No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g11882 FvH4_6g30062 |
| rosa_chinensis | RchiOBHm_Chr2g0117601 RchiOBHm_Chr2g0126381 RchiOBHm_Chr2g0131431 |
| rosa_multiflora | Rmu_sc0006695.1_g000083 Rmu_sc0038051.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00056080 Rroxscaffold_3G00246990 |
| rosa_samantha | Rh2BG328300 Rh5BG101500 Rh6AG125000 Rh6CG200400 |
| rosa_wichuraiana | Rw0G009450 Rw2G022640 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 3 cut(s) | 217, 278, 291 |
| AcsI | RAATTY | 1 cut(s) | 135 |
| AcuI | CTGAAG | 1 cut(s) | 274 |
| AfaI | GTAC | 1 cut(s) | 400 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 79 |
| AgsI | TTSAA | 1 cut(s) | 376 |
| AjnI | CCWGG | 2 cut(s) | 18, 205 |
| AleI | CACNNNNGTG | 1 cut(s) | 73 |
| AluBI | AGCT | 3 cut(s) | 249, 318, 406 |
| AluI | AGCT | 3 cut(s) | 249, 318, 406 |
| AlwI | GGATC | 3 cut(s) | 217, 278, 291 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 212 |
| AoxI | GGCC | 4 cut(s) | 21, 199, 259, 368 |
| ApoI | RAATTY | 1 cut(s) | 135 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 435 |
| AsuC2I | CCSGG | 1 cut(s) | 73 |
| AsuHPI | GGTGA | 2 cut(s) | 101, 322 |
| BamHI | GGATCC | 1 cut(s) | 283 |
| BccI | CCATC | 1 cut(s) | 349 |
| BceAI | ACGGC | 1 cut(s) | 57 |
| BciT130I | CCWGG | 2 cut(s) | 20, 207 |
| BcnI | CCSGG | 1 cut(s) | 73 |
| BfaI | CTAG | 1 cut(s) | 132 |
| BfmI | CTRYAG | 1 cut(s) | 50 |
| Bme1390I | CCNGG | 3 cut(s) | 20, 73, 207 |
| BmiI | GGNNCC | 1 cut(s) | 285 |
| BmrFI | CCNGG | 3 cut(s) | 20, 73, 207 |
| BpuMI | CCSGG | 1 cut(s) | 73 |
| BsaJI | CCNNGG | 1 cut(s) | 71 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 79 |
| BseBI | CCWGG | 2 cut(s) | 20, 207 |
| BseDI | CCNNGG | 1 cut(s) | 71 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 79 |
| Bsh1285I | CGRYCG | 1 cut(s) | 177 |
| BshFI | GGCC | 4 cut(s) | 23, 201, 261, 370 |
| BsiEI | CGRYCG | 1 cut(s) | 177 |
| BsiSI | CCGG | 1 cut(s) | 73 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 79 |
| BsnI | GGCC | 4 cut(s) | 23, 201, 261, 370 |
| Bsp143I | GATC | 3 cut(s) | 84, 209, 283 |
| BspANI | GGCC | 4 cut(s) | 23, 201, 261, 370 |
| BspLI | GGNNCC | 1 cut(s) | 285 |
| BspPI | GGATC | 3 cut(s) | 217, 278, 291 |
| BssECI | CCNNGG | 1 cut(s) | 71 |
| BssMI | GATC | 3 cut(s) | 84, 209, 283 |
| Bst2UI | CCWGG | 2 cut(s) | 20, 207 |
| Bst4CI | ACNGT | 2 cut(s) | 54, 298 |
| Bst6I | CTCTTC | 1 cut(s) | 164 |
| BstEII | GGTNACC | 1 cut(s) | 328 |
| BstKTI | GATC | 3 cut(s) | 87, 212, 286 |
| BstMBI | GATC | 3 cut(s) | 84, 209, 283 |
| BstMCI | CGRYCG | 1 cut(s) | 177 |
| BstNI | CCWGG | 2 cut(s) | 20, 207 |
| BstPI | GGTNACC | 1 cut(s) | 328 |
| BstSCI | CCNGG | 3 cut(s) | 18, 71, 205 |
| BstSFI | CTRYAG | 1 cut(s) | 50 |
| BstX2I | RGATCY | 2 cut(s) | 209, 283 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 75 |
| BstYI | RGATCY | 2 cut(s) | 209, 283 |
| BsuRI | GGCC | 4 cut(s) | 23, 201, 261, 370 |
| CaiI | CAGNNNCTG | 1 cut(s) | 212 |
| CseI | GACGC | 1 cut(s) | 188 |
| Csp6I | GTAC | 1 cut(s) | 399 |
| CviAII | CATG | 1 cut(s) | 468 |
| CviJI | RGCY | 9 cut(s) | 18, 23, 49, 201, 249, 261, 318, 370, 406 |
| CviKI_1 | RGCY | 9 cut(s) | 18, 23, 49, 201, 249, 261, 318, 370, 406 |
| CviQI | GTAC | 1 cut(s) | 399 |
| DpnI | GATC | 3 cut(s) | 86, 211, 285 |
| DpnII | GATC | 3 cut(s) | 84, 209, 283 |
