Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003396

Physical Location & Seq

Genomic Coordinates Reverse (-)

50533232 .. 50533993

Gene Structure 762 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00256130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGTGGAAGTCTGTAGCAAATTGGTTCGGAAGCTACCTCTACTTTTCCAAGGCTACTTTATGCATCCGGGGTTTGGTCTTCAGCCATAGCTTCGTAAATCATTTGGTAGTGTCTGCCTTGATGGCGTACGTGCAGAATATTATATCGGAGCCTTCAATGGCTGCTGTTGCTACAAATATTATAAATGGGGAAGAACTAGGAATCTGGCTATTTCTCTGTTTGTTCACTTTTTACTGGCTAGATTTACTGAGGAGGGGCGTTTCAGAGTTCCATTCTTCAATCACAATCTTCCCAAGGCGAACCATTGGTGAAAGCTTGAATTTTTCCAAGACTAGTGCAATGTATAGAAGGCTATGGGGTCCGGTAAGGCCTCTCGAATCGTTGCATCCTGATGCAAATCCCAGAGGATATTATTCCGATCCCAATTCAGATACCAATGGTTTTATCTTTGTGAGGATACAAGGCGGGTTTCATGAGATCAGGAATTCGATATGTGATGTAGTTGTGATTGCTCGGTTTCTTAATACAACATTAGTTATTCCTGAGCTCCAATCAACCACAAGCAGCAAGGGCATCAGCTCTCAGTTTAAGAGTTTTGCCTATCTCTACAATGAGGACCAATTCATGGCAGCTTTATCAAAAGAATATTCCCTCGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0012505 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

219

Amino Acids

24.92

Weight (kDa)

8.43

Isoelectric Point (pI)

