Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0003396

Physical Location & Seq

Genomic Coordinates Forward (+)

9851272 .. 9853071

Gene Structure 1800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG089300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGTTTAAAAATGTTGTTGATGGGACCTCCCTCAACATTTTCTGGGAGCTTAGTAGGATTTATGGCCATGAGGCTAACCTCTTTGAAAGTAATCCCAGGAGACCACCTACAGTTGAGGAAGAGATGAAGGTTGAAGCATGGAAAACTGTAGGGCCACGTCCTCTTCCACTTCCACTTCCACCGCCTTCAGCCAGGCCCAAATCATATAACATGGAAGGTAATGGGACATCCAAATTTTATCGTGATGGTAATGGGACTAGACTCTATCAGTCAGCTGCATCAAAAATATACAGGCCAGACAGAAAAGAAGTCGTCAGGCTCTTGGAAGAAATCAGTGACCACCTCTACCATGCAAACCAGACATGGCTAATGTCTGTGCACAAGCATTTGAGAAAGAGATTGGTTGATGGGTTATTAGAAGCCTCCACAATATCCAAGTCAATGTCTTTTATCCCTCATCCACTCCCTGAATATGGATTGGAAAGGGCGAAAGCTAGCGGAGGAGCTGATGCAGATTCTGCTATTGGTATTAATGGTGGTGGGTTTCAGATGATGTTTCTGGTGTCTGCTGGCAGGGTCATTGGTCATTGTCCCCAATTAATCGCAAACCCTCTCAACTGGTTGGACCCTTTTGAAGCCGAGAAGCATCCCAACCCTCCACCACAGCCCTTCACTTTGAAAAACAAGTCGTCTAAGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0012505 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

233

Amino Acids

26.17

Weight (kDa)

9.38

Isoelectric Point (pI)

