Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0003396

Physical Location & Seq

Genomic Coordinates Forward (+)

5600522 .. 5602161

Gene Structure 1640 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g06281.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGTTTGAAAATGTTATTGATAGGACCTCCCTCAGCATTCTCTGGGAGCTCAGCAGGATTTATGGTCGTGAGGCTAACCTCTTTAAAAGTAATCCCAAGAGTCAACCTACAGTGGAGGAAGAGATGAAGGTTGAAGCATGGAAAACTGCAGGGCCACGTCCTCGCCCACTTCCACCACCTCCAGCTAGGCCTAAATCATATAACATTGAAGGTTGGTGGGGCTGGGTAGTTGAGAGTGATAATGAGCCTGATAGTACAGGAGGCAAGTGTATTCCGGAAGAGCTTTTGCATAGGCGGGATGAGTGGGAGTGGCTTTGCACGCATTTTGATTCAGACAAGTACAAGGGCTACAGCCTATGTGTTCACCCTCGGTCCCAAGCCAACAACCTCGAGACAACGACAATGAAAGGGGCCTTGACACTTCTCCGATTACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0012505 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

146

Amino Acids

16.8

Weight (kDa)

5.95

Isoelectric Point (pI)

48.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G30300 AT3G30300
fragaria_vesca	FvH4_4g06281 FvH4_6g46210 FvH4_6g46210 FvH4_6g46210
malus_domestica	MD09G1076000.v1.1 MD17G1066700.v1.1
prunus_persica	Prupe.3G248000_v2.0.a1
pyrus_communis	pycom09g00340
rosa_chinensis	RchiOBHm_Chr2g0164661 RchiOBHm_Chr6g0258841 RchiOBHm_Chr6g0258851
rosa_laevigata	RLG00000014579 RLG00000021475
rosa_roxburghii	Rroxscaffold_2G00086400 Rroxscaffold_3G00256120 Rroxscaffold_3G00256130 Rroxscaffold_5G00351080 Rroxscaffold_7G00206110
rosa_rugosa	Rorug02G0509600 Rorug05G0583900.1
rosa_samantha	Rh1AG019300 Rh1CG016900 Rh1DG013900 Rh2AG577500 Rh2BG588700 Rh2CG559500 Rh2DG599300 Rh6AG100300 Rh6CG089300 Rh6DG083600 Rh6DG083700
rosa_wichuraiana	Rw1G001260 Rw2G047960 Rw6G008690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	274
AciI	CCGC	1 cut(s)	295
AfaI	GTAC	2 cut(s)	256, 341
AgsI	TTSAA	3 cut(s)	8, 134, 209
AjiI	CACGTC	1 cut(s)	158
AluBI	AGCT	3 cut(s)	49, 185, 283
AluI	AGCT	3 cut(s)	49, 185, 283
Alw21I	GWGCWC	1 cut(s)	51
Alw26I	GTCTC	1 cut(s)	386
Ama87I	CYCGRG	1 cut(s)	389
Aor13HI	TCCGGA	1 cut(s)	274
AoxI	GGCC	3 cut(s)	152, 188, 411
AspS9I	GGNCC	4 cut(s)	24, 152, 372, 411
AsuHPI	GGTGA	1 cut(s)	356
AvaI	CYCGRG	1 cut(s)	389
AvaII	GGWCC	2 cut(s)	24, 372
BanII	GRGCYC	1 cut(s)	51
Bbv12I	GWGCWC	1 cut(s)	51
BbvCI	CCTCAGC	1 cut(s)	32
BcoDI	GTCTC	1 cut(s)	386
BfaI	CTAG	1 cut(s)	186
