Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0016304

Physical Location & Seq

Genomic Coordinates Reverse (-)

33473993 .. 33488974

Gene Structure 14982 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG200400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGAAAATGGTGAGTTGGTATTGCCTTCATTTGAGTTTCGCCATGACTATGATGACCCATTTAGGCCAAGACCTTCCAATACTGAGTCGAAATAGTGAGTTCCATGGGACCTTGGTTGGATTGCATTCTAACAAATTGGAATCACCCGAGCTGAAGACCCGTATTGAGGCTTTGACAGAAATACGGGAGAGAGCTGCACTGAAAGCTAACCAAAAGCGTTTCCAAGAAGAGAGGCATAACTTTAGGCTTTATACACTGAAAAATAATGAAGTGCTTGCTAAGGAGATCACAGAGCATGATGAAGCGGCTTTCATGAGCTTTGATGTGTTTGTTGACAGGCGGCAGACGTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

117

Amino Acids

13.76

Weight (kDa)

7.02

Isoelectric Point (pI)

53.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016304)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g11882 FvH4_6g30062
rosa_chinensis	RchiOBHm_Chr2g0117601 RchiOBHm_Chr2g0126381 RchiOBHm_Chr2g0131431
rosa_multiflora	Rmu_sc0006695.1_g000083 Rmu_sc0038051.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056080 Rroxscaffold_3G00246990
rosa_samantha	Rh2BG328300 Rh5BG101500 Rh6AG125000 Rh6CG200400
rosa_wichuraiana	Rw0G009450 Rw2G022640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	350
AciI	CCGC	2 cut(s)	305, 340
AcuI	CTGAAG	1 cut(s)	173
AcyI	GRCGYC	1 cut(s)	347
AfiI	CCNNNNNNNGG	1 cut(s)	166
AluBI	AGCT	4 cut(s)	151, 194, 206, 318
AluI	AGCT	4 cut(s)	151, 194, 206, 318
Ama87I	CYCGRG	1 cut(s)	146
AoxI	GGCC	1 cut(s)	64
ApeKI	GCWGC	1 cut(s)	194
AspS9I	GGNCC	1 cut(s)	108
AsuHPI	GGTGA	2 cut(s)	22, 135
AvaI	CYCGRG	1 cut(s)	146
AvaII	GGWCC	1 cut(s)	108
BbsI	GAAGAC	1 cut(s)	161
BbvI	GCAGC	1 cut(s)	181
BisI	GCNGC	3 cut(s)	195, 306, 341
BlsI	GCNGC	3 cut(s)	196, 307, 342
Bme18I	GGWCC	1 cut(s)	108
BmeT110I	CYCGRG	1 cut(s)	146
BmgT120I	GGNCC	1 cut(s)	108
BmiI	GGNNCC	1 cut(s)	109
BpiI	GAAGAC	1 cut(s)	161
Bpu10I	CCTNAGC	1 cut(s)	279
BsaHI	GRCGYC	1 cut(s)	347
BsaJI	CCNNGG	2 cut(s)	103, 111
Bsc4I	CCNNNNNNNGG	1 cut(s)	166
BseDI	CCNNGG	2 cut(s)	103, 111
BseLI	CCNNNNNNNGG	1 cut(s)	166
BseMII	CTCAG	1 cut(s)	74
BseXI	GCAGC	1 cut(s)	181
BsgI	GTGCAG	1 cut(s)	180
BshFI	GGCC	1 cut(s)	66
BsiHKCI	CYCGRG	1 cut(s)	146
BslFI	GGGAC	1 cut(s)	121
BslI	CCNNNNNNNGG	1 cut(s)	166
BsmFI	GGGAC	1 cut(s)	121
BsmI	GAATGC	1 cut(s)	124
BsnI	GGCC	1 cut(s)	66
BsoBI	CYCGRG	1 cut(s)	146
Bsp143I	GATC	1 cut(s)	285
Bsp19I	CCATGG	1 cut(s)	103
BspACI	CCGC	2 cut(s)	305, 340
BspANI	GGCC	1 cut(s)	66
BspCNI	CTCAG	1 cut(s)	75
BspHI	TCATGA	1 cut(s)	312
BspLI	GGNNCC	1 cut(s)	109
BssECI	CCNNGG	2 cut(s)	103, 111
BssMI	GATC	1 cut(s)	285
BssNI	GRCGYC	1 cut(s)	347
BssT1I	CCWWGG	2 cut(s)	103, 111
Bst6I	CTCTTC	1 cut(s)	222
BstACI	GRCGYC	1 cut(s)	347
BstC8I	GCNNGC	1 cut(s)	276
BstDEI	CTNAG	2 cut(s)	83, 279
BstDSI	CCRYGG	1 cut(s)	103
BstKTI	GATC	1 cut(s)	288
BstMBI	GATC	1 cut(s)	285
BstMWI	GCNNNNNNNGC	1 cut(s)	203
BstV1I	GCAGC	1 cut(s)	181
