Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003396

Physical Location & Seq

Genomic Coordinates Forward (+)

26041086 .. 26077007

Gene Structure 35922 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00351080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGTATAGAAGGCTATGGGGTCCGGTAAGGCCTCTCAAATCGTTGCATCCCGATGCAAATCCCAGAGGATATTATTCCGATCCCAATTCAGATACCAATGGTTTTATCTTTGTGAGGATACAAGGCGGGTTTCATGAGATCAGGAATTCGATATGTGATCGGGAACTGTTCATCATTGTTCATCATAGTCATGCAAGAGGAGTTGATCATTATAAGCAATTCATCATTGTTCATCATAGTCATGCAAGAGGAGTTGATCATTATAAGCAAGAGATCATTGTAGCCGTGATTGTTGAACTTAAGAGAAGAAGGAGACAATGGAAGAAGAGAAAGAAAAAGAGAAGCATCAAATCCTATCTTTCCATTGCTCCCAAGTTACCTAAGTTGCTAGAAAGGGCCCATGAAAAATCTTTGAAGAAGCTTAAGCATCTGATCGAACCGCGGCCTAAACCTCCTGATTACTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0012505 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

155

Amino Acids

18.45

Weight (kDa)

10.44

Isoelectric Point (pI)

46.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G30300 AT3G30300
fragaria_vesca	FvH4_4g06281 FvH4_6g46210 FvH4_6g46210 FvH4_6g46210
malus_domestica	MD09G1076000.v1.1 MD17G1066700.v1.1
prunus_persica	Prupe.3G248000_v2.0.a1
pyrus_communis	pycom09g00340
rosa_chinensis	RchiOBHm_Chr2g0164661 RchiOBHm_Chr6g0258841 RchiOBHm_Chr6g0258851
rosa_laevigata	RLG00000014579 RLG00000021475
rosa_roxburghii	Rroxscaffold_2G00086400 Rroxscaffold_3G00256120 Rroxscaffold_3G00256130 Rroxscaffold_5G00351080 Rroxscaffold_7G00206110
rosa_rugosa	Rorug02G0509600 Rorug05G0583900.1
rosa_samantha	Rh1AG019300 Rh1CG016900 Rh1DG013900 Rh2AG577500 Rh2BG588700 Rh2CG559500 Rh2DG599300 Rh6AG100300 Rh6CG089300 Rh6DG083600 Rh6DG083700
rosa_wichuraiana	Rw1G001260 Rw2G047960 Rw6G008690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	213, 264
AccII	CGCG	1 cut(s)	442
AciI	CCGC	3 cut(s)	126, 440, 442
AclWI	GGATC	1 cut(s)	74
AcsI	RAATTY	1 cut(s)	145
AflII	CTTAAG	2 cut(s)	299, 422
AgsI	TTSAA	2 cut(s)	296, 415
AluBI	AGCT	1 cut(s)	421
AluI	AGCT	1 cut(s)	421
Alw26I	GTCTC	1 cut(s)	307
AlwI	GGATC	1 cut(s)	74
AoxI	GGCC	3 cut(s)	29, 396, 443
ApaI	GGGCCC	1 cut(s)	400
ApoI	RAATTY	1 cut(s)	145
AspS9I	GGNCC	3 cut(s)	20, 396, 397
AvaII	GGWCC	1 cut(s)	20
BaeGI	GKGCMC	1 cut(s)	400
BanII	GRGCYC	1 cut(s)	400
BceAI	ACGGC	1 cut(s)	269
BciVI	GTATCC	1 cut(s)	111
BclI	TGATCA	2 cut(s)	205, 256
BcoDI	GTCTC	1 cut(s)	307
BfaI	CTAG	1 cut(s)	389
BfrI	CTTAAG	2 cut(s)	299, 422
