Rh2BG588700

GDP-fucose protein O-fucosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0003396
Physical Location & Seq
Forward (+)
80503183 .. 80509047
5865 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG588700.1

Sequence Viewer

Length: 1575 bp
ATGAAAGCAGAAGGGAAGATGGTGTTGAAGTCAAAAATGAAATGGGTTGGTCTTTTTGGTCTGGTTCTCTCAGCTATTTCTCTGTTTGTTCACTTTTTACTGGCTAGATTTACTGAGGAGGGCGTTTCAGAGTTCCACTCTTCAATCACAATCTTCCCAAGGCGAACCATTGGTGAAAGCTTGAATTTTTCCAAGACTAGTGCAATGTATAGAAGGCTATGGGGTCCGGTAAGGCCTCTCGAATCATTGCATCCTGATGCAAATCCCAGAGGATATTATTCCGATCCCAATTCAGATACCAATGGTTTTATCTTTGTGAGGATACAAGGCGGGTTTCATGAGATCAGGAATTCGATATGTGATGTAGTTGTGATTTCTCGGTTTCTTAATGCAACATTAGTTATTCCTGAGCTCCAGTCAACCACAAGCAGCAAGGGCATCAGCTCTCAGTTTAAGAGTTTTGCCTATCTCTACAATGAGGACCAATTCATGGCAGCATTATCAAAAGACATCAAAGTTGTGAAAACCCTCCCTAAAAATCTCAAAGGGCAAAGGAAGAAAAAGAATATTCCCTCGTTTAAAGTGCCTTACTCTGCTTCACCATACTACTATAAGCACCGCGTTCTTCCAGTTTTAAAGAAGCATTCAGTAGTTGAACTAGTTGTGTCTGACGGTGGATGCTTGCAGGCTATCCTGCCACCAGATCTTGAAGAGTACCAGAGGCTGAGATGTAGGGTTGCTTTTCATGCACTTCGGTTCCGGCAGGAGGTCCAGGAGCTTGCTACCAAAATTTTACACAGATTACGGGCCCCTGGACAGCCATTTGTAGCATTTGACCCTGGAATGACCAGAGATGCTTTGGCATATCATGGTTGTGCCGAACTCTTTCAGGATGTACACACTGAACTCATTCAGCACAAAAGACAGTGGATGATAAAACGTGGGATTGTCAAGGGGAATCTTTCGGTGAATTCTGCAAAACAACGACTTAAAGGTTCTTGCCCACTAATGCCGGAAGAGATTGGTATTATTCTTCGTGCATATGGATACTTTTGGGATACAATAATATATGTGTCTGGTGGAGAAATCTTTGGTGGCCAAAGGACATTGATCCCTCTTCGTGCGATGTTTGAAAATGTTGTTGATAGGACCTCCCTCAGCATTCTCTGGGAGCTCAGTAGGATTTATGGTCGTGAGGCTAACCTCTTCGAAAGTAATCCCAGGAGTCCACCTACAGTCGAGGAAGAGATGAAGGTTGAAGCATGGAAAACTGCAGGGCCACGTCCTCGCCCACTTCCACCACCTCCAGCCAGGCCTAAATCATATAACATTGAAGGTTGGTGGGGCTGGGTAGCTGAGAGTGATAATGAGCCTGATAGTACAGTTATGGAATTGAGGACAAACGCTCATAAACTACTTTGGGAAGCAATTGATTACGTGATATGCGTTGAAGCTGATGTATTTATCCCTGGATTTGATCGTGATGGTAAGGGACATCCAAATTTTGCAAGCTTAGTAATGGGACATAGACTCTATCAGTCAGCTGCATCAAAAACATACAGGCCAGACAGGTAA

Protein Analysis

524

Amino Acids

59.65

Weight (kDa)

9.46

Isoelectric Point (pI)