39.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
O-FucT	PF10250	148 - 219	1.6e-16	GDP-fucose protein O-fucosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G30300 AT3G30300
fragaria_vesca	FvH4_4g06281 FvH4_6g46210 FvH4_6g46210 FvH4_6g46210
malus_domestica	MD09G1076000.v1.1 MD17G1066700.v1.1
prunus_persica	Prupe.3G248000_v2.0.a1
pyrus_communis	pycom09g00340
rosa_chinensis	RchiOBHm_Chr2g0164661 RchiOBHm_Chr6g0258841 RchiOBHm_Chr6g0258851
rosa_laevigata	RLG00000014579 RLG00000021475
rosa_roxburghii	Rroxscaffold_2G00086400 Rroxscaffold_3G00256120 Rroxscaffold_3G00256130 Rroxscaffold_5G00351080 Rroxscaffold_7G00206110
rosa_rugosa	Rorug02G0509600 Rorug05G0583900.1
rosa_samantha	Rh1AG019300 Rh1CG016900 Rh1DG013900 Rh2AG577500 Rh2BG588700 Rh2CG559500 Rh2DG599300 Rh6AG100300 Rh6CG089300 Rh6DG083600 Rh6DG083700
rosa_wichuraiana	Rw1G001260 Rw2G047960 Rw6G008690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	182
AccB7I	CCANNNNNTGG	1 cut(s)	625
AciI	CCGC	1 cut(s)	465
AclWI	GGATC	1 cut(s)	413
AcsI	RAATTY	2 cut(s)	319, 484
AcuI	CTGAAG	1 cut(s)	64
AfaI	GTAC	1 cut(s)	128
AfiI	CCNNNNNNNGG	2 cut(s)	73, 625
AgsI	TTSAA	3 cut(s)	156, 279, 319
AhlI	ACTAGT	1 cut(s)	332
AluBI	AGCT	6 cut(s)	33, 90, 315, 547, 579, 632
AluI	AGCT	6 cut(s)	33, 90, 315, 547, 579, 632
Alw21I	GWGCWC	1 cut(s)	549
AlwI	GGATC	1 cut(s)	413
AoxI	GGCC	1 cut(s)	368
ApeKI	GCWGC	3 cut(s)	161, 564, 629
ApoI	RAATTY	2 cut(s)	319, 484
AspS9I	GGNCC	2 cut(s)	359, 616
AsuC2I	CCSGG	1 cut(s)	68
AsuHPI	GGTGA	1 cut(s)	320
AvaII	GGWCC	2 cut(s)	359, 616
BanII	GRGCYC	1 cut(s)	549
BbsI	GAAGAC	1 cut(s)	70
Bbv12I	GWGCWC	1 cut(s)	549
BbvI	GCAGC	3 cut(s)	148, 576, 641
BccI	CCATC	1 cut(s)	115
BciVI	GTATCC	1 cut(s)	450
BcnI	CCSGG	1 cut(s)	68
BcuI	ACTAGT	1 cut(s)	332
BfaI	CTAG	3 cut(s)	197, 239, 333
BfmI	CTRYAG	1 cut(s)	12
BfuI	GTATCC	1 cut(s)	450
BglI	GCCNNNNNGGC	1 cut(s)	122
BisI	GCNGC	3 cut(s)	162, 565, 630
BlsI	GCNGC	3 cut(s)	163, 566, 631
Bme1390I	CCNGG	1 cut(s)	68
Bme18I	GGWCC	2 cut(s)	359, 616
BmgT120I	GGNCC	2 cut(s)	359, 616
BmiI	GGNNCC	2 cut(s)	150, 360
BmrFI	CCNGG	1 cut(s)	68
BmsI	GCATC	4 cut(s)	72, 382, 394, 582
BpiI	GAAGAC	1 cut(s)	70
Bpu10I	CCTNAGC	1 cut(s)	543
BpuMI	CCSGG	1 cut(s)	68
BsaAI	YACGTR	1 cut(s)	130
BsaBI	GATNNNNATC	1 cut(s)	396
BsaJI	CCNNGG	3 cut(s)	48, 67, 293
BsaWI	WCCGGW	1 cut(s)	361
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 625
Bse1I	ACTGG	1 cut(s)	239
Bse3DI	GCAATG	1 cut(s)	345
Bse8I	GATNNNNATC	1 cut(s)	396
BseDI	CCNNGG	3 cut(s)	48, 67, 293
BseGI	GGATG	2 cut(s)	63, 385