BfuI	GTATCC	1 cut(s)	111
BisI	GCNGC	1 cut(s)	443
BlsI	GCNGC	1 cut(s)	444
Bme18I	GGWCC	1 cut(s)	20
BmgT120I	GGNCC	3 cut(s)	20, 396, 397
BmiI	GGNNCC	2 cut(s)	21, 398
BmsI	GCATC	4 cut(s)	43, 55, 354, 436
BsaBI	GATNNNNATC	1 cut(s)	57
BsaJI	CCNNGG	1 cut(s)	440
BsaWI	WCCGGW	1 cut(s)	22
Bse3DI	GCAATG	1 cut(s)	363
Bse8I	GATNNNNATC	1 cut(s)	57
BseDI	CCNNGG	1 cut(s)	440
BseGI	GGATG	1 cut(s)	46
BseJI	GATNNNNATC	1 cut(s)	57
BseMI	GCAATG	1 cut(s)	363
BseRI	GAGGAG	2 cut(s)	213, 264
BseSI	GKGCMC	1 cut(s)	400
Bsh1236I	CGCG	1 cut(s)	442
BshFI	GGCC	3 cut(s)	31, 398, 445
BsiSI	CCGG	1 cut(s)	23
BsmAI	GTCTC	1 cut(s)	307
BsnI	GGCC	3 cut(s)	31, 398, 445
Bsp120I	GGGCCC	1 cut(s)	396
Bsp1286I	GDGCHC	1 cut(s)	400
Bsp143I	GATC	7 cut(s)	79, 138, 157, 205, 256, 273, 432
BspACI	CCGC	3 cut(s)	126, 440, 442
BspANI	GGCC	3 cut(s)	31, 398, 445
BspFNI	CGCG	1 cut(s)	442
BspHI	TCATGA	1 cut(s)	133
BspLI	GGNNCC	2 cut(s)	21, 398
BspPI	GGATC	1 cut(s)	74
BspTI	CTTAAG	2 cut(s)	299, 422
BsrDI	GCAATG	1 cut(s)	363
BssECI	CCNNGG	1 cut(s)	440
BssMI	GATC	7 cut(s)	79, 138, 157, 205, 256, 273, 432
Bst4CI	ACNGT	1 cut(s)	168
Bst6I	CTCTTC	1 cut(s)	320
BstAFI	CTTAAG	2 cut(s)	299, 422
BstDEI	CTNAG	1 cut(s)	381
BstDSI	CCRYGG	1 cut(s)	440
BstF5I	GGATG	1 cut(s)	46
BstFNI	CGCG	1 cut(s)	442
BstKTI	GATC	7 cut(s)	82, 141, 160, 208, 259, 276, 435
BstMAI	GTCTC	1 cut(s)	307
BstMBI	GATC	7 cut(s)	79, 138, 157, 205, 256, 273, 432
BstSLI	GKGCMC	1 cut(s)	400
BstUI	CGCG	1 cut(s)	442
BsuI	GTATCC	1 cut(s)	111
BsuRI	GGCC	3 cut(s)	31, 398, 445
BtgI	CCRYGG	1 cut(s)	440
BtsCI	GGATG	1 cut(s)	46
CciI	TCATGA	1 cut(s)	133
Cfr13I	GGNCC	3 cut(s)	20, 396, 397
Cfr42I	CCGCGG	1 cut(s)	443
CviAII	CATG	4 cut(s)	134, 191, 242, 401
CviJI	RGCY	6 cut(s)	13, 31, 284, 398, 421, 445
CviKI_1	RGCY	6 cut(s)	13, 31, 284, 398, 421, 445
DdeI	CTNAG	1 cut(s)	381
DpnI	GATC	7 cut(s)	81, 140, 159, 207, 258, 275, 434
DpnII	GATC	7 cut(s)	79, 138, 157, 205, 256, 273, 432
Eam1104I	CTCTTC	1 cut(s)	320
EarI	CTCTTC	1 cut(s)	320
Eco147I	AGGCCT	1 cut(s)	31
Eco24I	GRGCYC	1 cut(s)	400
Eco47I	GGWCC	1 cut(s)	20
EcoO109I	RGGNCCY	1 cut(s)	396
EcoRI	GAATTC	1 cut(s)	145
EcoT38I	GRGCYC	1 cut(s)	400
FaeI	CATG	4 cut(s)	137, 194, 245, 404
FatI	CATG	4 cut(s)	133, 190, 241, 400
FauI	CCCGC	1 cut(s)	119
FbaI	TGATCA	2 cut(s)	205, 256
Fnu4HI	GCNGC	1 cut(s)	443
FokI	GGATG	1 cut(s)	33
FriOI	GRGCYC	1 cut(s)	400
Fsp4HI	GCNGC	1 cut(s)	443
FspBI	CTAG	1 cut(s)	389
GluI	GCNGC	1 cut(s)	443