BstV2I	GAAGAC	1 cut(s)	161
BsuRI	GGCC	1 cut(s)	66
BtgI	CCRYGG	1 cut(s)	103
BtsIMutI	CAGTG	2 cut(s)	197, 254
Cac8I	GCNNGC	1 cut(s)	276
CciI	TCATGA	1 cut(s)	312
Cfr13I	GGNCC	1 cut(s)	108
CviAII	CATG	4 cut(s)	43, 104, 296, 313
CviJI	RGCY	8 cut(s)	66, 151, 170, 194, 206, 247, 308, 318
CviKI_1	RGCY	8 cut(s)	66, 151, 170, 194, 206, 247, 308, 318
DdeI	CTNAG	2 cut(s)	83, 279
DpnI	GATC	1 cut(s)	287
DpnII	GATC	1 cut(s)	285
Eam1104I	CTCTTC	1 cut(s)	222
EarI	CTCTTC	1 cut(s)	222
Eco130I	CCWWGG	2 cut(s)	103, 111
Eco47I	GGWCC	1 cut(s)	108
Eco57I	CTGAAG	1 cut(s)	173
Eco88I	CYCGRG	1 cut(s)	146
EcoO109I	RGGNCCY	1 cut(s)	108
EcoT14I	CCWWGG	2 cut(s)	103, 111
ErhI	CCWWGG	2 cut(s)	103, 111
FaeI	CATG	4 cut(s)	46, 107, 299, 316
FaiI	YATR	7 cut(s)	44, 50, 105, 237, 252, 297, 314
FaqI	GGGAC	1 cut(s)	121
FatI	CATG	4 cut(s)	42, 103, 295, 312
Fnu4HI	GCNGC	3 cut(s)	195, 306, 341
Fsp4HI	GCNGC	3 cut(s)	195, 306, 341
GluI	GCNGC	3 cut(s)	195, 306, 341
HaeIII	GGCC	1 cut(s)	66
Hin1I	GRCGYC	1 cut(s)	347
Hin1II	CATG	4 cut(s)	46, 107, 299, 316
HincII	GTYRAC	1 cut(s)	334
HindII	GTYRAC	1 cut(s)	334
HinfI	GANTC	2 cut(s)	85, 140
HphI	GGTGA	2 cut(s)	22, 135
Hpy166II	GTNNAC	1 cut(s)	334
Hpy188III	TCNNGA	1 cut(s)	313
Hpy8I	GTNNAC	1 cut(s)	334
HpyAV	CCTTC	2 cut(s)	35, 83
HpyCH4IV	ACGT	1 cut(s)	347
HpyCH4V	TGCA	2 cut(s)	124, 197
HpyF10VI	GCNNNNNNNGC	1 cut(s)	203
HpyF3I	CTNAG	2 cut(s)	83, 279
HpySE526I	ACGT	1 cut(s)	347
Hsp92I	GRCGYC	1 cut(s)	347
Hsp92II	CATG	4 cut(s)	46, 107, 299, 316
Kzo9I	GATC	1 cut(s)	285
LpnPI	CCDG	1 cut(s)	322
Lsp1109I	GCAGC	1 cut(s)	181
MaeII	ACGT	1 cut(s)	347
MalI	GATC	1 cut(s)	287
MboI	GATC	1 cut(s)	285
MboII	GAAGA	2 cut(s)	166, 239
MluCI	AATT	1 cut(s)	134
MlyI	GAGTC	1 cut(s)	94
MmeI	TCCRAC	1 cut(s)	97
MnlI	CCTC	2 cut(s)	160, 225
MslI	CAYNNNNRTG	1 cut(s)	47
Mva1269I	GAATGC	1 cut(s)	124
MwoI	GCNNNNNNNGC	1 cut(s)	203
NcoI	CCATGG	1 cut(s)	103
NdeII	GATC	1 cut(s)	285
NlaIII	CATG	4 cut(s)	46, 107, 299, 316
NlaIV	GGNNCC	1 cut(s)	109
PagI	TCATGA	1 cut(s)	312
PctI	GAATGC	1 cut(s)	124
PfeI	GAWTC	1 cut(s)	140
PkrI	GCNGC	3 cut(s)	196, 307, 342
PleI	GAGTC	1 cut(s)	93
PpsI	GAGTC	1 cut(s)	93
PpuMI	RGGWCCY	1 cut(s)	108
Psp5II	RGGWCCY	1 cut(s)	108
PspN4I	GGNNCC	1 cut(s)	109
PspPI	GGNCC	1 cut(s)	108
PspPPI	RGGWCCY	1 cut(s)	108
RseI	CAYNNNNRTG	1 cut(s)	47
SatI	GCNGC	3 cut(s)	195, 306, 341
Sau3AI	GATC	1 cut(s)	285
Sau96I	GGNCC	1 cut(s)	108
SchI	GAGTC	1 cut(s)	94
SetI	ASST	7 cut(s)	75, 113, 153, 196, 208, 320, 350
SinI	GGWCC	1 cut(s)	108
SmiMI	CAYNNNNRTG	1 cut(s)	47
Sse9I	AATT	1 cut(s)	134
SsiI	CCGC	2 cut(s)	305, 340
StyI	CCWWGG	2 cut(s)	103, 111
TaiI	ACGT	1 cut(s)	350
TaqI	TCGA	1 cut(s)	88
TasI	AATT	1 cut(s)	134
TauI	GCSGC	2 cut(s)	308, 343
TfiI	GAWTC	1 cut(s)	140
TscAI	CASTG	2 cut(s)	204, 261
TseI	GCWGC	1 cut(s)	194
TspDTI	ATGAA	5 cut(s)	17, 17, 282, 301, 315
TspRI	CASTG	2 cut(s)	204, 261
VpaK11BI	GGWCC	1 cut(s)	108
ZraI	GACGTC	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.