43.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
O-FucT PF10250 103 - 399 2.5e-69 GDP-fucose protein O-fucosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 490
AccII CGCG 1 cut(s) 621
AciI CCGC 2 cut(s) 330, 619
AclWI GGATC 2 cut(s) 278, 1105
AcoI YGGCCR 1 cut(s) 1096
AcsI RAATTY 5 cut(s) 184, 349, 789, 970, 1501
AfaI GTAC 3 cut(s) 716, 897, 1381
AfiI CCNNNNNNNGG 2 cut(s) 490, 766
AgsI TTSAA 9 cut(s) 28, 144, 184, 656, 710, 1133, 1259, 1334, 1451
AhlI ACTAGT 2 cut(s) 197, 658
AjiI CACGTC 1 cut(s) 1283
AjnI CCWGG 6 cut(s) 771, 811, 838, 1220, 1310, 1468
Alw21I GWGCWC 2 cut(s) 414, 1176
AlwI GGATC 2 cut(s) 278, 1105
AlwNI CAGNNNCTG 1 cut(s) 724
AoxI GGCC 6 cut(s) 233, 807, 1096, 1277, 1313, 1562
ApaI GGGCCC 1 cut(s) 811
ApeKI GCWGC 3 cut(s) 429, 494, 1544
ApoI RAATTY 5 cut(s) 184, 349, 789, 970, 1501
Asp700I GAANNNNTTC 2 cut(s) 885, 909
AspS9I GGNCC 7 cut(s) 224, 481, 769, 807, 808, 1149, 1277
AsuHPI GGTGA 3 cut(s) 185, 591, 979
AsuII TTCGAA 1 cut(s) 1209
AvaII GGWCC 4 cut(s) 224, 481, 769, 1149
BaeGI GKGCMC 1 cut(s) 811
BalI TGGCCA 1 cut(s) 1098
BanII GRGCYC 3 cut(s) 414, 811, 1176
Bbv12I GWGCWC 2 cut(s) 414, 1176
BbvCI CCTCAGC 1 cut(s) 1157
BbvI GCAGC 3 cut(s) 441, 506, 1531
BccI CCATC 2 cut(s) 13, 1478
BciT130I CCWGG 6 cut(s) 773, 813, 840, 1222, 1312, 1470
BciVI GTATCC 3 cut(s) 315, 1040, 1051
BcuI ACTAGT 2 cut(s) 197, 658
BfaI CTAG 3 cut(s) 105, 198, 659
BfmI CTRYAG 2 cut(s) 1233, 1272
BfuI GTATCC 3 cut(s) 315, 1040, 1051
BglII AGATCT 1 cut(s) 703
BisI GCNGC 3 cut(s) 430, 495, 1545
BlsI GCNGC 3 cut(s) 431, 496, 1546
Bme1390I CCNGG 6 cut(s) 773, 813, 840, 1222, 1312, 1470
Bme18I GGWCC 4 cut(s) 224, 481, 769, 1149
BmgBI CACGTC 1 cut(s) 1283
BmgT120I GGNCC 7 cut(s) 224, 481, 769, 807, 808, 1149, 1277
BmiI GGNNCC 4 cut(s) 225, 758, 809, 810
BmrFI CCNGG 6 cut(s) 773, 813, 840, 1222, 1312, 1470
BmsI GCATC 6 cut(s) 247, 259, 447, 668, 844, 1556
BplI GAGNNNNNCTC 2 cut(s) 122, 154
BpmI CTGGAG 2 cut(s) 398, 1290
Bpu10I CCTNAGC 2 cut(s) 408, 1157
Bpu14I TTCGAA 1 cut(s) 1209
BsaAI YACGTR 1 cut(s) 1438
BsaBI GATNNNNATC 1 cut(s) 261
BsaJI CCNNGG 5 cut(s) 158, 811, 838, 1220, 1468
BsaWI WCCGGW 1 cut(s) 226
Bsc4I CCNNNNNNNGG 2 cut(s) 490, 766
Bse1I ACTGG 3 cut(s) 105, 415, 629
