Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0016304

Physical Location & Seq

Genomic Coordinates Forward (+)

23215233 .. 23216331

Gene Structure 1099 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g30062.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGATCAAGTACAGAGATGAACTCGAACGCAGAGTGTCTCTCATCCCTTCAGCGGCTGCTCTCAGTGCGGAGGATCGTTCTGCTCTTGTGAAAGCTCTAGAGAGCTTGGTTGGACGGCATTCTAAGAAATTGGAATCACCGGAGCTGAAGAAGCGCATTGCTGCTTTGACTAAAATACAGGGCCAACTCATGGACCTGGAAACAAAATTTTTTGAGAGAGCTGCACTGAAGGCGAGGCAGAAGCGTTTCCAAGAAAAGGGATACAACTTTAGGCTTTATACACTGACAAATAATGAAGTGCTTGCTAAGGAGATCACAGACCAAGATGAAGAGGCTCTCATGAATCTCAAAGATATCAAGTGCTCTCGGATAGGGAACTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

128

Amino Acids

14.57

Weight (kDa)

9.52

Isoelectric Point (pI)

32.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016304)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g11882 FvH4_6g30062
rosa_chinensis	RchiOBHm_Chr2g0117601 RchiOBHm_Chr2g0126381 RchiOBHm_Chr2g0131431
rosa_multiflora	Rmu_sc0006695.1_g000083 Rmu_sc0038051.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056080 Rroxscaffold_3G00246990
rosa_samantha	Rh2BG328300 Rh5BG101500 Rh6AG125000 Rh6CG200400
rosa_wichuraiana	Rw0G009450 Rw2G022640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	190
AciI	CCGC	2 cut(s)	53, 68
AclWI	GGATC	1 cut(s)	81
AcsI	RAATTY	1 cut(s)	206
AcuI	CTGAAG	3 cut(s)	33, 167, 248
AfaI	GTAC	1 cut(s)	11
AfiI	CCNNNNNNNGG	3 cut(s)	52, 190, 256
AjnI	CCWGG	1 cut(s)	195
AluBI	AGCT	4 cut(s)	95, 105, 145, 221
AluI	AGCT	4 cut(s)	95, 105, 145, 221
Alw21I	GWGCWC	1 cut(s)	365
Alw26I	GTCTC	1 cut(s)	42
AlwI	GGATC	1 cut(s)	81
AlwNI	CAGNNNCTG	1 cut(s)	56
AoxI	GGCC	1 cut(s)	181
ApeKI	GCWGC	3 cut(s)	56, 161, 221
ApoI	RAATTY	1 cut(s)	206
Asp700I	GAANNNNTTC	1 cut(s)	245
AspLEI	GCGC	1 cut(s)	156
AspS9I	GGNCC	2 cut(s)	181, 193
AsuHPI	GGTGA	1 cut(s)	129
AvaII	GGWCC	1 cut(s)	193
Bbv12I	GWGCWC	1 cut(s)	365
BbvI	GCAGC	3 cut(s)	43, 148, 208
BceAI	ACGGC	1 cut(s)	131
BciT130I	CCWGG	1 cut(s)	197
BciVI	GTATCC	1 cut(s)	254
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	42
BfaI	CTAG	1 cut(s)	98
BfuI	GTATCC	1 cut(s)	254
BisI	GCNGC	4 cut(s)	54, 57, 162, 222
BlsI	GCNGC	4 cut(s)	55, 58, 163, 223
Bme1390I	CCNGG	1 cut(s)	197
Bme18I	GGWCC	1 cut(s)	193
BmgT120I	GGNCC	2 cut(s)	181, 193
