GAAGAC	1 cut(s)	234
Bsu36I	CCTNAGG	1 cut(s)	162
BsuRI	GGCC	1 cut(s)	271
Cac8I	GCNNGC	1 cut(s)	93
CfoI	GCGC	2 cut(s)	93, 95
Cfr10I	RCCGGY	1 cut(s)	46
Cfr13I	GGNCC	2 cut(s)	212, 269
CviAII	CATG	1 cut(s)	277
CviJI	RGCY	6 cut(s)	46, 79, 133, 160, 194, 271
CviKI_1	RGCY	6 cut(s)	46, 79, 133, 160, 194, 271
DdeI	CTNAG	1 cut(s)	162
Eco47I	GGWCC	1 cut(s)	212
Eco81I	CCTNAGG	1 cut(s)	162
EcoRII	CCWGG	1 cut(s)	265
FaeI	CATG	1 cut(s)	280
FaiI	YATR	1 cut(s)	278
FatI	CATG	1 cut(s)	276
FblI	GTMKAC	1 cut(s)	262
Fnu4HI	GCNGC	2 cut(s)	38, 195
Fsp4HI	GCNGC	2 cut(s)	38, 195
GlaI	GCGC	2 cut(s)	92, 94
GluI	GCNGC	2 cut(s)	38, 195
HaeIII	GGCC	1 cut(s)	271
HapII	CCGG	2 cut(s)	47, 63
HhaI	GCGC	2 cut(s)	93, 95
Hin1II	CATG	1 cut(s)	280
Hin6I	GCGC	2 cut(s)	91, 93
HinP1I	GCGC	2 cut(s)	91, 93
HindIII	AAGCTT	1 cut(s)	77
HpaII	CCGG	2 cut(s)	47, 63
HphI	GGTGA	1 cut(s)	61
Hpy166II	GTNNAC	2 cut(s)	29, 263
Hpy188I	TCNGA	1 cut(s)	204
Hpy8I	GTNNAC	2 cut(s)	29, 263
HpyAV	CCTTC	1 cut(s)	127
HpyCH4V	TGCA	1 cut(s)	151
HpyF10VI	GCNNNNNNNGC	5 cut(s)	43, 139, 148, 157, 191
HpyF3I	CTNAG	1 cut(s)	162
Hsp92II	CATG	1 cut(s)	280
HspAI	GCGC	2 cut(s)	91, 93
LmnI	GCTCC	2 cut(s)	14, 157
LpnPI	CCDG	7 cut(s)	17, 60, 76, 156, 174, 228, 252
Lsp1109I	GCAGC	2 cut(s)	24, 181
MaeIII	GTNAC	2 cut(s)	49, 58
MboII	GAAGA	2 cut(s)	95, 239
MhlI	GDGCHC	1 cut(s)	107
MluCI	AATT	1 cut(s)	146
MnlI	CCTC	7 cut(s)	14, 17, 118, 157, 180, 248, 263
MseI	TTAA	1 cut(s)	207
MspI	CCGG	2 cut(s)	47, 63
MspR9I	CCNGG	1 cut(s)	267
MvaI	CCWGG	1 cut(s)	267
MvnI	CGCG	1 cut(s)	93
MwoI	GCNNNNNNNGC	5 cut(s)	43, 139, 148, 157, 191
NlaIII	CATG	1 cut(s)	280
NlaIV	GGNNCC	2 cut(s)	106, 159
NmuCI	GTSAC	2 cut(s)	49, 58
NspI	RCATGY	1 cut(s)	280
PauI	GCGCGC	1 cut(s)	91
PciI	ACATGT	1 cut(s)	276
PkrI	GCNGC	2 cut(s)	39, 196
PscI	ACATGT	1 cut(s)	276
PshBI	ATTAAT	1 cut(s)	207
Psp6I	CCWGG	1 cut(s)	265
PspGI	CCWGG	1 cut(s)	265
PspN4I	GGNNCC	2 cut(s)	106, 159
PspPI	GGNCC	2 cut(s)	212, 269
PteI	GCGCGC	1 cut(s)	91
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	2 cut(s)	38, 195
Sau96I	GGNCC	2 cut(s)	212, 269
ScrFI	CCNGG	1 cut(s)	267
SduI	GDGCHC	1 cut(s)	107
SetI	ASST	6 cut(s)	28, 81, 110, 135, 191, 268
SinI	GGWCC	1 cut(s)	212
SmlI	CTYRAG	2 cut(s)	128, 254
SmoI	CTYRAG	2 cut(s)	128, 254
Sse9I	AATT	1 cut(s)	146
SsiI	CCGC	1 cut(s)	5
StyD4I	CCNGG	1 cut(s)	265
TaqI	TCGA	1 cut(s)	135
TasI	AATT	1 cut(s)	146
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TseFI	GTSAC	2 cut(s)	49, 58
TseI	GCWGC	2 cut(s)	37, 194
Tsp45I	GTSAC	2 cut(s)	49, 58
VpaK11BI	GGWCC	1 cut(s)	212
VspI	ATTAAT	1 cut(s)	207
XceI	RCATGY	1 cut(s)	280
XmiI	GTMKAC	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.