HaeIII	GGCC	3 cut(s)	31, 398, 445
HapII	CCGG	1 cut(s)	23
Hin1II	CATG	4 cut(s)	137, 194, 245, 404
HindIII	AAGCTT	1 cut(s)	419
HpaII	CCGG	1 cut(s)	23
Hpy188I	TCNGA	3 cut(s)	79, 91, 432
Hpy188III	TCNNGA	6 cut(s)	50, 134, 142, 161, 455, 465
HpyAV	CCTTC	2 cut(s)	3, 303
HpyCH4III	ACNGT	1 cut(s)	168
HpyCH4V	TGCA	4 cut(s)	46, 56, 194, 245
HpyF3I	CTNAG	1 cut(s)	381
Hsp92II	CATG	4 cut(s)	137, 194, 245, 404
Ksp22I	TGATCA	2 cut(s)	205, 256
KspI	CCGCGG	1 cut(s)	443
Kzo9I	GATC	7 cut(s)	79, 138, 157, 205, 256, 273, 432
LmnI	GCTCC	1 cut(s)	373
LpnPI	CCDG	3 cut(s)	36, 76, 127
LweI	GCATC	4 cut(s)	43, 55, 354, 436
MaeI	CTAG	1 cut(s)	389
MaeIII	GTNAC	1 cut(s)	375
MalI	GATC	7 cut(s)	81, 140, 159, 207, 258, 275, 434
MboI	GATC	7 cut(s)	79, 138, 157, 205, 256, 273, 432
MboII	GAAGA	4 cut(s)	318, 334, 337, 427
MhlI	GDGCHC	1 cut(s)	400
MluCI	AATT	3 cut(s)	85, 145, 218
MnlI	CCTC	6 cut(s)	42, 59, 108, 191, 242, 462
MseI	TTAA	2 cut(s)	300, 423
MslI	CAYNNNNRTG	3 cut(s)	51, 189, 240
MspA1I	CMGCKG	1 cut(s)	442
MspCI	CTTAAG	2 cut(s)	299, 422
MspI	CCGG	1 cut(s)	23
MvnI	CGCG	1 cut(s)	442
NdeII	GATC	7 cut(s)	79, 138, 157, 205, 256, 273, 432
NlaIII	CATG	4 cut(s)	137, 194, 245, 404
NlaIV	GGNNCC	2 cut(s)	21, 398
PagI	TCATGA	1 cut(s)	133
PceI	AGGCCT	1 cut(s)	31
PkrI	GCNGC	1 cut(s)	444
PsiI	TTATAA	2 cut(s)	213, 264
PspN4I	GGNNCC	2 cut(s)	21, 398
PspOMI	GGGCCC	1 cut(s)	396
PspPI	GGNCC	3 cut(s)	20, 396, 397
RseI	CAYNNNNRTG	3 cut(s)	51, 189, 240
SacII	CCGCGG	1 cut(s)	443
SaqAI	TTAA	2 cut(s)	300, 423
SatI	GCNGC	1 cut(s)	443
Sau3AI	GATC	7 cut(s)	79, 138, 157, 205, 256, 273, 432
Sau96I	GGNCC	3 cut(s)	20, 396, 397
SduI	GDGCHC	1 cut(s)	400
SetI	ASST	3 cut(s)	382, 423, 454
SfaNI	GCATC	4 cut(s)	43, 55, 354, 436
Sfr303I	CCGCGG	1 cut(s)	443
SgrBI	CCGCGG	1 cut(s)	443
SinI	GGWCC	1 cut(s)	20
SmiMI	CAYNNNNRTG	3 cut(s)	51, 189, 240
SmlI	CTYRAG	2 cut(s)	299, 422
SmoI	CTYRAG	2 cut(s)	299, 422
Sse9I	AATT	3 cut(s)	85, 145, 218
SseBI	AGGCCT	1 cut(s)	31
SsiI	CCGC	3 cut(s)	126, 440, 442
SspMI	CTAG	1 cut(s)	389
StuI	AGGCCT	1 cut(s)	31
TaaI	ACNGT	1 cut(s)	168
TaqI	TCGA	2 cut(s)	149, 435
TasI	AATT	3 cut(s)	85, 145, 218
TauI	GCSGC	1 cut(s)	445
Tru1I	TTAA	2 cut(s)	300, 423
Tru9I	TTAA	2 cut(s)	300, 423
TspDTI	ATGAA	6 cut(s)	122, 160, 170, 211, 221, 417
Vha464I	CTTAAG	2 cut(s)	299, 422
VpaK11BI	GGWCC	1 cut(s)	20
XapI	RAATTY	1 cut(s)	145
XspI	CTAG	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.