Bse3DI GCAATG 2 cut(s) 210, 245
Bse8I GATNNNNATC 1 cut(s) 261
BseBI CCWGG 6 cut(s) 773, 813, 840, 1222, 1312, 1470
BseDI CCNNGG 5 cut(s) 158, 811, 838, 1220, 1468
BseGI GGATG 5 cut(s) 250, 683, 898, 936, 1495
BseJI GATNNNNATC 1 cut(s) 261
BseLI CCNNNNNNNGG 2 cut(s) 490, 766
BseMI GCAATG 2 cut(s) 210, 245
BseMII CTCAG 8 cut(s) 84, 105, 399, 461, 716, 1171, 1189, 1347
BseNI ACTGG 3 cut(s) 105, 415, 629
BseRI GAGGAG 1 cut(s) 131
BseSI GKGCMC 1 cut(s) 811
BseXI GCAGC 3 cut(s) 441, 506, 1531
BseYI CCCAGC 1 cut(s) 1347
Bsh1236I CGCG 1 cut(s) 621
BshFI GGCC 6 cut(s) 235, 809, 1098, 1279, 1315, 1564
BsiHKAI GWGCWC 2 cut(s) 414, 1176
BsiSI CCGG 3 cut(s) 227, 760, 1013
BslFI GGGAC 2 cut(s) 1506, 1536
BslI CCNNNNNNNGG 2 cut(s) 490, 766
BsmFI GGGAC 2 cut(s) 1506, 1536
BsmI GAATGC 2 cut(s) 643, 1161
BsnI GGCC 6 cut(s) 235, 809, 1098, 1279, 1315, 1564
Bsp119I TTCGAA 1 cut(s) 1209
Bsp120I GGGCCC 1 cut(s) 807
Bsp1286I GDGCHC 3 cut(s) 414, 811, 1176
Bsp1407I TGTACA 1 cut(s) 895
Bsp143I GATC 5 cut(s) 283, 342, 703, 1110, 1477
BspACI CCGC 2 cut(s) 330, 619
BspANI GGCC 6 cut(s) 235, 809, 1098, 1279, 1315, 1564
BspCNI CTCAG 8 cut(s) 83, 106, 400, 460, 717, 1170, 1188, 1348
BspFNI CGCG 1 cut(s) 621
BspHI TCATGA 1 cut(s) 337
BspLI GGNNCC 4 cut(s) 225, 758, 809, 810
BspMAI CTGCAG 1 cut(s) 1276
BspPI GGATC 2 cut(s) 278, 1105
BspT104I TTCGAA 1 cut(s) 1209
BsrDI GCAATG 2 cut(s) 210, 245
BsrGI TGTACA 1 cut(s) 895
BsrI ACTGG 3 cut(s) 105, 415, 629
BssECI CCNNGG 5 cut(s) 158, 811, 838, 1220, 1468
BssMI GATC 5 cut(s) 283, 342, 703, 1110, 1477
BssT1I CCWWGG 1 cut(s) 158
Bst2UI CCWGG 6 cut(s) 773, 813, 840, 1222, 1312, 1470
Bst4CI ACNGT 4 cut(s) 674, 927, 1237, 1384
Bst6I CTCTTC 6 cut(s) 145, 705, 1011, 1122, 1211, 1239
BstAUI TGTACA 1 cut(s) 895
BstBAI YACGTR 1 cut(s) 1438
BstBI TTCGAA 1 cut(s) 1209
BstC8I GCNNGC 4 cut(s) 683, 687, 780, 1510
BstDEI CTNAG 9 cut(s) 70, 114, 408, 447, 725, 1157, 1175, 1356, 1513
BstF5I GGATG 5 cut(s) 250, 683, 898, 936, 1495
BstFNI CGCG 1 cut(s) 621
BstKTI GATC 5 cut(s) 286, 345, 706, 1113, 1480
BstMBI GATC 5 cut(s) 283, 342, 703, 1110, 1477
BstMWI GCNNNNNNNGC 2 cut(s) 435, 746
BstNI CCWGG 6 cut(s) 773, 813, 840, 1222, 1312, 1470
