Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0016304

Physical Location & Seq

Genomic Coordinates Forward (+)

40321321 .. 40323745

Gene Structure 2425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00246990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGTGGCTGCAGTGAGTCCACCTTGGTGGTCGGAGATCGATGACGGAGGAAAGAGCCTTCCAGATGCAGGTTCTCTCTCCTCCATCTCTCTCTATGGAAAGGAGACCTTGGTTGGATTGCATTCTAACAAATTGGAATCACCCGAGCTGAAGACCCGCATTGAGGCTTTGACAGAAATACAGGTTGGTCTTCTTTTAAGATTTATCTTTCTTAGCTTTAAGGCCAACTCAAGGACCTGGAAACAAAATCTTTTTGAGGAGAGAGCAGCACTGAAAGCTAAACAGAAGCGTTTCCAAGAAGAGAGGCATAACTTTAGGCTTTATACACTGAAAAATAATGAAGTGCTTGCTAAGGAGATCACAGAGCATGATGAAGAGGCTTTCATGAGCTTTGATGTGTTTGTTGACAGGCGGCAGACGTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

141

Amino Acids

16.25

Weight (kDa)

6.32

Isoelectric Point (pI)

53.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016304)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g11882 FvH4_6g30062
rosa_chinensis	RchiOBHm_Chr2g0117601 RchiOBHm_Chr2g0126381 RchiOBHm_Chr2g0131431
rosa_multiflora	Rmu_sc0006695.1_g000083 Rmu_sc0038051.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056080 Rroxscaffold_3G00246990
rosa_samantha	Rh2BG328300 Rh5BG101500 Rh6AG125000 Rh6CG200400
rosa_wichuraiana	Rw0G009450 Rw2G022640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	422
Acc36I	ACCTGC	1 cut(s)	59
AciI	CCGC	2 cut(s)	157, 412
AcuI	CTGAAG	1 cut(s)	170
AcyI	GRCGYC	1 cut(s)	419
AfiI	CCNNNNNNNGG	3 cut(s)	68, 163, 231
AjnI	CCWGG	1 cut(s)	236
AjuI	GAANNNNNNNTTGG	2 cut(s)	168, 200
AleI	CACNNNNGTG	1 cut(s)	25
AluBI	AGCT	4 cut(s)	148, 216, 278, 390
AluI	AGCT	4 cut(s)	148, 216, 278, 390
Alw26I	GTCTC	1 cut(s)	98
Ama87I	CYCGRG	1 cut(s)	143
AoxI	GGCC	1 cut(s)	222
ApeKI	GCWGC	2 cut(s)	8, 266
Asp700I	GAANNNNTTC	1 cut(s)	290
AspS9I	GGNCC	1 cut(s)	234
AsuHPI	GGTGA	1 cut(s)	132
AvaI	CYCGRG	1 cut(s)	143
AvaII	GGWCC	1 cut(s)	234
BbsI	GAAGAC	2 cut(s)	158, 182
BbvI	GCAGC	1 cut(s)	278
BccI	CCATC	1 cut(s)	92
BciT130I	CCWGG	1 cut(s)	238
BcoDI	GTCTC	1 cut(s)	98
BfmI	CTRYAG	1 cut(s)	9
BfuAI	ACCTGC	1 cut(s)	59
BisI	GCNGC	3 cut(s)	9, 267, 413
BlsI	GCNGC	3 cut(s)	10, 268, 414
Bme1390I	CCNGG	1 cut(s)	238
Bme18I	GGWCC	1 cut(s)	234
BmeT110I	CYCGRG	1 cut(s)	143
BmgT120I	GGNCC	1 cut(s)	234
BmrFI	CCNGG	1 cut(s)	238
BmsI	GCATC	1 cut(s)	55
BpiI	GAAGAC	2 cut(s)	158, 182
Bpu10I	CCTNAGC	1 cut(s)	351
BpuEI	CTTGAG	1 cut(s)	214