BmrFI	CCNGG	1 cut(s)	197
BplI	GAGNNNNNCTC	3 cut(s)	38, 24, 56
Bpu10I	CCTNAGC	1 cut(s)	306
BsaWI	WCCGGW	1 cut(s)	139
Bsc4I	CCNNNNNNNGG	3 cut(s)	52, 190, 256
Bse3DI	GCAATG	1 cut(s)	156
BseBI	CCWGG	1 cut(s)	197
BseGI	GGATG	1 cut(s)	42
BseLI	CCNNNNNNNGG	3 cut(s)	52, 190, 256
BseMI	GCAATG	1 cut(s)	156
BseMII	CTCAG	1 cut(s)	76
BseXI	GCAGC	3 cut(s)	43, 148, 208
BsgI	GTGCAG	1 cut(s)	207
BshFI	GGCC	1 cut(s)	183
BsiHKAI	GWGCWC	1 cut(s)	365
BsiSI	CCGG	1 cut(s)	140
BslI	CCNNNNNNNGG	3 cut(s)	52, 190, 256
BsmAI	GTCTC	1 cut(s)	42
BsmI	GAATGC	1 cut(s)	118
BsnI	GGCC	1 cut(s)	183
Bsp1286I	GDGCHC	1 cut(s)	365
Bsp143I	GATC	3 cut(s)	3, 73, 312
BspACI	CCGC	2 cut(s)	53, 68
BspANI	GGCC	1 cut(s)	183
BspCNI	CTCAG	1 cut(s)	75
BspHI	TCATGA	1 cut(s)	339
BspPI	GGATC	1 cut(s)	81
BsrDI	GCAATG	1 cut(s)	156
BssMI	GATC	3 cut(s)	3, 73, 312
Bst2UI	CCWGG	1 cut(s)	197
Bst6I	CTCTTC	1 cut(s)	324
BstC8I	GCNNGC	1 cut(s)	303
BstDEI	CTNAG	3 cut(s)	62, 123, 306
BstF5I	GGATG	1 cut(s)	42
BstHHI	GCGC	1 cut(s)	156
BstKTI	GATC	3 cut(s)	6, 76, 315
BstMAI	GTCTC	1 cut(s)	42
BstMBI	GATC	3 cut(s)	3, 73, 312
BstMWI	GCNNNNNNNGC	3 cut(s)	65, 151, 230
BstNI	CCWGG	1 cut(s)	197
BstSCI	CCNGG	1 cut(s)	195
BstV1I	GCAGC	3 cut(s)	43, 148, 208
BsuI	GTATCC	1 cut(s)	254
BsuRI	GGCC	1 cut(s)	183
BtsCI	GGATG	1 cut(s)	42
BtsIMutI	CAGTG	3 cut(s)	70, 224, 281
Cac8I	GCNNGC	1 cut(s)	303
CaiI	CAGNNNCTG	1 cut(s)	56
CciI	TCATGA	1 cut(s)	339
CfoI	GCGC	1 cut(s)	156
Cfr13I	GGNCC	2 cut(s)	181, 193
Csp6I	GTAC	1 cut(s)	10
CviAII	CATG	2 cut(s)	190, 340
CviJI	RGCY	8 cut(s)	56, 95, 105, 145, 183, 221, 274, 335
CviKI_1	RGCY	8 cut(s)	56, 95, 105, 145, 183, 221, 274, 335
CviQI	GTAC	1 cut(s)	10
DdeI	CTNAG	3 cut(s)	62, 123, 306
DpnI	GATC	3 cut(s)	5, 75, 314
DpnII	GATC	3 cut(s)	3, 73, 312
Eam1104I	CTCTTC	1 cut(s)	324
EarI	CTCTTC	1 cut(s)	324
Eco32I	GATATC	1 cut(s)	355
Eco47I	GGWCC	1 cut(s)	193
Eco57I	CTGAAG	3 cut(s)	33, 167, 248
EcoRII	CCWGG	1 cut(s)	195
EcoRV	GATATC	1 cut(s)	355
FaeI	CATG	2 cut(s)	193, 343
FaiI	YATR	3 cut(s)	191, 279, 341
FatI	CATG	2 cut(s)	189, 339
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	4 cut(s)	54, 57, 162, 222
FokI	GGATG	1 cut(s)	29
Fsp4HI	GCNGC	4 cut(s)	54, 57, 162, 222
FspBI	CTAG	1 cut(s)	98
GlaI	GCGC	1 cut(s)	155
GluI	GCNGC	4 cut(s)	54, 57, 162, 222
HaeIII	GGCC	1 cut(s)	183
HapII	CCGG	1 cut(s)	140
HhaI	GCGC	1 cut(s)	156
