Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003396

Physical Location & Seq

Genomic Coordinates Reverse (-)

50525459 .. 50532535

Gene Structure 7077 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00256120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGCATTTACTGAGGAGGGGCGTTTCAGAGTTCCATTCTTCAATCACAATCTTCCCAAGGCGAACCATTGGTGAAAGCTTGAATTTTTCCAAGACTAGTGCAATGTATAGAAGGCTATGGGGTCCGGTAAGGCCTCTCGAATCGTTGCATCCTGATGCAAATCCCAGAGGATATTATTCCGATCCCAATTCAGATACCAATGGTTTTATCTTTGTGAGGATACAAGGCGGGTTTCATGAGATCAGGAATTCGATATGTGATGTAGTTGTGATTGCTCGGTTTCTTAATACAACATTAGTTATTCCTGAGCTCCAATCAACCACAAGCAGCAAGGGCATCAGCTCTCAGTTTAAGAGTTTTGCCTATCTCTACAATGAGGACCAATTCATGGCAGCTTTATCAAAAGAATATTCCCTCGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0012505 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

140

Amino Acids

15.94

Weight (kDa)

9.2

Isoelectric Point (pI)

44.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
O-FucT	PF10250	69 - 140	6.1e-17	GDP-fucose protein O-fucosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G30300 AT3G30300
fragaria_vesca	FvH4_4g06281 FvH4_6g46210 FvH4_6g46210 FvH4_6g46210
malus_domestica	MD09G1076000.v1.1 MD17G1066700.v1.1
prunus_persica	Prupe.3G248000_v2.0.a1
pyrus_communis	pycom09g00340
rosa_chinensis	RchiOBHm_Chr2g0164661 RchiOBHm_Chr6g0258841 RchiOBHm_Chr6g0258851
rosa_laevigata	RLG00000014579 RLG00000021475
rosa_roxburghii	Rroxscaffold_2G00086400 Rroxscaffold_3G00256120 Rroxscaffold_3G00256130 Rroxscaffold_5G00351080 Rroxscaffold_7G00206110
rosa_rugosa	Rorug02G0509600 Rorug05G0583900.1
rosa_samantha	Rh1AG019300 Rh1CG016900 Rh1DG013900 Rh2AG577500 Rh2BG588700 Rh2CG559500 Rh2DG599300 Rh6AG100300 Rh6CG089300 Rh6DG083600 Rh6DG083700
rosa_wichuraiana	Rw1G001260 Rw2G047960 Rw6G008690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	388
AciI	CCGC	1 cut(s)	228
AclWI	GGATC	1 cut(s)	176
AcsI	RAATTY	2 cut(s)	82, 247
AfiI	CCNNNNNNNGG	1 cut(s)	388
AgsI	TTSAA	2 cut(s)	42, 82
AhlI	ACTAGT	1 cut(s)	95
AluBI	AGCT	4 cut(s)	78, 310, 342, 395
AluI	AGCT	4 cut(s)	78, 310, 342, 395
Alw21I	GWGCWC	1 cut(s)	312
AlwI	GGATC	1 cut(s)	176
AoxI	GGCC	1 cut(s)	131
ApeKI	GCWGC	2 cut(s)	327, 392
ApoI	RAATTY	2 cut(s)	82, 247
AspS9I	GGNCC	2 cut(s)	122, 379
AsuHPI	GGTGA	1 cut(s)	83
AvaII	GGWCC	2 cut(s)	122, 379
BanII	GRGCYC	1 cut(s)	312