| Eam1104I | CTCTTC | 1 cut(s) | 164 |
| EarI | CTCTTC | 1 cut(s) | 164 |
| Eco57I | CTGAAG | 1 cut(s) | 274 |
| Eco91I | GGTNACC | 1 cut(s) | 328 |
| EcoO65I | GGTNACC | 1 cut(s) | 328 |
| EcoRI | GAATTC | 1 cut(s) | 135 |
| EcoRII | CCWGG | 2 cut(s) | 18, 205 |
| FaeI | CATG | 1 cut(s) | 471 |
| FaiI | YATR | 7 cut(s) | 57, 147, 191, 417, 441, 450, 469 |
| FatI | CATG | 1 cut(s) | 467 |
| FspBI | CTAG | 1 cut(s) | 132 |
| HaeIII | GGCC | 4 cut(s) | 23, 201, 261, 370 |
| HapII | CCGG | 1 cut(s) | 73 |
| HgaI | GACGC | 1 cut(s) | 188 |
| Hin1II | CATG | 1 cut(s) | 471 |
| HinfI | GANTC | 4 cut(s) | 28, 64, 103, 376 |
| HpaII | CCGG | 1 cut(s) | 73 |
| HphI | GGTGA | 2 cut(s) | 101, 322 |
| Hpy166II | GTNNAC | 2 cut(s) | 68, 171 |
| Hpy188I | TCNGA | 4 cut(s) | 8, 36, 82, 214 |
| Hpy188III | TCNNGA | 1 cut(s) | 292 |
| Hpy8I | GTNNAC | 2 cut(s) | 68, 171 |
| Hpy99I | CGWCG | 1 cut(s) | 182 |
| HpyAV | CCTTC | 3 cut(s) | 212, 230, 298 |
| HpyCH4III | ACNGT | 2 cut(s) | 54, 298 |
| HpyCH4V | TGCA | 1 cut(s) | 419 |
| Hsp92II | CATG | 1 cut(s) | 471 |
| Kzo9I | GATC | 3 cut(s) | 84, 209, 283 |
| LmnI | GCTCC | 1 cut(s) | 225 |
| MaeI | CTAG | 1 cut(s) | 132 |
| MaeIII | GTNAC | 1 cut(s) | 328 |
| MalI | GATC | 3 cut(s) | 86, 211, 285 |
| MboI | GATC | 3 cut(s) | 84, 209, 283 |
| MboII | GAAGA | 1 cut(s) | 151 |
| MflI | RGATCY | 2 cut(s) | 209, 283 |
| MluCI | AATT | 2 cut(s) | 135, 431 |
| MlyI | GAGTC | 3 cut(s) | 22, 73, 112 |
| MmeI | TCCRAC | 1 cut(s) | 60 |
| MnlI | CCTC | 4 cut(s) | 30, 117, 287, 333 |
| MroXI | GAANNNNTTC | 1 cut(s) | 435 |
| MslI | CAYNNNNRTG | 1 cut(s) | 73 |
| MspI | CCGG | 1 cut(s) | 73 |
| MspR9I | CCNGG | 3 cut(s) | 20, 73, 207 |
| MvaI | CCWGG | 2 cut(s) | 20, 207 |
| NciI | CCSGG | 1 cut(s) | 73 |
| NdeII | GATC | 3 cut(s) | 84, 209, 283 |
| NlaIII | CATG | 1 cut(s) | 471 |
| NlaIV | GGNNCC | 1 cut(s) | 285 |
| NmuCI | GTSAC | 1 cut(s) | 328 |
| OliI | CACNNNNGTG | 1 cut(s) | 73 |
| PdmI | GAANNNNTTC | 1 cut(s) | 435 |
| PfeI | GAWTC | 1 cut(s) | 376 |
| PfoI | TCCNGGA | 1 cut(s) | 205 |
| PleI | GAGTC | 3 cut(s) | 22, 72, 111 |
| PpsI | GAGTC | 3 cut(s) | 22, 72, 111 |
| Psp6I | CCWGG | 2 cut(s) | 18, 205 |
| PspEI | GGTNACC | 1 cut(s) | 328 |
| PspGI | CCWGG | 2 cut(s) | 18, 205 |
| PspN4I | GGNNCC | 1 cut(s) | 285 |
| PstNI | CAGNNNCTG | 1 cut(s) | 212 |
| PsuI | RGATCY | 2 cut(s) | 209, 283 |
| RsaI | GTAC | 1 cut(s) | 400 |
| RsaNI | GTAC | 1 cut(s) | 399 |
| RseI | CAYNNNNRTG | 1 cut(s) | 73 |
| Sau3AI | GATC | 3 cut(s) | 84, 209, 283 |
| SchI | GAGTC | 3 cut(s) | 22, 73, 112 |
| ScrFI | CCNGG | 3 cut(s) | 20, 73, 207 |
| SetI | ASST | 4 cut(s) | 251, 320, 408, 460 |
| SfcI | CTRYAG | 1 cut(s) | 50 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 73 |
| Sse9I | AATT | 2 cut(s) | 135, 431 |
| SspI | AATATT | 1 cut(s) | 423 |
| SspMI | CTAG | 1 cut(s) | 132 |
| StyD4I | CCNGG | 3 cut(s) | 18, 71, 205 |
| TaaI | ACNGT | 2 cut(s) | 54, 298 |
| TaqII | GACCGA | 1 cut(s) | 191 |
| TasI | AATT | 2 cut(s) | 135, 431 |
| TfiI | GAWTC | 1 cut(s) | 376 |
| TseFI | GTSAC | 1 cut(s) | 328 |
| Tsp45I | GTSAC | 1 cut(s) | 328 |
| TspDTI | ATGAA | 2 cut(s) | 249, 428 |
| XapI | RAATTY | 1 cut(s) | 135 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 213, 322 |
| XmnI | GAANNNNTTC | 1 cut(s) | 435 |
| XspI | CTAG | 1 cut(s) | 132 |