Bsa29I	ATCGAT	1 cut(s)	39
BsaHI	GRCGYC	1 cut(s)	419
BsaI	GGTCTC	1 cut(s)	98
BsaJI	CCNNGG	2 cut(s)	23, 108
Bsc4I	CCNNNNNNNGG	3 cut(s)	68, 163, 231
BseBI	CCWGG	1 cut(s)	238
BseCI	ATCGAT	1 cut(s)	39
BseDI	CCNNGG	2 cut(s)	23, 108
BseLI	CCNNNNNNNGG	3 cut(s)	68, 163, 231
BseRI	GAGGAG	2 cut(s)	70, 272
BseXI	GCAGC	1 cut(s)	278
BshFI	GGCC	1 cut(s)	224
BshVI	ATCGAT	1 cut(s)	39
BsiHKCI	CYCGRG	1 cut(s)	143
BslI	CCNNNNNNNGG	3 cut(s)	68, 163, 231
BsmAI	GTCTC	1 cut(s)	98
BsmI	GAATGC	1 cut(s)	121
BsnI	GGCC	1 cut(s)	224
Bso31I	GGTCTC	1 cut(s)	98
BsoBI	CYCGRG	1 cut(s)	143
Bsp143I	GATC	2 cut(s)	36, 357
BspACI	CCGC	2 cut(s)	157, 412
BspANI	GGCC	1 cut(s)	224
BspDI	ATCGAT	1 cut(s)	39
BspHI	TCATGA	1 cut(s)	384
BspMAI	CTGCAG	1 cut(s)	13
BspMI	ACCTGC	1 cut(s)	59
BspTNI	GGTCTC	1 cut(s)	98
BssECI	CCNNGG	2 cut(s)	23, 108
BssMI	GATC	2 cut(s)	36, 357
BssNI	GRCGYC	1 cut(s)	419
BssT1I	CCWWGG	2 cut(s)	23, 108
Bst2UI	CCWGG	1 cut(s)	238
Bst6I	CTCTTC	2 cut(s)	294, 369
BstACI	GRCGYC	1 cut(s)	419
BstC8I	GCNNGC	1 cut(s)	348
BstDEI	CTNAG	2 cut(s)	212, 351
BstKTI	GATC	2 cut(s)	39, 360
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	2 cut(s)	36, 357
BstMWI	GCNNNNNNNGC	1 cut(s)	275
BstNI	CCWGG	1 cut(s)	238
BstSCI	CCNGG	1 cut(s)	236
BstSFI	CTRYAG	1 cut(s)	9
BstV1I	GCAGC	1 cut(s)	278
BstV2I	GAAGAC	2 cut(s)	158, 182
BstXI	CCANNNNNNTGG	1 cut(s)	27
Bsu15I	ATCGAT	1 cut(s)	39
BsuRI	GGCC	1 cut(s)	224
BsuTUI	ATCGAT	1 cut(s)	39
BtsI	GCAGTG	1 cut(s)	18
BtsIMutI	CAGTG	3 cut(s)	18, 269, 326
BveI	ACCTGC	1 cut(s)	59
Cac8I	GCNNGC	1 cut(s)	348
CciI	TCATGA	1 cut(s)	384
Cfr13I	GGNCC	1 cut(s)	234
ClaI	ATCGAT	1 cut(s)	39
CviAII	CATG	2 cut(s)	368, 385
DdeI	CTNAG	2 cut(s)	212, 351
DpnI	GATC	2 cut(s)	38, 359
DpnII	GATC	2 cut(s)	36, 357
Eam1104I	CTCTTC	2 cut(s)	294, 369
EarI	CTCTTC	2 cut(s)	294, 369
Eco130I	CCWWGG	2 cut(s)	23, 108
Eco31I	GGTCTC	1 cut(s)	98
Eco47I	GGWCC	1 cut(s)	234
Eco57I	CTGAAG	1 cut(s)	170
Eco88I	CYCGRG	1 cut(s)	143
EcoO109I	RGGNCCY	1 cut(s)	234
EcoRII	CCWGG	1 cut(s)	236
EcoT14I	CCWWGG	2 cut(s)	23, 108
ErhI	CCWWGG	2 cut(s)	23, 108
FaeI	CATG	2 cut(s)	371, 388
FaiI	YATR	5 cut(s)	96, 309, 324, 369, 386
FalI	AAGNNNNNCTT	2 cut(s)	92, 124
FatI	CATG	2 cut(s)	367, 384
FauI	CCCGC	1 cut(s)	164
Fnu4HI	GCNGC	3 cut(s)	9, 267, 413
Fsp4HI	GCNGC	3 cut(s)	9, 267, 413
GluI	GCNGC	3 cut(s)	9, 267, 413
HaeIII	GGCC	1 cut(s)	224
Hin1I	GRCGYC	1 cut(s)	419
Hin1II	CATG	2 cut(s)	371, 388