Bbv12I	GWGCWC	1 cut(s)	312
BbvI	GCAGC	2 cut(s)	339, 404
BciVI	GTATCC	1 cut(s)	213
BcuI	ACTAGT	1 cut(s)	95
BfaI	CTAG	1 cut(s)	96
BfuI	GTATCC	1 cut(s)	213
BisI	GCNGC	2 cut(s)	328, 393
BlsI	GCNGC	2 cut(s)	329, 394
Bme18I	GGWCC	2 cut(s)	122, 379
BmgT120I	GGNCC	2 cut(s)	122, 379
BmiI	GGNNCC	1 cut(s)	123
BmsI	GCATC	3 cut(s)	145, 157, 345
Bpu10I	CCTNAGC	1 cut(s)	306
BsaBI	GATNNNNATC	1 cut(s)	159
BsaJI	CCNNGG	1 cut(s)	56
BsaWI	WCCGGW	1 cut(s)	124
Bsc4I	CCNNNNNNNGG	1 cut(s)	388
Bse3DI	GCAATG	1 cut(s)	108
Bse8I	GATNNNNATC	1 cut(s)	159
BseDI	CCNNGG	1 cut(s)	56
BseGI	GGATG	1 cut(s)	148
BseJI	GATNNNNATC	1 cut(s)	159
BseLI	CCNNNNNNNGG	1 cut(s)	388
BseMI	GCAATG	1 cut(s)	108
BseMII	CTCAG	2 cut(s)	297, 359
BseRI	GAGGAG	1 cut(s)	28
BseXI	GCAGC	2 cut(s)	339, 404
BshFI	GGCC	1 cut(s)	133
BsiHKAI	GWGCWC	1 cut(s)	312
BsiSI	CCGG	1 cut(s)	125
BslI	CCNNNNNNNGG	1 cut(s)	388
BsnI	GGCC	1 cut(s)	133
Bsp1286I	GDGCHC	1 cut(s)	312
Bsp143I	GATC	2 cut(s)	181, 240
BspACI	CCGC	1 cut(s)	228
BspANI	GGCC	1 cut(s)	133
BspCNI	CTCAG	2 cut(s)	298, 358
BspHI	TCATGA	1 cut(s)	235
BspLI	GGNNCC	1 cut(s)	123
BspPI	GGATC	1 cut(s)	176
BsrDI	GCAATG	1 cut(s)	108
BssECI	CCNNGG	1 cut(s)	56
BssMI	GATC	2 cut(s)	181, 240
BssT1I	CCWWGG	1 cut(s)	56
BstDEI	CTNAG	3 cut(s)	11, 306, 345
BstF5I	GGATG	1 cut(s)	148
BstKTI	GATC	2 cut(s)	184, 243
BstMBI	GATC	2 cut(s)	181, 240
BstMWI	GCNNNNNNNGC	1 cut(s)	333
BstV1I	GCAGC	2 cut(s)	339, 404
BsuI	GTATCC	1 cut(s)	213
BsuRI	GGCC	1 cut(s)	133
BtsCI	GGATG	1 cut(s)	148
CciI	TCATGA	1 cut(s)	235
Cfr13I	GGNCC	2 cut(s)	122, 379
CviAII	CATG	2 cut(s)	236, 388
CviJI	RGCY	6 cut(s)	78, 115, 133, 310, 342, 395
CviKI_1	RGCY	6 cut(s)	78, 115, 133, 310, 342, 395
DdeI	CTNAG	3 cut(s)	11, 306, 345
DpnI	GATC	2 cut(s)	183, 242
DpnII	GATC	2 cut(s)	181, 240
Ecl136II	GAGCTC	1 cut(s)	310
Eco130I	CCWWGG	1 cut(s)	56
Eco147I	AGGCCT	1 cut(s)	133
Eco24I	GRGCYC	1 cut(s)	312
Eco47I	GGWCC	2 cut(s)	122, 379
Eco53kI	GAGCTC	1 cut(s)	310
EcoICRI	GAGCTC	1 cut(s)	310
EcoRI	GAATTC	1 cut(s)	247
EcoT14I	CCWWGG	1 cut(s)	56
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	312
ErhI	CCWWGG	1 cut(s)	56
FaeI	CATG	2 cut(s)	239, 391
FaiI	YATR	5 cut(s)	108, 118, 237, 256, 389
FatI	CATG	2 cut(s)	235, 387
FauI	CCCGC	1 cut(s)	221
Fnu4HI	GCNGC	2 cut(s)	328, 393
FokI	GGATG	1 cut(s)	135
FriOI	GRGCYC	1 cut(s)	312
Fsp4HI	GCNGC	2 cut(s)	328, 393