41.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G30300 AT3G30300
fragaria_vesca	FvH4_4g06281 FvH4_6g46210 FvH4_6g46210 FvH4_6g46210
malus_domestica	MD09G1076000.v1.1 MD17G1066700.v1.1
prunus_persica	Prupe.3G248000_v2.0.a1
pyrus_communis	pycom09g00340
rosa_chinensis	RchiOBHm_Chr2g0164661 RchiOBHm_Chr6g0258841 RchiOBHm_Chr6g0258851
rosa_laevigata	RLG00000014579 RLG00000021475
rosa_roxburghii	Rroxscaffold_2G00086400 Rroxscaffold_3G00256120 Rroxscaffold_3G00256130 Rroxscaffold_5G00351080 Rroxscaffold_7G00206110
rosa_rugosa	Rorug02G0509600 Rorug05G0583900.1
rosa_samantha	Rh1AG019300 Rh1CG016900 Rh1DG013900 Rh2AG577500 Rh2BG588700 Rh2CG559500 Rh2DG599300 Rh6AG100300 Rh6CG089300 Rh6DG083600 Rh6DG083700
rosa_wichuraiana	Rw1G001260 Rw2G047960 Rw6G008690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	182, 498
AcoI	YGGCCR	1 cut(s)	64
AcsI	RAATTY	1 cut(s)	233
AcuI	CTGAAG	1 cut(s)	171
AfiI	CCNNNNNNNGG	1 cut(s)	473
AgsI	TTSAA	4 cut(s)	86, 134, 635, 679
AjiI	CACGTC	1 cut(s)	158
AjnI	CCWGG	2 cut(s)	95, 191
AluBI	AGCT	4 cut(s)	49, 275, 494, 506
AluI	AGCT	4 cut(s)	49, 275, 494, 506
Alw21I	GWGCWC	1 cut(s)	381
Alw26I	GTCTC	1 cut(s)	94
Alw44I	GTGCAC	1 cut(s)	377
AlwNI	CAGNNNCTG	1 cut(s)	518
AoxI	GGCC	4 cut(s)	64, 152, 194, 293
ApaLI	GTGCAC	1 cut(s)	377
ApeKI	GCWGC	1 cut(s)	275
ApoI	RAATTY	1 cut(s)	233
AseI	ATTAAT	2 cut(s)	531, 599
AspS9I	GGNCC	4 cut(s)	24, 152, 195, 625
AsuNHI	GCTAGC	1 cut(s)	494
AvaII	GGWCC	2 cut(s)	24, 625
BaeGI	GKGCMC	1 cut(s)	381
BalI	TGGCCA	1 cut(s)	66
Bbv12I	GWGCWC	1 cut(s)	381
BbvI	GCAGC	1 cut(s)	262
BccI	CCATC	3 cut(s)	14, 239, 401
BciT130I	CCWGG	2 cut(s)	97, 193
BcoDI	GTCTC	1 cut(s)	94
BfaI	CTAG	2 cut(s)	258, 495
BfmI	CTRYAG	2 cut(s)	108, 147
BisI	GCNGC	1 cut(s)	276
BlsI	GCNGC	1 cut(s)	277
Bme1390I	CCNGG	2 cut(s)	97, 193
Bme18I	GGWCC	2 cut(s)	24, 625
BmgBI	CACGTC	1 cut(s)	158
BmgT120I	GGNCC	4 cut(s)	24, 152, 195, 625
BmiI	GGNNCC	2 cut(s)	25, 627
BmrFI	CCNGG	2 cut(s)	97, 193
BmsI	GCATC	3 cut(s)	287, 499, 655
BmtI	GCTAGC	1 cut(s)	498
BsaI	GGTCTC	1 cut(s)	94
BsaJI	CCNNGG	1 cut(s)	95
Bsc4I	CCNNNNNNNGG	1 cut(s)	473
Bse1I	ACTGG	1 cut(s)	623
BseBI	CCWGG	2 cut(s)	97, 193
BseDI	CCNNGG	1 cut(s)	95
BseGI	GGATG	3 cut(s)	227, 457, 646
BseLI	CCNNNNNNNGG	1 cut(s)	473
BseNI	ACTGG	1 cut(s)	623
BseRI	GAGGAG	1 cut(s)	516
BseSI	GKGCMC	1 cut(s)	381
BseXI	GCAGC	1 cut(s)	262
BshFI	GGCC	4 cut(s)	66, 154, 196, 295
BsiHKAI	GWGCWC	1 cut(s)	381
BslFI	GGGAC	4 cut(s)	37, 238, 268, 576
BslI	CCNNNNNNNGG	1 cut(s)	473
BsmAI	GTCTC	1 cut(s)	94
BsmFI	GGGAC	4 cut(s)	37, 238, 268, 576
BsnI	GGCC	4 cut(s)	66, 154, 196, 295
Bso31I	GGTCTC	1 cut(s)	94
Bsp1286I	GDGCHC	1 cut(s)	381
BspACI	CCGC	2 cut(s)	182, 498
BspANI	GGCC	4 cut(s)	66, 154, 196, 295
BspLI	GGNNCC	2 cut(s)	25, 627
BspOI	GCTAGC	1 cut(s)	498
BspTNI	GGTCTC	1 cut(s)	94
BsrI	ACTGG	1 cut(s)	623
BssECI	CCNNGG	1 cut(s)	95
Bst2UI	CCWGG	2 cut(s)	97, 193
Bst4CI	ACNGT	2 cut(s)	112, 148
Bst6I	CTCTTC	2 cut(s)	114, 168
BstAPI	GCANNNNNTGC	1 cut(s)	518
BstC8I	GCNNGC	2 cut(s)	496, 571
BstDEI	CTNAG	2 cut(s)	50, 693
BstF5I	GGATG	3 cut(s)	227, 457, 646
BstMAI	GTCTC	1 cut(s)	94
BstMWI	GCNNNNNNNGC	1 cut(s)	518
BstNI	CCWGG	2 cut(s)	97, 193
BstSCI	CCNGG	2 cut(s)	95, 191
BstSFI	CTRYAG	2 cut(s)	108, 147
BstSLI	GKGCMC	1 cut(s)	381
BstV1I	GCAGC	1 cut(s)	262
BsuRI	GGCC	4 cut(s)	66, 154, 196, 295
BtrI	CACGTC	1 cut(s)	158