BstSCI CCNGG 6 cut(s) 771, 811, 838, 1220, 1310, 1468
BstSFI CTRYAG 2 cut(s) 1233, 1272
BstSLI GKGCMC 1 cut(s) 811
BstUI CGCG 1 cut(s) 621
BstV1I GCAGC 3 cut(s) 441, 506, 1531
BstX2I RGATCY 1 cut(s) 703
BstYI RGATCY 1 cut(s) 703
BsuI GTATCC 3 cut(s) 315, 1040, 1051
BsuRI GGCC 6 cut(s) 235, 809, 1098, 1279, 1315, 1564
BtgZI GCGATG 1 cut(s) 1139
BtrI CACGTC 1 cut(s) 1283
BtsCI GGATG 5 cut(s) 250, 683, 898, 936, 1495
BtsIMutI CAGTG 2 cut(s) 900, 932
Cac8I GCNNGC 4 cut(s) 683, 687, 780, 1510
CaiI CAGNNNCTG 1 cut(s) 724
CciI TCATGA 1 cut(s) 337
Cfr13I GGNCC 7 cut(s) 224, 481, 769, 807, 808, 1149, 1277
Csp6I GTAC 3 cut(s) 715, 896, 1380
CviAII CATG 5 cut(s) 338, 490, 746, 869, 1263
CviQI GTAC 3 cut(s) 715, 896, 1380
DdeI CTNAG 9 cut(s) 70, 114, 408, 447, 725, 1157, 1175, 1356, 1513
DpnI GATC 5 cut(s) 285, 344, 705, 1112, 1479
DpnII GATC 5 cut(s) 283, 342, 703, 1110, 1477
DraI TTTAAA 2 cut(s) 580, 636
EaeI YGGCCR 1 cut(s) 1096
Eam1104I CTCTTC 6 cut(s) 145, 705, 1011, 1122, 1211, 1239
EarI CTCTTC 6 cut(s) 145, 705, 1011, 1122, 1211, 1239
Ecl136II GAGCTC 2 cut(s) 412, 1174
Eco130I CCWWGG 1 cut(s) 158
Eco147I AGGCCT 2 cut(s) 235, 1315
Eco24I GRGCYC 3 cut(s) 414, 811, 1176
Eco47I GGWCC 4 cut(s) 224, 481, 769, 1149
Eco53kI GAGCTC 2 cut(s) 412, 1174
EcoICRI GAGCTC 2 cut(s) 412, 1174
EcoO109I RGGNCCY 2 cut(s) 808, 1149
EcoRI GAATTC 2 cut(s) 349, 970
EcoRII CCWGG 6 cut(s) 771, 811, 838, 1220, 1310, 1468
EcoT14I CCWWGG 1 cut(s) 158
EcoT38I GRGCYC 3 cut(s) 414, 811, 1176
ErhI CCWWGG 1 cut(s) 158
FaeI CATG 5 cut(s) 341, 493, 749, 872, 1266
FaqI GGGAC 2 cut(s) 1506, 1536
FatI CATG 5 cut(s) 337, 489, 745, 868, 1262
FauI CCCGC 1 cut(s) 323
FauNDI CATATG 1 cut(s) 1042
Fnu4HI GCNGC 3 cut(s) 430, 495, 1545
FokI GGATG 5 cut(s) 237, 690, 905, 943, 1482
FriOI GRGCYC 3 cut(s) 414, 811, 1176
Fsp4HI GCNGC 3 cut(s) 430, 495, 1545
FspBI CTAG 3 cut(s) 105, 198, 659
GluI GCNGC 3 cut(s) 430, 495, 1545
GsaI CCCAGC 1 cut(s) 1351
GsuI CTGGAG 2 cut(s) 398, 1290
HaeIII GGCC 6 cut(s) 235, 809, 1098, 1279, 1315, 1564
HapII CCGG 3 cut(s) 227, 760, 1013
Hin1II CATG 5 cut(s) 341, 493, 749, 872, 1266
HincII GTYRAC 1 cut(s) 420
HindII GTYRAC 1 cut(s) 420
HindIII AAGCTT 2 cut(s) 178, 1510
HinfI GANTC 4 cut(s) 242, 958, 1225, 1530