BfmI	CTRYAG	3 cut(s)	108, 147, 349
BlpI	GCTNAGC	1 cut(s)	50
Bme18I	GGWCC	2 cut(s)	24, 372
BmeT110I	CYCGRG	1 cut(s)	389
BmgBI	CACGTC	1 cut(s)	158
BmgT120I	GGNCC	4 cut(s)	24, 152, 372, 411
BmiI	GGNNCC	2 cut(s)	374, 412
BpmI	CTGGAG	1 cut(s)	165
Bpu10I	CCTNAGC	1 cut(s)	32
Bpu1102I	GCTNAGC	1 cut(s)	50
BsaJI	CCNNGG	1 cut(s)	368
BsaWI	WCCGGW	1 cut(s)	274
BseAI	TCCGGA	1 cut(s)	274
BseDI	CCNNGG	1 cut(s)	368
BseGI	GGATG	1 cut(s)	304
BseMII	CTCAG	2 cut(s)	46, 64
BseYI	CCCAGC	1 cut(s)	222
BshFI	GGCC	3 cut(s)	154, 190, 413
BsiHKAI	GWGCWC	1 cut(s)	51
BsiHKCI	CYCGRG	1 cut(s)	389
BsiSI	CCGG	1 cut(s)	275
BslFI	GGGAC	1 cut(s)	358
BsmAI	GTCTC	1 cut(s)	386
BsmFI	GGGAC	1 cut(s)	358
BsmI	GAATGC	1 cut(s)	36
BsnI	GGCC	3 cut(s)	154, 190, 413
BsoBI	CYCGRG	1 cut(s)	389
Bsp1286I	GDGCHC	1 cut(s)	51
Bsp13I	TCCGGA	1 cut(s)	274
Bsp1720I	GCTNAGC	1 cut(s)	50
BspACI	CCGC	1 cut(s)	295
BspANI	GGCC	3 cut(s)	154, 190, 413
BspCNI	CTCAG	2 cut(s)	45, 63
BspEI	TCCGGA	1 cut(s)	274
BspLI	GGNNCC	2 cut(s)	374, 412
BspMAI	CTGCAG	1 cut(s)	151
BspQI	GCTCTTC	1 cut(s)	273
BssECI	CCNNGG	1 cut(s)	368
Bst4CI	ACNGT	1 cut(s)	112
Bst6I	CTCTTC	2 cut(s)	114, 273
BstC8I	GCNNGC	1 cut(s)	320
BstDEI	CTNAG	2 cut(s)	32, 50
BstF5I	GGATG	1 cut(s)	304
BstMAI	GTCTC	1 cut(s)	386
BstMWI	GCNNNNNNNGC	1 cut(s)	319
BstSFI	CTRYAG	3 cut(s)	108, 147, 349
BsuRI	GGCC	3 cut(s)	154, 190, 413
BtrI	CACGTC	1 cut(s)	158
BtsCI	GGATG	1 cut(s)	304
BtsIMutI	CAGTG	1 cut(s)	117
Cac8I	GCNNGC	1 cut(s)	320
Cfr13I	GGNCC	4 cut(s)	24, 152, 372, 411
Csp6I	GTAC	2 cut(s)	255, 340
CviAII	CATG	1 cut(s)	138
CviQI	GTAC	2 cut(s)	255, 340
DdeI	CTNAG	2 cut(s)	32, 50
DraI	TTTAAA	1 cut(s)	85
Eam1104I	CTCTTC	2 cut(s)	114, 273
EarI	CTCTTC	2 cut(s)	114, 273
Ecl136II	GAGCTC	1 cut(s)	49
Eco147I	AGGCCT	1 cut(s)	190
Eco24I	GRGCYC	1 cut(s)	51
Eco47I	GGWCC	2 cut(s)	24, 372
Eco53kI	GAGCTC	1 cut(s)	49
Eco88I	CYCGRG	1 cut(s)	389
EcoICRI	GAGCTC	1 cut(s)	49
EcoO109I	RGGNCCY	2 cut(s)	24, 411
EcoT38I	GRGCYC	1 cut(s)	51
FaeI	CATG	1 cut(s)	141
FaiI	YATR	6 cut(s)	63, 139, 199, 201, 291, 358
FaqI	GGGAC	1 cut(s)	358
FatI	CATG	1 cut(s)	137
FauI	CCCGC	1 cut(s)	288
FokI	GGATG	1 cut(s)	311
FriOI	GRGCYC	1 cut(s)	51
FspBI	CTAG	1 cut(s)	186
GsaI	CCCAGC	1 cut(s)	226
GsuI	CTGGAG	1 cut(s)	165
HaeIII	GGCC	3 cut(s)	154, 190, 413
HapII	CCGG	1 cut(s)	275
Hin1II	CATG	1 cut(s)	141