BseJI	GATNNNNATC	1 cut(s)	396
BseLI	CCNNNNNNNGG	2 cut(s)	73, 625
BseMI	GCAATG	1 cut(s)	345
BseMII	CTCAG	3 cut(s)	239, 534, 596
BseNI	ACTGG	1 cut(s)	239
BseRI	GAGGAG	1 cut(s)	265
BseXI	GCAGC	3 cut(s)	148, 576, 641
BsgI	GTGCAG	1 cut(s)	152
BshFI	GGCC	1 cut(s)	370
BsiHKAI	GWGCWC	1 cut(s)	549
BsiSI	CCGG	2 cut(s)	67, 362
BsiWI	CGTACG	1 cut(s)	126
BslI	CCNNNNNNNGG	2 cut(s)	73, 625
BsnI	GGCC	1 cut(s)	370
Bsp1286I	GDGCHC	1 cut(s)	549
Bsp143I	GATC	2 cut(s)	418, 477
BspACI	CCGC	1 cut(s)	465
BspANI	GGCC	1 cut(s)	370
BspCNI	CTCAG	3 cut(s)	240, 535, 595
BspHI	TCATGA	1 cut(s)	472
BspLI	GGNNCC	2 cut(s)	150, 360
BspPI	GGATC	1 cut(s)	413
BsrDI	GCAATG	1 cut(s)	345
BsrI	ACTGG	1 cut(s)	239
BssECI	CCNNGG	3 cut(s)	48, 67, 293
BssMI	GATC	2 cut(s)	418, 477
BssT1I	CCWWGG	2 cut(s)	48, 293
BstBAI	YACGTR	1 cut(s)	130
BstDEI	CTNAG	3 cut(s)	248, 543, 582
BstF5I	GGATG	2 cut(s)	63, 385
BstKTI	GATC	2 cut(s)	421, 480
BstMBI	GATC	2 cut(s)	418, 477
BstMWI	GCNNNNNNNGC	3 cut(s)	122, 167, 570
BstSCI	CCNGG	1 cut(s)	66
BstSFI	CTRYAG	1 cut(s)	12
BstV1I	GCAGC	3 cut(s)	148, 576, 641
BstV2I	GAAGAC	1 cut(s)	70
BsuI	GTATCC	1 cut(s)	450
BsuRI	GGCC	1 cut(s)	370
BtsCI	GGATG	2 cut(s)	63, 385
CciI	TCATGA	1 cut(s)	472
Cfr13I	GGNCC	2 cut(s)	359, 616
Csp6I	GTAC	1 cut(s)	127
CviAII	CATG	2 cut(s)	473, 625
CviQI	GTAC	1 cut(s)	127
DdeI	CTNAG	3 cut(s)	248, 543, 582
DpnI	GATC	2 cut(s)	420, 479
DpnII	GATC	2 cut(s)	418, 477
Ecl136II	GAGCTC	1 cut(s)	547
Eco130I	CCWWGG	2 cut(s)	48, 293
Eco147I	AGGCCT	1 cut(s)	370
Eco24I	GRGCYC	1 cut(s)	549
Eco47I	GGWCC	2 cut(s)	359, 616
Eco53kI	GAGCTC	1 cut(s)	547
Eco57I	CTGAAG	1 cut(s)	64
EcoICRI	GAGCTC	1 cut(s)	547
EcoRI	GAATTC	1 cut(s)	484
EcoT14I	CCWWGG	2 cut(s)	48, 293
EcoT22I	ATGCAT	1 cut(s)	65
EcoT38I	GRGCYC	1 cut(s)	549
ErhI	CCWWGG	2 cut(s)	48, 293
FaeI	CATG	2 cut(s)	476, 628
FaiI	YATR	9 cut(s)	61, 87, 143, 182, 345, 355, 474, 493, 626
FatI	CATG	2 cut(s)	472, 624
FauI	CCCGC	1 cut(s)	458
Fnu4HI	GCNGC	3 cut(s)	162, 565, 630
FokI	GGATG	2 cut(s)	50, 372
FriOI	GRGCYC	1 cut(s)	549
Fsp4HI	GCNGC	3 cut(s)	162, 565, 630
FspBI	CTAG	3 cut(s)	197, 239, 333
GluI	GCNGC	3 cut(s)	162, 565, 630
HaeIII	GGCC	1 cut(s)	370
HapII	CCGG	2 cut(s)	67, 362
Hin1II	CATG	2 cut(s)	476, 628
HindIII	AAGCTT	1 cut(s)	313
HinfI	GANTC	2 cut(s)	201, 377
HpaII	CCGG	2 cut(s)	67, 362
HphI	GGTGA	1 cut(s)	320
Hpy166II	GTNNAC	1 cut(s)	225
Hpy188I	TCNGA	5 cut(s)	29, 148, 265, 418, 430
Hpy188III	TCNNGA	5 cut(s)	374, 389, 473, 481, 542
Hpy8I	GTNNAC	1 cut(s)	225
HpyAV	CCTTC	2 cut(s)	162, 342
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	5 cut(s)	63, 133, 338, 385, 395