Hin1II	CATG	2 cut(s)	193, 343
Hin6I	GCGC	1 cut(s)	154
HinP1I	GCGC	1 cut(s)	154
HinfI	GANTC	2 cut(s)	134, 343
HpaII	CCGG	1 cut(s)	140
HphI	GGTGA	1 cut(s)	129
Hpy188I	TCNGA	1 cut(s)	369
Hpy188III	TCNNGA	2 cut(s)	98, 340
HpyAV	CCTTC	2 cut(s)	57, 223
HpyCH4V	TGCA	1 cut(s)	224
HpyF10VI	GCNNNNNNNGC	3 cut(s)	65, 151, 230
HpyF3I	CTNAG	3 cut(s)	62, 123, 306
Hsp92II	CATG	2 cut(s)	193, 343
HspAI	GCGC	1 cut(s)	154
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	3 cut(s)	3, 73, 312
LmnI	GCTCC	1 cut(s)	142
LpnPI	CCDG	4 cut(s)	153, 164, 182, 209
Lsp1109I	GCAGC	3 cut(s)	43, 148, 208
MaeI	CTAG	1 cut(s)	98
MalI	GATC	3 cut(s)	5, 75, 314
MboI	GATC	3 cut(s)	3, 73, 312
MboII	GAAGA	2 cut(s)	160, 341
MhlI	GDGCHC	1 cut(s)	365
MluCI	AATT	2 cut(s)	128, 206
MmeI	TCCRAC	1 cut(s)	91
MnlI	CCTC	3 cut(s)	64, 228, 325
MroXI	GAANNNNTTC	1 cut(s)	245
MseI	TTAA	1 cut(s)	382
MspA1I	CMGCKG	1 cut(s)	53
MspI	CCGG	1 cut(s)	140
MspR9I	CCNGG	1 cut(s)	197
Mva1269I	GAATGC	1 cut(s)	118
MvaI	CCWGG	1 cut(s)	197
MwoI	GCNNNNNNNGC	3 cut(s)	65, 151, 230
NdeII	GATC	3 cut(s)	3, 73, 312
NlaIII	CATG	2 cut(s)	193, 343
PagI	TCATGA	1 cut(s)	339
PctI	GAATGC	1 cut(s)	118
PdmI	GAANNNNTTC	1 cut(s)	245
PfeI	GAWTC	2 cut(s)	134, 343
PflMI	CCANNNNNTGG	1 cut(s)	190
PkrI	GCNGC	4 cut(s)	55, 58, 163, 223
Psp6I	CCWGG	1 cut(s)	195
PspGI	CCWGG	1 cut(s)	195
PspPI	GGNCC	2 cut(s)	181, 193
PstNI	CAGNNNCTG	1 cut(s)	56
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
SaqAI	TTAA	1 cut(s)	382
SatI	GCNGC	4 cut(s)	54, 57, 162, 222
Sau3AI	GATC	3 cut(s)	3, 73, 312
Sau96I	GGNCC	2 cut(s)	181, 193
ScrFI	CCNGG	1 cut(s)	197
SduI	GDGCHC	1 cut(s)	365
SetI	ASST	5 cut(s)	97, 107, 147, 198, 223
SinI	GGWCC	1 cut(s)	193
Sse9I	AATT	2 cut(s)	128, 206
SsiI	CCGC	2 cut(s)	53, 68
SspMI	CTAG	1 cut(s)	98
StyD4I	CCNGG	1 cut(s)	195
TaqI	TCGA	1 cut(s)	24
TasI	AATT	2 cut(s)	128, 206
TatI	WGTACW	1 cut(s)	9
TauI	GCSGC	1 cut(s)	56
TfiI	GAWTC	2 cut(s)	134, 343
Tru1I	TTAA	1 cut(s)	382
Tru9I	TTAA	1 cut(s)	382
TscAI	CASTG	3 cut(s)	70, 231, 288
TseI	GCWGC	3 cut(s)	56, 161, 221
TspDTI	ATGAA	4 cut(s)	33, 309, 342, 356
TspRI	CASTG	3 cut(s)	70, 231, 288
Van91I	CCANNNNNTGG	1 cut(s)	190
VpaK11BI	GGWCC	1 cut(s)	193
XapI	RAATTY	1 cut(s)	206
XbaI	TCTAGA	1 cut(s)	97
XmnI	GAANNNNTTC	1 cut(s)	245
XspI	CTAG	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.