HincII	GTYRAC	1 cut(s)	104
HindII	GTYRAC	1 cut(s)	104
HinfI	GANTC	2 cut(s)	100, 329
HpaII	CCGG	1 cut(s)	275
HphI	GGTGA	1 cut(s)	356
Hpy166II	GTNNAC	2 cut(s)	104, 364
Hpy188I	TCNGA	2 cut(s)	334, 428
Hpy188III	TCNNGA	3 cut(s)	68, 275, 391
Hpy8I	GTNNAC	2 cut(s)	104, 364
HpyAV	CCTTC	2 cut(s)	121, 203
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4IV	ACGT	1 cut(s)	157
HpyCH4V	TGCA	3 cut(s)	149, 289, 318
HpyF10VI	GCNNNNNNNGC	1 cut(s)	319
HpyF3I	CTNAG	2 cut(s)	32, 50
HpySE526I	ACGT	1 cut(s)	157
Hsp92II	CATG	1 cut(s)	141
Kpn2I	TCCGGA	1 cut(s)	274
LguI	GCTCTTC	1 cut(s)	273
LmnI	GCTCC	1 cut(s)	46
LpnPI	CCDG	8 cut(s)	28, 40, 135, 195, 208, 243, 261, 288
MaeI	CTAG	1 cut(s)	186
MaeII	ACGT	1 cut(s)	157
MboII	GAAGA	2 cut(s)	131, 290
MhlI	GDGCHC	1 cut(s)	51
MlyI	GAGTC	1 cut(s)	109
MroI	TCCGGA	1 cut(s)	274
MseI	TTAA	1 cut(s)	84
MspI	CCGG	1 cut(s)	275
Mva1269I	GAATGC	1 cut(s)	36
MwoI	GCNNNNNNNGC	1 cut(s)	319
NlaIII	CATG	1 cut(s)	141
NlaIV	GGNNCC	2 cut(s)	374, 412
PaeR7I	CTCGAG	1 cut(s)	389
PceI	AGGCCT	1 cut(s)	190
PciSI	GCTCTTC	1 cut(s)	273
PctI	GAATGC	1 cut(s)	36
PfeI	GAWTC	1 cut(s)	329
PleI	GAGTC	1 cut(s)	108
PpsI	GAGTC	1 cut(s)	108
PpuMI	RGGWCCY	1 cut(s)	24
Psp124BI	GAGCTC	1 cut(s)	51
Psp5II	RGGWCCY	1 cut(s)	24
PspFI	CCCAGC	1 cut(s)	222
PspN4I	GGNNCC	2 cut(s)	374, 412
PspPI	GGNCC	4 cut(s)	24, 152, 372, 411
PspPPI	RGGWCCY	1 cut(s)	24
PstI	CTGCAG	1 cut(s)	151
RsaI	GTAC	2 cut(s)	256, 341
RsaNI	GTAC	2 cut(s)	255, 340
SacI	GAGCTC	1 cut(s)	51
SapI	GCTCTTC	1 cut(s)	273
SaqAI	TTAA	1 cut(s)	84
Sau96I	GGNCC	4 cut(s)	24, 152, 372, 411
SchI	GAGTC	1 cut(s)	109
SduI	GDGCHC	1 cut(s)	51
SfcI	CTRYAG	3 cut(s)	108, 147, 349
Sfr274I	CTCGAG	1 cut(s)	389
SinI	GGWCC	2 cut(s)	24, 372
SlaI	CTCGAG	1 cut(s)	389
SmlI	CTYRAG	1 cut(s)	389
SmoI	CTYRAG	1 cut(s)	389
SseBI	AGGCCT	1 cut(s)	190
SsiI	CCGC	1 cut(s)	295
SspMI	CTAG	1 cut(s)	186
SstI	GAGCTC	1 cut(s)	51
StuI	AGGCCT	1 cut(s)	190
TaaI	ACNGT	1 cut(s)	112
TaiI	ACGT	1 cut(s)	160
TaqI	TCGA	1 cut(s)	390
TaqII	GACCGA	1 cut(s)	360
TatI	WGTACW	2 cut(s)	254, 339
TfiI	GAWTC	1 cut(s)	329
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TscAI	CASTG	1 cut(s)	117
TspDTI	ATGAA	2 cut(s)	140, 419
TspRI	CASTG	1 cut(s)	117
VpaK11BI	GGWCC	2 cut(s)	24, 372
XhoI	CTCGAG	1 cut(s)	389
XspI	CTAG	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.