HpyF10VI	GCNNNNNNNGC	3 cut(s)	122, 167, 570
HpyF3I	CTNAG	3 cut(s)	248, 543, 582
HpySE526I	ACGT	1 cut(s)	129
Hsp92II	CATG	2 cut(s)	476, 628
Kzo9I	GATC	2 cut(s)	418, 477
LmnI	GCTCC	2 cut(s)	148, 552
LpnPI	CCDG	8 cut(s)	80, 190, 220, 375, 402, 415, 466, 555
Lsp1109I	GCAGC	3 cut(s)	148, 576, 641
LweI	GCATC	4 cut(s)	72, 382, 394, 582
MaeI	CTAG	3 cut(s)	197, 239, 333
MaeII	ACGT	1 cut(s)	129
MalI	GATC	2 cut(s)	420, 479
MboI	GATC	2 cut(s)	418, 477
MboII	GAAGA	4 cut(s)	70, 203, 267, 280
MhlI	GDGCHC	1 cut(s)	549
MluCI	AATT	5 cut(s)	19, 319, 424, 484, 620
MnlI	CCTC	7 cut(s)	47, 243, 246, 381, 398, 447, 607
Mph1103I	ATGCAT	1 cut(s)	65
MseI	TTAA	3 cut(s)	522, 588, 658
MslI	CAYNNNNRTG	1 cut(s)	390
MspI	CCGG	2 cut(s)	67, 362
MspR9I	CCNGG	1 cut(s)	68
MwoI	GCNNNNNNNGC	3 cut(s)	122, 167, 570
NciI	CCSGG	1 cut(s)	68
NdeII	GATC	2 cut(s)	418, 477
NlaIII	CATG	2 cut(s)	476, 628
NlaIV	GGNNCC	2 cut(s)	150, 360
NsiI	ATGCAT	1 cut(s)	65
PagI	TCATGA	1 cut(s)	472
PceI	AGGCCT	1 cut(s)	370
PfeI	GAWTC	2 cut(s)	201, 377
Pfl23II	CGTACG	1 cut(s)	126
PflMI	CCANNNNNTGG	1 cut(s)	625
PkrI	GCNGC	3 cut(s)	163, 566, 631
Ppu21I	YACGTR	1 cut(s)	130
PsiI	TTATAA	1 cut(s)	182
Psp124BI	GAGCTC	1 cut(s)	549
PspLI	CGTACG	1 cut(s)	126
PspN4I	GGNNCC	2 cut(s)	150, 360
PspPI	GGNCC	2 cut(s)	359, 616
RsaI	GTAC	1 cut(s)	128
RsaNI	GTAC	1 cut(s)	127
RseI	CAYNNNNRTG	1 cut(s)	390
SacI	GAGCTC	1 cut(s)	549
SaqAI	TTAA	3 cut(s)	522, 588, 658
SatI	GCNGC	3 cut(s)	162, 565, 630
Sau3AI	GATC	2 cut(s)	418, 477
Sau96I	GGNCC	2 cut(s)	359, 616
ScrFI	CCNGG	1 cut(s)	68
SduI	GDGCHC	1 cut(s)	549
SetI	ASST	8 cut(s)	35, 39, 92, 132, 317, 549, 581, 634
SfaNI	GCATC	4 cut(s)	72, 382, 394, 582
SfcI	CTRYAG	1 cut(s)	12
SinI	GGWCC	2 cut(s)	359, 616
SmiMI	CAYNNNNRTG	1 cut(s)	390
SpeI	ACTAGT	1 cut(s)	332
Sse9I	AATT	5 cut(s)	19, 319, 424, 484, 620
SseBI	AGGCCT	1 cut(s)	370
SsiI	CCGC	1 cut(s)	465
SspI	AATATT	3 cut(s)	139, 178, 647
SspMI	CTAG	3 cut(s)	197, 239, 333
SstI	GAGCTC	1 cut(s)	549
StuI	AGGCCT	1 cut(s)	370
StyD4I	CCNGG	1 cut(s)	66
StyI	CCWWGG	2 cut(s)	48, 293
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	2 cut(s)	375, 488
TasI	AATT	5 cut(s)	19, 319, 424, 484, 620
TfiI	GAWTC	2 cut(s)	201, 377
Tru1I	TTAA	3 cut(s)	522, 588, 658
Tru9I	TTAA	3 cut(s)	522, 588, 658
TseI	GCWGC	3 cut(s)	161, 564, 629
TspDTI	ATGAA	2 cut(s)	461, 613
Van91I	CCANNNNNTGG	1 cut(s)	625
VpaK11BI	GGWCC	2 cut(s)	359, 616
XapI	RAATTY	2 cut(s)	319, 484
XspI	CTAG	3 cut(s)	197, 239, 333
Zsp2I	ATGCAT	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.