HpaII CCGG 3 cut(s) 227, 760, 1013
HphI GGTGA 3 cut(s) 185, 591, 979
Hpy166II GTNNAC 4 cut(s) 91, 420, 898, 1229
Hpy188I TCNGA 4 cut(s) 130, 283, 295, 670
Hpy188III TCNNGA 9 cut(s) 239, 254, 338, 346, 407, 707, 890, 1193, 1481
Hpy8I GTNNAC 4 cut(s) 91, 420, 898, 1229
HpyAV CCTTC 4 cut(s) 5, 207, 1246, 1328
HpyCH4III ACNGT 4 cut(s) 674, 927, 1237, 1384
HpyCH4IV ACGT 3 cut(s) 940, 1282, 1437
HpyF10VI GCNNNNNNNGC 2 cut(s) 435, 746
HpyF3I CTNAG 9 cut(s) 70, 114, 408, 447, 725, 1157, 1175, 1356, 1513
HpySE526I ACGT 3 cut(s) 940, 1282, 1437
Hsp92II CATG 5 cut(s) 341, 493, 749, 872, 1266
Kzo9I GATC 5 cut(s) 283, 342, 703, 1110, 1477
LmnI GCTCC 3 cut(s) 417, 775, 1171
Lsp1109I GCAGC 3 cut(s) 441, 506, 1531
LweI GCATC 6 cut(s) 247, 259, 447, 668, 844, 1556
MaeI CTAG 3 cut(s) 105, 198, 659
MaeII ACGT 3 cut(s) 940, 1282, 1437
MalI GATC 5 cut(s) 285, 344, 705, 1112, 1479
MboI GATC 5 cut(s) 283, 342, 703, 1110, 1477
MfeI CAATTG 1 cut(s) 1428
MflI RGATCY 1 cut(s) 703
MhlI GDGCHC 3 cut(s) 414, 811, 1176
MlsI TGGCCA 1 cut(s) 1098
MluCI AATT 9 cut(s) 184, 289, 349, 485, 789, 970, 1391, 1428, 1501
MluNI TGGCCA 1 cut(s) 1098
MlyI GAGTC 2 cut(s) 1234, 1524
Mox20I TGGCCA 1 cut(s) 1098
MroXI GAANNNNTTC 2 cut(s) 885, 909
MscI TGGCCA 1 cut(s) 1098
MseI TTAA 5 cut(s) 387, 453, 579, 635, 990
MslI CAYNNNNRTG 2 cut(s) 255, 873
Msp20I TGGCCA 1 cut(s) 1098
MspA1I CMGCKG 1 cut(s) 1544
MspI CCGG 3 cut(s) 227, 760, 1013
MspR9I CCNGG 6 cut(s) 773, 813, 840, 1222, 1312, 1470
MunI CAATTG 1 cut(s) 1428
Mva1269I GAATGC 2 cut(s) 643, 1161
MvaI CCWGG 6 cut(s) 773, 813, 840, 1222, 1312, 1470
MvnI CGCG 1 cut(s) 621
MwoI GCNNNNNNNGC 2 cut(s) 435, 746
NdeI CATATG 1 cut(s) 1042
NdeII GATC 5 cut(s) 283, 342, 703, 1110, 1477
NlaIII CATG 5 cut(s) 341, 493, 749, 872, 1266
NlaIV GGNNCC 4 cut(s) 225, 758, 809, 810
NspV TTCGAA 1 cut(s) 1209
PagI TCATGA 1 cut(s) 337
PceI AGGCCT 2 cut(s) 235, 1315
PcsI WCGNNNNNNNCGW 1 cut(s) 1443
PctI GAATGC 2 cut(s) 643, 1161
PdmI GAANNNNTTC 2 cut(s) 885, 909
PfeI GAWTC 2 cut(s) 242, 958
PflMI CCANNNNNTGG 1 cut(s) 490
PfoI TCCNGGA 1 cut(s) 771
PkrI GCNGC 3 cut(s) 431, 496, 1546
PleI GAGTC 2 cut(s) 1233, 1524
PpsI GAGTC 2 cut(s) 1233, 1524
Ppu21I YACGTR 1 cut(s) 1438
PpuMI RGGWCCY 1 cut(s) 1149