BtsCI	GGATG	3 cut(s)	227, 457, 646
BtsIMutI	CAGTG	1 cut(s)	340
Cac8I	GCNNGC	2 cut(s)	496, 571
CaiI	CAGNNNCTG	1 cut(s)	518
Cfr13I	GGNCC	4 cut(s)	24, 152, 195, 625
CviAII	CATG	5 cut(s)	68, 138, 211, 350, 363
DdeI	CTNAG	2 cut(s)	50, 693
DraI	TTTAAA	1 cut(s)	7
EaeI	YGGCCR	1 cut(s)	64
Eam1104I	CTCTTC	2 cut(s)	114, 168
EarI	CTCTTC	2 cut(s)	114, 168
Eco31I	GGTCTC	1 cut(s)	94
Eco47I	GGWCC	2 cut(s)	24, 625
Eco57I	CTGAAG	1 cut(s)	171
EcoO109I	RGGNCCY	1 cut(s)	24
EcoRII	CCWGG	2 cut(s)	95, 191
FaeI	CATG	5 cut(s)	71, 141, 214, 353, 366
FaqI	GGGAC	4 cut(s)	37, 238, 268, 576
FatI	CATG	5 cut(s)	67, 137, 210, 349, 362
Fnu4HI	GCNGC	1 cut(s)	276
FokI	GGATG	3 cut(s)	214, 444, 633
Fsp4HI	GCNGC	1 cut(s)	276
FspBI	CTAG	2 cut(s)	258, 495
GluI	GCNGC	1 cut(s)	276
HaeIII	GGCC	4 cut(s)	66, 154, 196, 295
Hin1II	CATG	5 cut(s)	71, 141, 214, 353, 366
HinfI	GANTC	2 cut(s)	261, 515
Hpy166II	GTNNAC	1 cut(s)	379
Hpy188I	TCNGA	1 cut(s)	549
Hpy188III	TCNNGA	1 cut(s)	242
Hpy8I	GTNNAC	1 cut(s)	379
HpyAV	CCTTC	4 cut(s)	121, 195, 209, 679
HpyCH4III	ACNGT	2 cut(s)	112, 148
HpyCH4IV	ACGT	1 cut(s)	157
HpyCH4V	TGCA	4 cut(s)	278, 353, 379, 512
HpyF10VI	GCNNNNNNNGC	1 cut(s)	518
HpyF3I	CTNAG	2 cut(s)	50, 693
HpySE526I	ACGT	1 cut(s)	157
Hsp92II	CATG	5 cut(s)	71, 141, 214, 353, 366
LmnI	GCTCC	2 cut(s)	46, 503
Lsp1109I	GCAGC	1 cut(s)	262
LweI	GCATC	3 cut(s)	287, 499, 655
MaeI	CTAG	2 cut(s)	258, 495
MaeII	ACGT	1 cut(s)	157
MaeIII	GTNAC	1 cut(s)	335
MboII	GAAGA	3 cut(s)	131, 155, 338
MhlI	GDGCHC	1 cut(s)	381
MlsI	TGGCCA	1 cut(s)	66
MluCI	AATT	2 cut(s)	233, 596
MluNI	TGGCCA	1 cut(s)	66
MlyI	GAGTC	1 cut(s)	255
MmeI	TCCRAC	1 cut(s)	603
Mox20I	TGGCCA	1 cut(s)	66
MscI	TGGCCA	1 cut(s)	66
MseI	TTAA	3 cut(s)	6, 531, 599
Msp20I	TGGCCA	1 cut(s)	66
MspA1I	CMGCKG	1 cut(s)	275
MspR9I	CCNGG	2 cut(s)	97, 193
MvaI	CCWGG	2 cut(s)	97, 193
MwoI	GCNNNNNNNGC	1 cut(s)	518
NheI	GCTAGC	1 cut(s)	494
NlaIII	CATG	5 cut(s)	71, 141, 214, 353, 366
NlaIV	GGNNCC	2 cut(s)	25, 627
NmeAIII	GCCGAG	1 cut(s)	664
NmuCI	GTSAC	1 cut(s)	335
PfeI	GAWTC	1 cut(s)	515
PkrI	GCNGC	1 cut(s)	277
PleI	GAGTC	1 cut(s)	255
PpsI	GAGTC	1 cut(s)	255
PpuMI	RGGWCCY	1 cut(s)	24
PshBI	ATTAAT	2 cut(s)	531, 599
Psp5II	RGGWCCY	1 cut(s)	24
Psp6I	CCWGG	2 cut(s)	95, 191
PspGI	CCWGG	2 cut(s)	95, 191
PspN4I	GGNNCC	2 cut(s)	25, 627
PspPI	GGNCC	4 cut(s)	24, 152, 195, 625
PspPPI	RGGWCCY	1 cut(s)	24
PstNI	CAGNNNCTG	1 cut(s)	518
PvuII	CAGCTG	1 cut(s)	275
SaqAI	TTAA	3 cut(s)	6, 531, 599
SatI	GCNGC	1 cut(s)	276
Sau96I	GGNCC	4 cut(s)	24, 152, 195, 625
SchI	GAGTC	1 cut(s)	255
ScrFI	CCNGG	2 cut(s)	97, 193
SduI	GDGCHC	1 cut(s)	381
SfaNI	GCATC	3 cut(s)	287, 499, 655
SfcI	CTRYAG	2 cut(s)	108, 147
SinI	GGWCC	2 cut(s)	24, 625
Sse9I	AATT	2 cut(s)	233, 596
SsiI	CCGC	2 cut(s)	182, 498
SspMI	CTAG	2 cut(s)	258, 495
StyD4I	CCNGG	2 cut(s)	95, 191
TaaI	ACNGT	2 cut(s)	112, 148
TaiI	ACGT	1 cut(s)	160
TasI	AATT	2 cut(s)	233, 596
TfiI	GAWTC	1 cut(s)	515
Tru1I	TTAA	3 cut(s)	6, 531, 599
Tru9I	TTAA	3 cut(s)	6, 531, 599
TscAI	CASTG	1 cut(s)	340
TseFI	GTSAC	1 cut(s)	335
TseI	GCWGC	1 cut(s)	275
Tsp45I	GTSAC	1 cut(s)	335
TspDTI	ATGAA	1 cut(s)	140
TspRI	CASTG	1 cut(s)	340
VneI	GTGCAC	1 cut(s)	377
VpaK11BI	GGWCC	2 cut(s)	24, 625
VspI	ATTAAT	2 cut(s)	531, 599
XapI	RAATTY	1 cut(s)	233
XspI	CTAG	2 cut(s)	258, 495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.