HincII	GTYRAC	1 cut(s)	406
HindII	GTYRAC	1 cut(s)	406
HinfI	GANTC	2 cut(s)	16, 137
HphI	GGTGA	1 cut(s)	132
Hpy166II	GTNNAC	2 cut(s)	20, 406
Hpy188I	TCNGA	1 cut(s)	34
Hpy188III	TCNNGA	2 cut(s)	62, 385
Hpy8I	GTNNAC	2 cut(s)	20, 406
HpyAV	CCTTC	1 cut(s)	68
HpyCH4IV	ACGT	1 cut(s)	419
HpyCH4V	TGCA	3 cut(s)	11, 68, 121
HpyF10VI	GCNNNNNNNGC	1 cut(s)	275
HpyF3I	CTNAG	2 cut(s)	212, 351
HpySE526I	ACGT	1 cut(s)	419
Hsp92I	GRCGYC	1 cut(s)	419
Hsp92II	CATG	2 cut(s)	371, 388
Kzo9I	GATC	2 cut(s)	36, 357
LpnPI	CCDG	6 cut(s)	54, 75, 167, 223, 250, 394
Lsp1109I	GCAGC	1 cut(s)	278
LweI	GCATC	1 cut(s)	55
MaeII	ACGT	1 cut(s)	419
MalI	GATC	2 cut(s)	38, 359
MboI	GATC	2 cut(s)	36, 357
MboII	GAAGA	4 cut(s)	163, 182, 311, 386
MluCI	AATT	1 cut(s)	131
MlyI	GAGTC	1 cut(s)	25
MmeI	TCCRAC	2 cut(s)	12, 94
MnlI	CCTC	6 cut(s)	41, 91, 157, 250, 297, 370
MroXI	GAANNNNTTC	1 cut(s)	290
MseI	TTAA	2 cut(s)	197, 219
MslI	CAYNNNNRTG	1 cut(s)	25
MspR9I	CCNGG	1 cut(s)	238
Mva1269I	GAATGC	1 cut(s)	121
MvaI	CCWGG	1 cut(s)	238
MwoI	GCNNNNNNNGC	1 cut(s)	275
NdeII	GATC	2 cut(s)	36, 357
NlaIII	CATG	2 cut(s)	371, 388
OliI	CACNNNNGTG	1 cut(s)	25
PagI	TCATGA	1 cut(s)	384
PctI	GAATGC	1 cut(s)	121
PdmI	GAANNNNTTC	1 cut(s)	290
PfeI	GAWTC	1 cut(s)	137
PkrI	GCNGC	3 cut(s)	10, 268, 414
PleI	GAGTC	1 cut(s)	24
PpsI	GAGTC	1 cut(s)	24
PpuMI	RGGWCCY	1 cut(s)	234
Psp5II	RGGWCCY	1 cut(s)	234
Psp6I	CCWGG	1 cut(s)	236
PspGI	CCWGG	1 cut(s)	236
PspPI	GGNCC	1 cut(s)	234
PspPPI	RGGWCCY	1 cut(s)	234
PstI	CTGCAG	1 cut(s)	13
RseI	CAYNNNNRTG	1 cut(s)	25
SaqAI	TTAA	2 cut(s)	197, 219
SatI	GCNGC	3 cut(s)	9, 267, 413
Sau3AI	GATC	2 cut(s)	36, 357
Sau96I	GGNCC	1 cut(s)	234
SchI	GAGTC	1 cut(s)	25
ScrFI	CCNGG	1 cut(s)	238
SfaNI	GCATC	1 cut(s)	55
SfcI	CTRYAG	1 cut(s)	9
SinI	GGWCC	1 cut(s)	234
SmiMI	CAYNNNNRTG	1 cut(s)	25
SmlI	CTYRAG	1 cut(s)	229
SmoI	CTYRAG	1 cut(s)	229
Sse9I	AATT	1 cut(s)	131
SsiI	CCGC	2 cut(s)	157, 412
StyD4I	CCNGG	1 cut(s)	236
StyI	CCWWGG	2 cut(s)	23, 108
TaiI	ACGT	1 cut(s)	422
TaqI	TCGA	1 cut(s)	39
TasI	AATT	1 cut(s)	131
TauI	GCSGC	1 cut(s)	415
TfiI	GAWTC	1 cut(s)	137
Tru1I	TTAA	2 cut(s)	197, 219
Tru9I	TTAA	2 cut(s)	197, 219
TscAI	CASTG	3 cut(s)	18, 276, 333
TseI	GCWGC	2 cut(s)	8, 266
TspDTI	ATGAA	3 cut(s)	354, 373, 387
TspGWI	ACGGA	1 cut(s)	60
TspRI	CASTG	3 cut(s)	18, 276, 333
VpaK11BI	GGWCC	1 cut(s)	234
XmnI	GAANNNNTTC	1 cut(s)	290
ZraI	GACGTC	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.