FspBI	CTAG	1 cut(s)	96
GluI	GCNGC	2 cut(s)	328, 393
HaeIII	GGCC	1 cut(s)	133
HapII	CCGG	1 cut(s)	125
Hin1II	CATG	2 cut(s)	239, 391
HindIII	AAGCTT	1 cut(s)	76
HinfI	GANTC	1 cut(s)	140
HpaII	CCGG	1 cut(s)	125
HphI	GGTGA	1 cut(s)	83
Hpy188I	TCNGA	3 cut(s)	28, 181, 193
Hpy188III	TCNNGA	5 cut(s)	137, 152, 236, 244, 305
HpyAV	CCTTC	1 cut(s)	105
HpyCH4V	TGCA	4 cut(s)	4, 101, 148, 158
HpyF10VI	GCNNNNNNNGC	1 cut(s)	333
HpyF3I	CTNAG	3 cut(s)	11, 306, 345
Hsp92II	CATG	2 cut(s)	239, 391
Kzo9I	GATC	2 cut(s)	181, 240
LmnI	GCTCC	1 cut(s)	315
LpnPI	CCDG	5 cut(s)	138, 165, 178, 229, 318
Lsp1109I	GCAGC	2 cut(s)	339, 404
LweI	GCATC	3 cut(s)	145, 157, 345
MaeI	CTAG	1 cut(s)	96
MalI	GATC	2 cut(s)	183, 242
MboI	GATC	2 cut(s)	181, 240
MboII	GAAGA	2 cut(s)	30, 43
MhlI	GDGCHC	1 cut(s)	312
MluCI	AATT	4 cut(s)	82, 187, 247, 383
MnlI	CCTC	6 cut(s)	6, 9, 144, 161, 210, 370
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	3 cut(s)	285, 351, 421
MslI	CAYNNNNRTG	1 cut(s)	153
MspI	CCGG	1 cut(s)	125
MwoI	GCNNNNNNNGC	1 cut(s)	333
NdeII	GATC	2 cut(s)	181, 240
NlaIII	CATG	2 cut(s)	239, 391
NlaIV	GGNNCC	1 cut(s)	123
NsiI	ATGCAT	1 cut(s)	6
PagI	TCATGA	1 cut(s)	235
PceI	AGGCCT	1 cut(s)	133
PfeI	GAWTC	1 cut(s)	140
PflMI	CCANNNNNTGG	1 cut(s)	388
PkrI	GCNGC	2 cut(s)	329, 394
Psp124BI	GAGCTC	1 cut(s)	312
PspN4I	GGNNCC	1 cut(s)	123
PspPI	GGNCC	2 cut(s)	122, 379
RseI	CAYNNNNRTG	1 cut(s)	153
SacI	GAGCTC	1 cut(s)	312
SaqAI	TTAA	3 cut(s)	285, 351, 421
SatI	GCNGC	2 cut(s)	328, 393
Sau3AI	GATC	2 cut(s)	181, 240
Sau96I	GGNCC	2 cut(s)	122, 379
SduI	GDGCHC	1 cut(s)	312
SetI	ASST	4 cut(s)	80, 312, 344, 397
SfaNI	GCATC	3 cut(s)	145, 157, 345
SinI	GGWCC	2 cut(s)	122, 379
SmiMI	CAYNNNNRTG	1 cut(s)	153
SpeI	ACTAGT	1 cut(s)	95
Sse9I	AATT	4 cut(s)	82, 187, 247, 383
SseBI	AGGCCT	1 cut(s)	133
SsiI	CCGC	1 cut(s)	228
SspI	AATATT	1 cut(s)	410
SspMI	CTAG	1 cut(s)	96
SstI	GAGCTC	1 cut(s)	312
StuI	AGGCCT	1 cut(s)	133
StyI	CCWWGG	1 cut(s)	56
TaqI	TCGA	2 cut(s)	138, 251
TasI	AATT	4 cut(s)	82, 187, 247, 383
TfiI	GAWTC	1 cut(s)	140
Tru1I	TTAA	3 cut(s)	285, 351, 421
Tru9I	TTAA	3 cut(s)	285, 351, 421
TseI	GCWGC	2 cut(s)	327, 392
TspDTI	ATGAA	2 cut(s)	224, 376
Van91I	CCANNNNNTGG	1 cut(s)	388
VpaK11BI	GGWCC	2 cut(s)	122, 379
XapI	RAATTY	2 cut(s)	82, 247
XspI	CTAG	1 cut(s)	96
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.