Psp124BI GAGCTC 2 cut(s) 414, 1176
Psp5II RGGWCCY 1 cut(s) 1149
Psp6I CCWGG 6 cut(s) 771, 811, 838, 1220, 1310, 1468
PspFI CCCAGC 1 cut(s) 1347
PspGI CCWGG 6 cut(s) 771, 811, 838, 1220, 1310, 1468
PspN4I GGNNCC 4 cut(s) 225, 758, 809, 810
PspOMI GGGCCC 1 cut(s) 807
PspPI GGNCC 7 cut(s) 224, 481, 769, 807, 808, 1149, 1277
PspPPI RGGWCCY 1 cut(s) 1149
PstI CTGCAG 1 cut(s) 1276
PstNI CAGNNNCTG 1 cut(s) 724
PsuI RGATCY 1 cut(s) 703
PvuII CAGCTG 1 cut(s) 1544
RsaI GTAC 3 cut(s) 716, 897, 1381
RsaNI GTAC 3 cut(s) 715, 896, 1380
RseI CAYNNNNRTG 2 cut(s) 255, 873
SacI GAGCTC 2 cut(s) 414, 1176
SaqAI TTAA 5 cut(s) 387, 453, 579, 635, 990
SatI GCNGC 3 cut(s) 430, 495, 1545
Sau3AI GATC 5 cut(s) 283, 342, 703, 1110, 1477
Sau96I GGNCC 7 cut(s) 224, 481, 769, 807, 808, 1149, 1277
SchI GAGTC 2 cut(s) 1234, 1524
ScrFI CCNGG 6 cut(s) 773, 813, 840, 1222, 1312, 1470
SduI GDGCHC 3 cut(s) 414, 811, 1176
SfaNI GCATC 6 cut(s) 247, 259, 447, 668, 844, 1556
SfcI CTRYAG 2 cut(s) 1233, 1272
SfuI TTCGAA 1 cut(s) 1209
SinI GGWCC 4 cut(s) 224, 481, 769, 1149
SmiMI CAYNNNNRTG 2 cut(s) 255, 873
SpeI ACTAGT 2 cut(s) 197, 658
Sse9I AATT 9 cut(s) 184, 289, 349, 485, 789, 970, 1391, 1428, 1501
SseBI AGGCCT 2 cut(s) 235, 1315
SsiI CCGC 2 cut(s) 330, 619
SspI AATATT 1 cut(s) 568
SspMI CTAG 3 cut(s) 105, 198, 659
SstI GAGCTC 2 cut(s) 414, 1176
StuI AGGCCT 2 cut(s) 235, 1315
StyD4I CCNGG 6 cut(s) 771, 811, 838, 1220, 1310, 1468
StyI CCWWGG 1 cut(s) 158
TaaI ACNGT 4 cut(s) 674, 927, 1237, 1384
TaiI ACGT 3 cut(s) 943, 1285, 1440
TaqI TCGA 4 cut(s) 240, 353, 1209, 1239
TasI AATT 9 cut(s) 184, 289, 349, 485, 789, 970, 1391, 1428, 1501
TatI WGTACW 2 cut(s) 895, 1379
TfiI GAWTC 2 cut(s) 242, 958
Tru1I TTAA 5 cut(s) 387, 453, 579, 635, 990
Tru9I TTAA 5 cut(s) 387, 453, 579, 635, 990
TscAI CASTG 2 cut(s) 907, 932
TseI GCWGC 3 cut(s) 429, 494, 1544
TspDTI ATGAA 6 cut(s) 17, 53, 326, 478, 734, 1265
TspRI CASTG 2 cut(s) 907, 932
Van91I CCANNNNNTGG 1 cut(s) 490
VpaK11BI GGWCC 4 cut(s) 224, 481, 769, 1149
XapI RAATTY 5 cut(s) 184, 349, 789, 970, 1501
XcmI CCANNNNNNNNNTGG 1 cut(s) 856
XmnI GAANNNNTTC 2 cut(s) 885, 909
XspI CTAG 3 cut(s) 105, 198, 659
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.